cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_C026-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_C026-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_C026-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_M13-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_M13-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_M13-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_Peniche3I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_Peniche3I-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_Peniche3I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_TRB101-4-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_TRB101-4-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_TRB101-4-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.wig -uniqueBAM -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_C026-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_C026-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_C026-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_M13-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_M13-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_M13-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_Peniche3I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_Peniche3I-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_Peniche3I-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle
cd /N/dc2/projects/marinovg/2015-09-07-assemblies/mito/2016-03-17-realignment; python /N/dc2/projects/marinovg/code/makewigglefromBAM-NH.py ====  Sample_TRB101-4-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.bam /N/dc2/projects/marinovg/2015-09-07-assemblies/Sample_TRB101-4-SPAdes-3.5.0-trimmed/scaffolds.chrom.sizes Sample_TRB101-4-SPAdes-3.5.0-trimmed.realignment.bowtie.PE-v3.unique.0mismatches.wig -uniqueBAM -mismatchesMD 0 -notitle