#seq1	Length	seq2	Length	Similarity_AB	Similarity_BA	Similarity_max
cox2|P.biaurelia-Sample_379	567	cox2|P.caudatum-Sample_C083	580	0.858906525573	0.839655172414	0.858906525573
cox2|P.biaurelia-Sample_379	567	cox2|P.multimicronucleatum-Sample_M04	582	0.834215167549	0.812714776632	0.834215167549
cox2|P.biaurelia-Sample_379	567	cox2|P.octaurelia-Sample_1038	592	0.94708994709	0.907094594595	0.94708994709
cox2|P.biaurelia-Sample_379	567	cox2|P.sexaurelia-Sample_130	591	0.941798941799	0.903553299492	0.941798941799
cox2|P.biaurelia-Sample_379	567	cox2|P.tetraurelia-Sample_291	594	0.931216931217	0.888888888889	0.931216931217
cox2|P.biaurelia-Sample_379	567	cox2|Sample_C026	567	0.858906525573	0.858906525573	0.858906525573
cox2|P.biaurelia-Sample_379	567	cox2|Sample_M13	579	0.846560846561	0.829015544041	0.846560846561
cox2|P.biaurelia-Sample_379	567	cox2|Sample_Peniche3I	550	0.811287477954	0.836363636364	0.836363636364
cox2|P.caudatum-Sample_C083	580	cox2|P.multimicronucleatum-Sample_M04	582	0.81724137931	0.814432989691	0.81724137931
cox2|P.caudatum-Sample_C083	580	cox2|P.octaurelia-Sample_1038	592	0.851724137931	0.834459459459	0.851724137931
cox2|P.caudatum-Sample_C083	580	cox2|P.sexaurelia-Sample_130	591	0.853448275862	0.837563451777	0.853448275862
cox2|P.caudatum-Sample_C083	580	cox2|P.tetraurelia-Sample_291	594	0.855172413793	0.835016835017	0.855172413793
cox2|P.caudatum-Sample_C083	580	cox2|Sample_C026	567	0.95	0.971781305115	0.971781305115
cox2|P.caudatum-Sample_C083	580	cox2|Sample_M13	579	0.831034482759	0.832469775475	0.832469775475
cox2|P.caudatum-Sample_C083	580	cox2|Sample_Peniche3I	550	0.786206896552	0.829090909091	0.829090909091
cox2|P.multimicronucleatum-Sample_M04	582	cox2|P.octaurelia-Sample_1038	592	0.833333333333	0.819256756757	0.833333333333
cox2|P.multimicronucleatum-Sample_M04	582	cox2|P.sexaurelia-Sample_130	591	0.841924398625	0.82910321489	0.841924398625
cox2|P.multimicronucleatum-Sample_M04	582	cox2|P.tetraurelia-Sample_291	594	0.829896907216	0.813131313131	0.829896907216
cox2|P.multimicronucleatum-Sample_M04	582	cox2|Sample_C026	567	0.795532646048	0.816578483245	0.816578483245
cox2|P.multimicronucleatum-Sample_M04	582	cox2|Sample_M13	579	0.946735395189	0.951640759931	0.951640759931
cox2|P.multimicronucleatum-Sample_M04	582	cox2|Sample_Peniche3I	550	0.895189003436	0.947272727273	0.947272727273
cox2|P.octaurelia-Sample_1038	592	cox2|P.sexaurelia-Sample_130	591	0.927364864865	0.928934010152	0.928934010152
cox2|P.octaurelia-Sample_1038	592	cox2|P.tetraurelia-Sample_291	594	0.944256756757	0.941077441077	0.944256756757
cox2|P.octaurelia-Sample_1038	592	cox2|Sample_C026	567	0.8125	0.848324514991	0.848324514991
cox2|P.octaurelia-Sample_1038	592	cox2|Sample_M13	579	0.836148648649	0.854922279793	0.854922279793
cox2|P.octaurelia-Sample_1038	592	cox2|Sample_Peniche3I	550	0.777027027027	0.836363636364	0.836363636364
cox2|P.sexaurelia-Sample_130	591	cox2|P.tetraurelia-Sample_291	594	0.93062605753	0.925925925926	0.93062605753
cox2|P.sexaurelia-Sample_130	591	cox2|Sample_C026	567	0.812182741117	0.846560846561	0.846560846561
cox2|P.sexaurelia-Sample_130	591	cox2|Sample_M13	579	0.839255499154	0.856649395509	0.856649395509
cox2|P.sexaurelia-Sample_130	591	cox2|Sample_Peniche3I	550	0.783417935702	0.841818181818	0.841818181818
cox2|P.tetraurelia-Sample_291	594	cox2|Sample_C026	567	0.808080808081	0.846560846561	0.846560846561
cox2|P.tetraurelia-Sample_291	594	cox2|Sample_M13	579	0.823232323232	0.844559585492	0.844559585492
cox2|P.tetraurelia-Sample_291	594	cox2|Sample_Peniche3I	550	0.771043771044	0.832727272727	0.832727272727
cox2|Sample_C026	567	cox2|Sample_M13	579	0.821869488536	0.804835924007	0.821869488536
cox2|Sample_C026	567	cox2|Sample_Peniche3I	550	0.79012345679	0.814545454545	0.814545454545
cox2|Sample_M13	579	cox2|Sample_Peniche3I	550	0.934369602763	0.983636363636	0.983636363636