#seq1	Length	seq2	Length	Similarity_AB	Similarity_BA	Similarity_max
cox1|P.biaurelia-Sample_379	729	cox1|P.caudatum-Sample_C083	728	0.897119341564	0.898351648352	0.898351648352
cox1|P.biaurelia-Sample_379	729	cox1|P.multimicronucleatum-Sample_M04	746	0.871056241427	0.851206434316	0.871056241427
cox1|P.biaurelia-Sample_379	729	cox1|P.sexaurelia-Sample_130	729	0.939643347051	0.939643347051	0.939643347051
cox1|P.biaurelia-Sample_379	729	cox1|P.tetraurelia-Sample_291	746	0.934156378601	0.912868632708	0.934156378601
cox1|P.biaurelia-Sample_379	729	cox1|Sample_C026	757	0.895747599451	0.862615587847	0.895747599451
cox1|P.biaurelia-Sample_379	729	cox1|Sample_M13	747	0.890260631001	0.868808567604	0.890260631001
cox1|P.biaurelia-Sample_379	729	cox1|Sample_Peniche3I	709	0.880658436214	0.905500705219	0.905500705219
cox1|P.caudatum-Sample_C083	728	cox1|P.multimicronucleatum-Sample_M04	746	0.870879120879	0.849865951743	0.870879120879
cox1|P.caudatum-Sample_C083	728	cox1|P.sexaurelia-Sample_130	729	0.898351648352	0.897119341564	0.898351648352
cox1|P.caudatum-Sample_C083	728	cox1|P.tetraurelia-Sample_291	746	0.899725274725	0.878016085791	0.899725274725
cox1|P.caudatum-Sample_C083	728	cox1|Sample_C026	757	0.953296703297	0.91677675033	0.953296703297
cox1|P.caudatum-Sample_C083	728	cox1|Sample_M13	747	0.885989010989	0.863453815261	0.885989010989
cox1|P.caudatum-Sample_C083	728	cox1|Sample_Peniche3I	709	0.885989010989	0.909732016925	0.909732016925
cox1|P.multimicronucleatum-Sample_M04	746	cox1|P.sexaurelia-Sample_130	729	0.857908847185	0.877914951989	0.877914951989
cox1|P.multimicronucleatum-Sample_M04	746	cox1|P.tetraurelia-Sample_291	746	0.853887399464	0.853887399464	0.853887399464
cox1|P.multimicronucleatum-Sample_M04	746	cox1|Sample_C026	757	0.864611260054	0.852047556143	0.864611260054
cox1|P.multimicronucleatum-Sample_M04	746	cox1|Sample_M13	747	0.941018766756	0.939759036145	0.941018766756
cox1|P.multimicronucleatum-Sample_M04	746	cox1|Sample_Peniche3I	709	0.906166219839	0.953455571227	0.953455571227
cox1|P.sexaurelia-Sample_130	729	cox1|P.tetraurelia-Sample_291	746	0.934156378601	0.912868632708	0.934156378601
cox1|P.sexaurelia-Sample_130	729	cox1|Sample_C026	757	0.899862825789	0.866578599736	0.899862825789
cox1|P.sexaurelia-Sample_130	729	cox1|Sample_M13	747	0.898491083676	0.876840696118	0.898491083676
cox1|P.sexaurelia-Sample_130	729	cox1|Sample_Peniche3I	709	0.888888888889	0.913963328632	0.913963328632
cox1|P.tetraurelia-Sample_291	746	cox1|Sample_C026	757	0.878016085791	0.865257595773	0.878016085791
cox1|P.tetraurelia-Sample_291	746	cox1|Sample_M13	747	0.87399463807	0.872824631861	0.87399463807
cox1|P.tetraurelia-Sample_291	746	cox1|Sample_Peniche3I	709	0.86327077748	0.90832157969	0.90832157969
cox1|Sample_C026	757	cox1|Sample_M13	747	0.858652575958	0.870147255689	0.870147255689
cox1|Sample_C026	757	cox1|Sample_Peniche3I	709	0.853368560106	0.911142454161	0.911142454161
cox1|Sample_M13	747	cox1|Sample_Peniche3I	709	0.94109772423	0.991537376587	0.991537376587