cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_caudatum_43c3d/lastdb-Paramecium_caudatum_43c3d  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_16I-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_16I-dipSPAdes-3.5.0--consensus_contigs-vs-caudatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_caudatum_43c3d/lastdb-Paramecium_caudatum_43c3d  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_C026-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_C026-dipSPAdes-3.5.0--consensus_contigs-vs-caudatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_Canal-1I-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_Canal-1I-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_M08-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_M08-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_M13-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_M13-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_M15-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_M15-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_Peniche3I-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_Peniche3I-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum
cd /N/dc2/projects/marinovg/Paramecium/variation/2016-04-04-LAST; /N/dc2/projects/marinovg/programs/last-604/src/lastal -m100 -E0.05 /N/dc2/projects/marinovg/2015-12-15-P-mm/lastdb-Paramecium_multimicronucleatum_MO3c4/lastdb-Paramecium_multimicronucleatum_MO3c4  /N/dc2/projects/marinovg/Paramecium/variation/2015-09-07-assemblies/Sample_TRB101-4-dipSPAdes-3.5.0-trimmed/dipspades/consensus_contigs.fasta | /N/dc2/projects/marinovg/programs/last-604/src/last-split -m1 >  lastdb-Sample_TRB101-4-dipSPAdes-3.5.0--consensus_contigs-vs-multimicronucleatum