export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_C026-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_C026-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_C026-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_M08-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_M08-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_M08-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_M13-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_M13-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_M13-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_M15-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_M15-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_M15-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -O -o Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O -f Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.tRNAscan.O.SS Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_C026-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_C026-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_C026-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_M08-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_M08-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_M08-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_M13-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_M13-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_M13-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_M15-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_M15-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_M15-SPAdes-3.5.0-trimmed.mito.fa
export PATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PATH; export PERl5LIB=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin:$PERl5LIB; export MANPATH=/N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/man:$MANPATH; cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; /N/dc2/projects/marinovg/programs/tRNAscan-SE-1.3.1/bin/tRNAscan-SE -G -o Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G -f Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.tRNAscan.G.SS Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.fa