#seq1	Length	seq2	Length	Similarity_AB	Similarity_BA	Similarity_max
cob|P.biaurelia-Sample_379	442	cob|P.caudatum-Sample_C083	463	0.91628959276	0.874730021598	0.91628959276
cob|P.biaurelia-Sample_379	442	cob|P.multimicronucleatum-Sample_M04	444	0.866515837104	0.862612612613	0.866515837104
cob|P.biaurelia-Sample_379	442	cob|P.octaurelia-Sample_1038	442	0.9592760181	0.9592760181	0.9592760181
cob|P.biaurelia-Sample_379	442	cob|P.sexaurelia-Sample_130	442	0.957013574661	0.957013574661	0.957013574661
cob|P.biaurelia-Sample_379	442	cob|P.tetraurelia-Sample_291	442	0.941176470588	0.941176470588	0.941176470588
cob|P.biaurelia-Sample_379	442	cob|Sample_C026	457	0.911764705882	0.881838074398	0.911764705882
cob|P.biaurelia-Sample_379	442	cob|Sample_M13	444	0.857466063348	0.853603603604	0.857466063348
cob|P.biaurelia-Sample_379	442	cob|Sample_Peniche3I	444	0.859728506787	0.855855855856	0.859728506787
cob|P.caudatum-Sample_C083	463	cob|P.multimicronucleatum-Sample_M04	444	0.831533477322	0.867117117117	0.867117117117
cob|P.caudatum-Sample_C083	463	cob|P.octaurelia-Sample_1038	442	0.879049676026	0.920814479638	0.920814479638
cob|P.caudatum-Sample_C083	463	cob|P.sexaurelia-Sample_130	442	0.883369330454	0.925339366516	0.925339366516
cob|P.caudatum-Sample_C083	463	cob|P.tetraurelia-Sample_291	442	0.872570194384	0.914027149321	0.914027149321
cob|P.caudatum-Sample_C083	463	cob|Sample_C026	457	0.963282937365	0.975929978118	0.975929978118
cob|P.caudatum-Sample_C083	463	cob|Sample_M13	444	0.833693304536	0.869369369369	0.869369369369
cob|P.caudatum-Sample_C083	463	cob|Sample_Peniche3I	444	0.831533477322	0.867117117117	0.867117117117
cob|P.multimicronucleatum-Sample_M04	444	cob|P.octaurelia-Sample_1038	442	0.862612612613	0.866515837104	0.866515837104
cob|P.multimicronucleatum-Sample_M04	444	cob|P.sexaurelia-Sample_130	442	0.855855855856	0.859728506787	0.859728506787
cob|P.multimicronucleatum-Sample_M04	444	cob|P.tetraurelia-Sample_291	442	0.846846846847	0.850678733032	0.850678733032
cob|P.multimicronucleatum-Sample_M04	444	cob|Sample_C026	457	0.867117117117	0.842450765864	0.867117117117
cob|P.multimicronucleatum-Sample_M04	444	cob|Sample_M13	444	0.961711711712	0.961711711712	0.961711711712
cob|P.multimicronucleatum-Sample_M04	444	cob|Sample_Peniche3I	444	0.961711711712	0.961711711712	0.961711711712
cob|P.octaurelia-Sample_1038	442	cob|P.sexaurelia-Sample_130	442	0.970588235294	0.970588235294	0.970588235294
cob|P.octaurelia-Sample_1038	442	cob|P.tetraurelia-Sample_291	442	0.945701357466	0.945701357466	0.945701357466
cob|P.octaurelia-Sample_1038	442	cob|Sample_C026	457	0.920814479638	0.890590809628	0.920814479638
cob|P.octaurelia-Sample_1038	442	cob|Sample_M13	444	0.864253393665	0.86036036036	0.864253393665
cob|P.octaurelia-Sample_1038	442	cob|Sample_Peniche3I	444	0.866515837104	0.862612612613	0.866515837104
cob|P.sexaurelia-Sample_130	442	cob|P.tetraurelia-Sample_291	442	0.945701357466	0.945701357466	0.945701357466
cob|P.sexaurelia-Sample_130	442	cob|Sample_C026	457	0.927601809955	0.89715536105	0.927601809955
cob|P.sexaurelia-Sample_130	442	cob|Sample_M13	444	0.85520361991	0.851351351351	0.85520361991
cob|P.sexaurelia-Sample_130	442	cob|Sample_Peniche3I	444	0.857466063348	0.853603603604	0.857466063348
cob|P.tetraurelia-Sample_291	442	cob|Sample_C026	457	0.911764705882	0.881838074398	0.911764705882
cob|P.tetraurelia-Sample_291	442	cob|Sample_M13	444	0.846153846154	0.842342342342	0.846153846154
cob|P.tetraurelia-Sample_291	442	cob|Sample_Peniche3I	444	0.846153846154	0.842342342342	0.846153846154
cob|Sample_C026	457	cob|Sample_M13	444	0.844638949672	0.869369369369	0.869369369369
cob|Sample_C026	457	cob|Sample_Peniche3I	444	0.844638949672	0.869369369369	0.869369369369
cob|Sample_M13	444	cob|Sample_Peniche3I	444	0.986486486486	0.986486486486	0.986486486486