#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh2|P.sexaurelia-Sample_130	nadh2|P.biaurelia-Sample_379	0.0779946	0.881776	0.0884517	486	191.702	294.298	107	85.3756	21.6244
nadh2|P.sexaurelia-Sample_130	nadh2|P.tetraurelia-Sample_291	0.111483	0.906027	0.123046	495	194.826	300.174	119	88.2458	30.7542
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_M13	0.722391	0.27588	2.6185	453	85.6878	367.312	173	18.2553	154.745
nadh2|P.sexaurelia-Sample_130	nadh2|P.multimicronucleatum-Sample_M04	0.599301	0.284759	2.10459	390	70.7536	319.246	139	15.6321	123.368
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_C026	0.267886	1.30656	0.205031	498	141.9	356.1	151	72.547	78.453
nadh2|P.sexaurelia-Sample_130	nadh2|P.caudatum-Sample_C104	0.280529	1.43764	0.195132	501	147.483	353.517	159	78.4763	80.5237
nadh2|P.sexaurelia-Sample_130	nadh2|Sample_Peniche3I	0.391075	1.09037	0.358663	498	167.113	330.887	194	96.0474	97.9526
nadh2|P.sexaurelia-Sample_130	nadh2|P.octaurelia-Sample_1038	0.068764	0.82663	0.083186	519	188.266	330.734	104	82.3855	21.6145
nadh2|P.biaurelia-Sample_379	nadh2|P.tetraurelia-Sample_291	0.0925411	0.61616	0.15019	486	210.803	275.197	103	79.3576	23.6424
nadh2|P.biaurelia-Sample_379	nadh2|Sample_M13	0.276821	1.30981	0.211344	483	132.171	350.829	161	81.8405	79.1595
nadh2|P.biaurelia-Sample_379	nadh2|P.multimicronucleatum-Sample_M04	0.377372	1.92874	0.195657	447	128.527	318.473	164	73.0454	90.9546
nadh2|P.biaurelia-Sample_379	nadh2|Sample_C026	0.203523	1.68132	0.121049	483	169.082	313.918	144	89.1787	54.8213
nadh2|P.biaurelia-Sample_379	nadh2|P.caudatum-Sample_C104	0.471413	0.335203	1.40635	423	115.434	307.566	127	27.9459	99.0541
nadh2|P.biaurelia-Sample_379	nadh2|Sample_Peniche3I	0.310341	1.82026	0.170492	480	141.589	338.411	162	78.3501	83.6499
nadh2|P.biaurelia-Sample_379	nadh2|P.octaurelia-Sample_1038	0.0419576	0.534484	0.0785012	486	214.412	271.588	85	73.9857	11.0143
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_M13	0.330289	1.26255	0.261604	489	145.923	343.077	178	89.1145	88.8855
nadh2|P.tetraurelia-Sample_291	nadh2|P.multimicronucleatum-Sample_M04	0.351591	3.97303	0.0884944	426	126.37	299.63	156	75.0575	80.9425
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_C026	0.505208	0.309178	1.63403	432	120.531	311.469	134	28.0346	105.965
nadh2|P.tetraurelia-Sample_291	nadh2|P.caudatum-Sample_C104	0.50825	0.381921	1.33077	435	122.186	312.814	140	32.8503	107.15
nadh2|P.tetraurelia-Sample_291	nadh2|Sample_Peniche3I	0.35811	1.16826	0.306534	495	149.695	345.305	184	88.6241	95.3759
nadh2|P.tetraurelia-Sample_291	nadh2|P.octaurelia-Sample_1038	0.0618372	0.41152	0.150266	498	224.439	273.561	82	65.9245	16.0755
nadh2|Sample_M13	nadh2|P.multimicronucleatum-Sample_M04	0.141177	0.618554	0.228238	462	45.2008	416.799	71	18.0266	52.9734
nadh2|Sample_M13	nadh2|Sample_C026	0.257173	0.217088	1.18465	417	51.202	365.798	86	8.8415	77.1585
nadh2|Sample_M13	nadh2|P.caudatum-Sample_C104	0.258205	0.167212	1.54417	420	57.0197	362.98	85	8.0484	76.9516
nadh2|Sample_M13	nadh2|Sample_Peniche3I	0.0502319	0.27325	0.183831	510	95.1035	414.896	41	21.0234	19.9766
nadh2|Sample_M13	nadh2|P.octaurelia-Sample_1038	0.487318	0.416508	1.17001	441	85.471	355.529	145	24.5227	120.477
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_C026	0.194941	2.74346	0.0710567	441	38.7816	402.218	101	33.5282	67.4718
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.caudatum-Sample_C104	0.181835	2.72807	0.0666531	444	37.9942	406.006	94	29.7205	64.2795
nadh2|P.multimicronucleatum-Sample_M04	nadh2|Sample_Peniche3I	0.157706	1.02527	0.153819	462	48.7777	413.222	82	24.0452	57.9548
nadh2|P.multimicronucleatum-Sample_M04	nadh2|P.octaurelia-Sample_1038	0.468577	0.47994	0.976325	402	94.0776	307.922	129	27.4863	101.514
nadh2|Sample_C026	nadh2|P.caudatum-Sample_C104	0.0312211	0.260912	0.119661	573	116.165	456.835	39	25.1063	13.8937
nadh2|Sample_C026	nadh2|Sample_Peniche3I	0.191039	0.825506	0.23142	489	63.3209	425.679	100	29.9265	70.0735
nadh2|Sample_C026	nadh2|P.octaurelia-Sample_1038	0.199137	0.96849	0.205616	573	175.874	397.126	151	82.7175	68.2825
nadh2|P.caudatum-Sample_C104	nadh2|Sample_Peniche3I	0.20647	0.535405	0.385633	492	65.3303	426.67	99	23.6166	75.3834
nadh2|P.caudatum-Sample_C104	nadh2|P.octaurelia-Sample_1038	0.217805	0.980457	0.222146	573	187.316	385.684	159	87.4519	71.5481
nadh2|Sample_Peniche3I	nadh2|P.octaurelia-Sample_1038	0.272211	0.811848	0.335297	474	118.606	355.394	129	49.7414	79.2586
#Average Ka: 0.270103458333
#Average Ks: 0.994279111111
#Average KaKs: 0.526677975