#seq1	Length	seq2	Length	Similarity_AB	Similarity_BA	Similarity_max
rpS3|P.biaurelia-Sample_379	127	rpS3|P.caudatum-Sample_C083	382	0.385826771654	0.128272251309	0.385826771654
rpS3|P.biaurelia-Sample_379	127	rpS3|P.multimicronucleatum-Sample_M04	165	0.283464566929	0.218181818182	0.283464566929
rpS3|P.biaurelia-Sample_379	127	rpS3|P.octaurelia-Sample_1038	125	0.779527559055	0.792	0.792
rpS3|P.biaurelia-Sample_379	127	rpS3|P.sexaurelia-Sample_130	144	0.708661417323	0.625	0.708661417323
rpS3|P.biaurelia-Sample_379	127	rpS3|P.tetraurelia-Sample_291	125	0.748031496063	0.76	0.76
rpS3|P.biaurelia-Sample_379	127	rpS3|Sample_C026	381	0.377952755906	0.125984251969	0.377952755906
rpS3|P.biaurelia-Sample_379	127	rpS3|Sample_M13	166	0.307086614173	0.234939759036	0.307086614173
rpS3|P.biaurelia-Sample_379	127	rpS3|Sample_Peniche3I	166	0.314960629921	0.240963855422	0.314960629921
rpS3|P.caudatum-Sample_C083	382	rpS3|P.multimicronucleatum-Sample_M04	165	0.185863874346	0.430303030303	0.430303030303
rpS3|P.caudatum-Sample_C083	382	rpS3|P.octaurelia-Sample_1038	125	0.128272251309	0.392	0.392
rpS3|P.caudatum-Sample_C083	382	rpS3|P.sexaurelia-Sample_130	144	0.159685863874	0.423611111111	0.423611111111
rpS3|P.caudatum-Sample_C083	382	rpS3|P.tetraurelia-Sample_291	125	0.130890052356	0.4	0.4
rpS3|P.caudatum-Sample_C083	382	rpS3|Sample_C026	381	0.573298429319	0.574803149606	0.574803149606
rpS3|P.caudatum-Sample_C083	382	rpS3|Sample_M13	166	0.193717277487	0.44578313253	0.44578313253
rpS3|P.caudatum-Sample_C083	382	rpS3|Sample_Peniche3I	166	0.196335078534	0.451807228916	0.451807228916
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|P.octaurelia-Sample_1038	125	0.218181818182	0.288	0.288
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|P.sexaurelia-Sample_130	144	0.290909090909	0.333333333333	0.333333333333
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|P.tetraurelia-Sample_291	125	0.212121212121	0.28	0.28
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|Sample_C026	381	0.436363636364	0.188976377953	0.436363636364
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|Sample_M13	166	0.721212121212	0.71686746988	0.721212121212
rpS3|P.multimicronucleatum-Sample_M04	165	rpS3|Sample_Peniche3I	166	0.733333333333	0.728915662651	0.733333333333
rpS3|P.octaurelia-Sample_1038	125	rpS3|P.sexaurelia-Sample_130	144	0.68	0.590277777778	0.68
rpS3|P.octaurelia-Sample_1038	125	rpS3|P.tetraurelia-Sample_291	125	0.832	0.832	0.832
rpS3|P.octaurelia-Sample_1038	125	rpS3|Sample_C026	381	0.392	0.128608923885	0.392
rpS3|P.octaurelia-Sample_1038	125	rpS3|Sample_M13	166	0.32	0.240963855422	0.32
rpS3|P.octaurelia-Sample_1038	125	rpS3|Sample_Peniche3I	166	0.352	0.265060240964	0.352
rpS3|P.sexaurelia-Sample_130	144	rpS3|P.tetraurelia-Sample_291	125	0.618055555556	0.712	0.712
rpS3|P.sexaurelia-Sample_130	144	rpS3|Sample_C026	381	0.416666666667	0.157480314961	0.416666666667
rpS3|P.sexaurelia-Sample_130	144	rpS3|Sample_M13	166	0.361111111111	0.313253012048	0.361111111111
rpS3|P.sexaurelia-Sample_130	144	rpS3|Sample_Peniche3I	166	0.388888888889	0.33734939759	0.388888888889
rpS3|P.tetraurelia-Sample_291	125	rpS3|Sample_C026	381	0.424	0.139107611549	0.424
rpS3|P.tetraurelia-Sample_291	125	rpS3|Sample_M13	166	0.336	0.253012048193	0.336
rpS3|P.tetraurelia-Sample_291	125	rpS3|Sample_Peniche3I	166	0.344	0.259036144578	0.344
rpS3|Sample_C026	381	rpS3|Sample_M13	166	0.202099737533	0.463855421687	0.463855421687
rpS3|Sample_C026	381	rpS3|Sample_Peniche3I	166	0.199475065617	0.457831325301	0.457831325301
rpS3|Sample_M13	166	rpS3|Sample_Peniche3I	166	0.861445783133	0.861445783133	0.861445783133