#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.sexaurelia-Sample_130	0.00662454	2.70072	0.00245288	189	36.6335	152.366	34	32.9975	1.00246
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.multimicronucleatum-Sample_M04	0.140898	1.96321	0.0717693	183	55.9373	127.063	55	38.8914	16.1086
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_C026	0.0956591	2.92378	0.0327176	192	49.3224	142.678	50	37.2506	12.7494
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.caudatum-Sample_C104	0.0889609	2.9126	0.0305435	189	48.5924	140.408	52	40.2682	11.7318
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_Peniche3I	0.168065	1.32982	0.126381	189	61.7907	127.209	53	34.0682	18.9318
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.tetraurelia-Sample_291	0.0241829	1.22208	0.0197882	192	62.9441	129.056	41	37.9535	3.04652
nadh1_b|P.biaurelia-Sample_379	nadh1_b|Sample_M13	0.141575	1.99865	0.0708352	189	55.9277	133.072	56	39.026	16.974
nadh1_b|P.biaurelia-Sample_379	nadh1_b|P.octaurelia-Sample_1038	0.0386508	1.02386	0.0377502	189	75.6491	113.351	40	35.7801	4.21986
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.multimicronucleatum-Sample_M04	0.127373	3.07355	0.0414417	180	60.2239	119.776	64	50.1036	13.8964
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_C026	0.0888157	2.94332	0.0301754	189	50.6239	138.376	60	48.441	11.559
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.caudatum-Sample_C104	0.076649	99	0.000774233	189	50.1486	138.851	62	51.9009	10.0991
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_Peniche3I	0.136682	3.08978	0.0442369	189	61.5415	127.458	65	49.2044	15.7956
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.tetraurelia-Sample_291	0.0174623	1.424	0.0122628	189	71.6438	117.356	38	35.9861	2.01392
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|Sample_M13	0.12863	3.07562	0.0418224	189	60.3902	128.61	64	48.9273	15.0727
nadh1_b|P.sexaurelia-Sample_130	nadh1_b|P.octaurelia-Sample_1038	0.0265882	0.776662	0.034234	189	71.351	117.649	33	29.9531	3.04689
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_C026	0.0492338	1.64278	0.0299699	183	14.8174	168.183	17	9	8
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.caudatum-Sample_C104	0.0575457	1.47838	0.0389249	183	20.1385	162.862	22	13	9
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_Peniche3I	0.00636627	99	6.43057e-05	180	20.6717	159.328	22	20.9908	1.00916
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.tetraurelia-Sample_291	0.152736	3.70764	0.0411951	180	63.2585	116.741	63	47.1056	15.8944
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|Sample_M13	0.00629122	2.19207	0.00286998	180	18.5926	161.407	18	16.9897	1.01028
nadh1_b|P.multimicronucleatum-Sample_M04	nadh1_b|P.octaurelia-Sample_1038	0.143174	2.14249	0.066826	183	66.4185	116.582	62	46.9515	15.0485
nadh1_b|Sample_C026	nadh1_b|P.caudatum-Sample_C104	0.00581034	3.20679	0.00181189	189	16.2256	172.774	13	12	1
nadh1_b|Sample_C026	nadh1_b|Sample_Peniche3I	0.0636376	99	0.000642804	189	20.0362	168.964	31	20.7144	10.2856
nadh1_b|Sample_C026	nadh1_b|P.tetraurelia-Sample_291	0.106341	3.02867	0.0351116	192	56.7256	135.274	59	45.6649	13.3351
nadh1_b|Sample_C026	nadh1_b|Sample_M13	0.05505	99	0.000556061	189	16.6937	172.306	26	16.8762	9.1238
nadh1_b|Sample_C026	nadh1_b|P.octaurelia-Sample_1038	0.096331	3.01842	0.0319144	189	55.9557	133.044	58	45.9992	12.0008
nadh1_b|P.caudatum-Sample_C104	nadh1_b|Sample_Peniche3I	0.0782411	2.44217	0.0320376	189	25.9513	163.049	34	21.9239	12.0761
nadh1_b|P.caudatum-Sample_C104	nadh1_b|P.tetraurelia-Sample_291	0.0996229	3.00724	0.0331277	189	55.1278	133.872	61	48.5668	12.4332
nadh1_b|P.caudatum-Sample_C104	nadh1_b|Sample_M13	0.0649786	2.32154	0.0279894	189	22.0958	166.904	27	16.6402	10.3598
nadh1_b|P.caudatum-Sample_C104	nadh1_b|P.octaurelia-Sample_1038	0.0863404	2.98692	0.0289062	189	53.6543	135.346	61	49.9774	11.0226
nadh1_b|Sample_Peniche3I	nadh1_b|P.tetraurelia-Sample_291	0.158352	3.12004	0.0507532	189	64.0752	124.925	68	50.3929	17.6071
nadh1_b|Sample_Peniche3I	nadh1_b|Sample_M13	0.00604048	1.04956	0.00575525	189	22.7828	166.217	9	8	1
nadh1_b|Sample_Peniche3I	nadh1_b|P.octaurelia-Sample_1038	0.159587	2.76101	0.0578004	189	66.4071	122.593	66	48.5508	17.4492
nadh1_b|P.tetraurelia-Sample_291	nadh1_b|Sample_M13	0.146252	3.10464	0.0471074	189	62.7731	126.227	67	50.4444	16.5556
nadh1_b|P.tetraurelia-Sample_291	nadh1_b|P.octaurelia-Sample_1038	0.0227318	0.669286	0.0339642	189	55.016	133.984	24	21	3
nadh1_b|Sample_M13	nadh1_b|P.octaurelia-Sample_1038	0.148069	3.14018	0.0471532	189	65.8189	123.181	69	52.6091	16.3909
#Average Ka: 0.0838763513889
#Average Ks: 13.0965966111
#Average KaKs: 0.0336574112139