cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito/P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_C026-SPAdes-3.5.0-trimmed.mito/Sample_C026-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_C026-SPAdes-3.5.0-trimmed.mito/Sample_C026-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_C026-SPAdes-3.5.0-trimmed.mito/Sample_C026-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito/Sample_Canal-1I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M08-SPAdes-3.5.0-trimmed.mito/Sample_M08-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M08-SPAdes-3.5.0-trimmed.mito/Sample_M08-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M08-SPAdes-3.5.0-trimmed.mito/Sample_M08-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M13-SPAdes-3.5.0-trimmed.mito/Sample_M13-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M13-SPAdes-3.5.0-trimmed.mito/Sample_M13-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M13-SPAdes-3.5.0-trimmed.mito/Sample_M13-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M15-SPAdes-3.5.0-trimmed.mito/Sample_M15-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M15-SPAdes-3.5.0-trimmed.mito/Sample_M15-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_M15-SPAdes-3.5.0-trimmed.mito/Sample_M15-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito; module load hmmer/3.0; hmmscan --cpu 16 -o /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.PFam-27-A --tblout /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.hmmscan.tblout /N/dc2/projects/marinovg/genomes/PFam/PFam27.0/Pfam-A.hmm /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito/Sample_Peniche3I-SPAdes-3.5.0-trimmed.mito.60aa-ORF.renamed.min100aa.ORF.fa