python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf ME49.Bz.A-SRX9295974-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-ME49.Bz.A-SRX9295974.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf ME49.Bz.B-SRX9295975-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-ME49.Bz.B-SRX9295975.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf ME49.Tz.A-SRX9295976-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-ME49.Tz.A-SRX9295976.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf ME49.Tz.B-SRX9295977-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-ME49.Tz.B-SRX9295977.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH.Tz.A-SRX9295978-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-RH.Tz.A-SRX9295978.unique.5p -normalize -singlemodelgenes
python /oak/stanford/groups/akundaje/marinovg/code/transcriptome/gene_coverage_wig_gtf.py /oak/stanford/groups/akundaje/marinovg/genomes/Apicomplexa/Toxoplasma_gondii/Toxoplasma_gondii.ToxoDB-7.1.20.gtf RH.Tz.B-SRX9295979-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig 1000 coverage-RH.Tz.B-SRX9295979.unique.5p -normalize -singlemodelgenes