cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.50perc_cov.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies.50perc_cov -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.80perc_cov.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies.80perc_cov -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.90perc_cov.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies.90perc_cov -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.95perc_cov.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies.95perc_cov -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.99perc_cov.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies.99perc_cov -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/supermatrix; module load raxml/8.0.26; raxml -f a -s supermatrix.mito.full-assemblies.fa -n RAxML-PROTGAMMAGTR-supermatrix.mito.full-assemblies -m PROTGAMMAGTR -T 16 -p 12345 -N 100 -x 12345