Index of /kundaje/marinovg/oak/Promoters/2021-01-29-CAGE-RAMPAGE-datasets/03-Sus_scrofa-RAMPAGE-PRJNA672728

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]Adipose-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 5.5M 
[ ]Adipose-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:30 2.0M 
[ ]Adipose-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.7M 
[ ]Adipose-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 286K 
[ ]Adipose-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:59 5.5M 
[DIR]Adipose-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Bladder-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 7.0M 
[ ]Bladder-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:30 2.3M 
[ ]Bladder-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.0M 
[ ]Bladder-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 350K 
[ ]Bladder-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:10 7.0M 
[DIR]Bladder-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]BoneMarrow-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 9.7M 
[ ]BoneMarrow-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:30 2.6M 
[ ]BoneMarrow-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.2M 
[ ]BoneMarrow-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 379K 
[ ]BoneMarrow-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:21 9.7M 
[DIR]BoneMarrow-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]BrainCortex-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 3.3M 
[ ]BrainCortex-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:30 2.4M 
[ ]BrainCortex-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.0M 
[ ]BrainCortex-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 338K 
[ ]BrainCortex-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:42 3.3M 
[DIR]BrainCortex-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Cerebellum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 7.9M 
[ ]Cerebellum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 3.0M 
[ ]Cerebellum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.5M 
[ ]Cerebellum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 458K 
[ ]Cerebellum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:46 7.9M 
[DIR]Cerebellum-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Colon-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 1.4M 
[ ]Colon-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 1.3M 
[ ]Colon-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.1M 
[ ]Colon-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 186K 
[ ]Colon-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:30 1.4M 
[DIR]Colon-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Duodenum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 11M 
[ ]Duodenum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 1.6M 
[ ]Duodenum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.3M 
[ ]Duodenum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 210K 
[ ]Duodenum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 17:24 11M 
[DIR]Duodenum-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Esophagus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 6.8M 
[ ]Esophagus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 2.1M 
[ ]Esophagus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.7M 
[ ]Esophagus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 304K 
[ ]Esophagus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:14 6.8M 
[DIR]Esophagus-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Heart-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 8.5M 
[ ]Heart-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 2.0M 
[ ]Heart-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.6M 
[ ]Heart-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 277K 
[ ]Heart-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 17:05 8.6M 
[DIR]Heart-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Hypothalamus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 10M 
[ ]Hypothalamus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 2.5M 
[ ]Hypothalamus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.1M 
[ ]Hypothalamus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 345K 
[ ]Hypothalamus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:30 10M 
[DIR]Hypothalamus-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Ileum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 38M 
[ ]Ileum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 2.5M 
[ ]Ileum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.1M 
[ ]Ileum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 339K 
[ ]Ileum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 18:00 38M 
[DIR]Ileum-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Jejunum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 22M 
[ ]Jejunum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:31 1.5M 
[ ]Jejunum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.3M 
[ ]Jejunum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 197K 
[ ]Jejunum-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 18:55 22M 
[DIR]Jejunum-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Kidney-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 10M 
[ ]Kidney-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 2.4M 
[ ]Kidney-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.0M 
[ ]Kidney-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 337K 
[ ]Kidney-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:47 10M 
[DIR]Kidney-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Liver-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 15M 
[ ]Liver-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 1.5M 
[ ]Liver-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.2M 
[ ]Liver-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 187K 
[ ]Liver-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 18:36 15M 
[DIR]Liver-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Liver-pooled.end1.fastq.gz2025-07-22 10:07 4.9G 
[ ]Liver-pooled.end2.fastq.gz2025-07-22 10:07 5.9G 
[ ]Lung-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 30M 
[ ]Lung-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 2.5M 
[ ]Lung-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.1M 
[ ]Lung-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 370K 
[ ]Lung-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 17:21 30M 
[DIR]Lung-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Lymphoid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 9.3M 
[ ]Lymphoid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 2.2M 
[ ]Lymphoid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.9M 
[ ]Lymphoid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 293K 
[ ]Lymphoid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:17 9.3M 
[DIR]Lymphoid-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Muscle-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 5.2M 
[ ]Muscle-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 1.3M 
[ ]Muscle-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.1M 
[ ]Muscle-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 171K 
[ ]Muscle-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:19 5.2M 
[DIR]Muscle-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]SAMstats.files2021-02-05 09:57 860  
[TXT]SAMstats.sh2021-02-05 09:57 6.8K 
[ ]SAMstats.table2021-02-07 09:05 1.7K 
[ ]SAMstats.tar.gz2021-02-07 09:05 1.7K 
[TXT]STAR.sh2021-02-05 09:57 22K 
[ ]Skin-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 4.5M 
[ ]Skin-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 2.1M 
[ ]Skin-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.8M 
[ ]Skin-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 311K 
[ ]Skin-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:50 4.5M 
[DIR]Skin-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Spleen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 8.3M 
[ ]Spleen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 2.0M 
[ ]Spleen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.7M 
[ ]Spleen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 272K 
[ ]Spleen-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:20 8.3M 
[DIR]Spleen-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Thymus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 1.6M 
[ ]Thymus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:32 1.5M 
[ ]Thymus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 1.3M 
[ ]Thymus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 202K 
[ ]Thymus-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:31 1.6M 
[DIR]Thymus-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Thyroid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 6.9M 
[ ]Thyroid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:33 2.6M 
[ ]Thyroid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.3M 
[ ]Thyroid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 345K 
[ ]Thyroid-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 16:01 6.9M 
[DIR]Thyroid-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]Trachea-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.bed2025-08-17 19:43 3.2M 
[ ]Trachea-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.bed2025-08-26 15:33 2.4M 
[ ]Trachea-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.train.bed2025-08-17 19:47 2.0M 
[ ]Trachea-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.2500bp_filter.min1RPM.val.bed2025-08-17 19:47 337K 
[ ]Trachea-pooled-STAR-2.5.3a.RAMPAGE-clusters-V2.bed2025-07-22 15:48 3.2M 
[DIR]Trachea-pooled-STAR-2.5.3a/2025-08-14 16:44 -  
[ ]command_generate.config2021-02-05 09:57 1.6K 
[TXT]countlines.sh2021-02-05 09:57 1.5K 
[ ]coverage.files2021-02-05 09:57 1.1K 
[TXT]coverage.sh2021-02-05 09:57 7.7K 
[ ]coverage.table2021-02-07 09:05 47K 
[ ]coverage.tar.gz2021-02-07 09:05 25K 
[ ]fastq-lines.tar.gz2021-02-07 09:05 1.3K 
[TXT]makewig.sh2021-02-05 09:57 207K 
[ ]sam_reads_in_genes.files2021-02-05 09:57 1.1K 
[TXT]sam_reads_in_genes.sh2021-02-05 09:57 9.8K 
[ ]sam_reads_in_genes.table2021-02-07 09:05 1.3K 
[ ]sam_reads_in_genes.tar.gz2021-02-07 09:05 1.4K 
[TXT]samtools-index.sh2021-02-05 09:57 1.8K 
[TXT]wget.sh2021-01-30 07:26 20K 
[TXT]wigToBigWig.sh2021-02-05 09:57 180K 
[ ]z2025-07-22 14:59 10K 
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