#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cox1|P.tetraurelia-Sample_291	cox1|Sample_C026	0.409973	0.141596	2.89538	1995	649.895	1345.1	494	81.2109	412.789
cox1|P.tetraurelia-Sample_291	cox1|P.caudatum-Sample_C104	0.0711456	4.62222	0.0153921	2211	474.829	1736.17	565	447.271	117.729
cox1|P.tetraurelia-Sample_291	cox1|P.biaurelia-Sample_379	0.0317727	1.58333	0.020067	2172	643.896	1528.1	403	355.595	47.405
cox1|P.tetraurelia-Sample_291	cox1|P.multimicronucleatum-Sample_M04	0.425897	0.141086	3.01871	1965	601.988	1363.01	506	74.5922	431.408
cox1|P.tetraurelia-Sample_291	cox1|P.sexaurelia-Sample_130	0.338698	0.073012	4.63894	2028	556.332	1471.67	429	38.2115	390.788
cox1|P.tetraurelia-Sample_291	cox1|Sample_M13	0.420479	0.116493	3.60946	1986	651.47	1334.53	486	68.1796	417.82
cox1|P.tetraurelia-Sample_291	cox1|Sample_Peniche3I	0.0504652	4.6269	0.0109069	2124	477.804	1646.2	513	432.739	80.2612
cox1|Sample_C026	cox1|P.caudatum-Sample_C104	0.0370761	1.52998	0.0242331	2271	313.179	1957.82	258	187.219	70.7814
cox1|Sample_C026	cox1|P.biaurelia-Sample_379	0.385596	0.105738	3.64672	1938	634.112	1303.89	442	61.2466	380.753
cox1|Sample_C026	cox1|P.multimicronucleatum-Sample_M04	0.0672411	4.15153	0.0161967	2238	253.501	1984.5	363	235.526	127.474
cox1|Sample_C026	cox1|P.sexaurelia-Sample_130	0.366261	0.121833	3.00626	1947	617.517	1329.48	442	67.4759	374.524
cox1|Sample_C026	cox1|Sample_M13	0.178596	0.0830125	2.15144	1974	533.603	1440.4	269	41.0931	227.907
cox1|Sample_C026	cox1|Sample_Peniche3I	0.171751	0.0654143	2.62559	1869	547.485	1321.51	236	33.8021	202.198
cox1|P.caudatum-Sample_C104	cox1|P.biaurelia-Sample_379	0.0603725	4.6295	0.0130408	2175	479.463	1695.54	508	409.799	98.2015
cox1|P.caudatum-Sample_C104	cox1|P.multimicronucleatum-Sample_M04	0.0614342	4.14897	0.0148071	2208	252.64	1955.36	347	231.817	115.183
cox1|P.caudatum-Sample_C104	cox1|P.sexaurelia-Sample_130	0.354822	0.149036	2.38079	1956	601.149	1354.85	452	78.8776	373.122
cox1|P.caudatum-Sample_C104	cox1|Sample_M13	0.192217	0.0789492	2.4347	1971	574.604	1396.4	278	42.3148	235.685
cox1|P.caudatum-Sample_C104	cox1|Sample_Peniche3I	0.0489883	4.14141	0.0118289	2118	250.105	1867.89	288	199.502	88.4979
cox1|P.biaurelia-Sample_379	cox1|P.multimicronucleatum-Sample_M04	0.375928	0.123052	3.05503	1920	609.626	1310.37	444	67.1477	376.852
cox1|P.biaurelia-Sample_379	cox1|P.sexaurelia-Sample_130	0.324304	0.0505203	6.41928	2004	562.111	1441.89	396	27.2137	368.786
cox1|P.biaurelia-Sample_379	cox1|Sample_M13	0.3971	0.0979182	4.05543	1974	661.98	1312.02	453	59.2271	393.773
cox1|P.biaurelia-Sample_379	cox1|Sample_Peniche3I	0.0502806	4.55839	0.0110304	2127	436.089	1690.91	472	389.831	82.1691
cox1|P.multimicronucleatum-Sample_M04	cox1|P.sexaurelia-Sample_130	0.0635613	4.61905	0.0137607	2172	472.827	1699.17	523	419.634	103.366
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_M13	0.0285573	4.04758	0.00705539	2238	220.694	2017.31	230	173.513	56.4869
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_Peniche3I	0.0181946	3.26574	0.00557136	2121	214.534	1906.47	187	152.744	34.2561
cox1|P.sexaurelia-Sample_130	cox1|Sample_M13	0.395168	0.117724	3.35673	1962	606.338	1355.66	469	64.0541	404.946
cox1|P.sexaurelia-Sample_130	cox1|Sample_Peniche3I	0.0491348	4.60821	0.0106624	2127	466.043	1660.96	503	424.125	78.8752
cox1|Sample_M13	cox1|Sample_Peniche3I	0.00370934	0.938341	0.00395309	2127	233.26	1893.74	104	96.9959	7.00409
#Average Ka: 0.192097272857
#Average Ks: 1.89059055357
#Average KaKs: 1.69546306929