#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
atp9|Sample_Peniche3I	atp9|Sample_C026	0.0170182	1.09577	0.0155309	225	44.9321	180.068	27	23.9746	3.02544
atp9|Sample_Peniche3I	atp9|P.tetraurelia-Sample_291	0.0197186	1.70989	0.0115321	216	60.8757	155.124	44	40.9861	3.01387
atp9|Sample_Peniche3I	atp9|P.sexaurelia-Sample_130	0.0190915	1.32498	0.0144089	225	64.2877	160.712	43	39.9754	3.02459
atp9|Sample_Peniche3I	atp9|P.multimicronucleatum-Sample_M04	NA	0.232031	-0	225	37.408	187.592	7	7	NA
atp9|Sample_Peniche3I	atp9|P.octaurelia-Sample_1038	0.0195831	1.30845	0.0149666	216	59.99	156.01	35	31.9894	3.01059
atp9|Sample_Peniche3I	atp9|P.caudatum-Sample_C104	0.0222686	0.804799	0.0276698	225	40.6478	184.352	23	18.9671	4.03292
atp9|Sample_Peniche3I	atp9|P.biaurelia-Sample_379	0.0192714	1.96205	0.0098221	225	66.0739	158.926	40	36.9813	3.0187
atp9|Sample_Peniche3I	atp9|Sample_M13	NA	0.0716655	-0	225	43.893	181.107	3	3	NA
atp9|Sample_C026	atp9|P.tetraurelia-Sample_291	NA	1.56321	6.43994e-12	216	53.2966	162.703	35	35	NA
atp9|Sample_C026	atp9|P.sexaurelia-Sample_130	0.207176	0.0188	11.02	228	53.861	174.139	32	1	31
atp9|Sample_C026	atp9|P.multimicronucleatum-Sample_M04	0.0320946	2.06956	0.0155079	231	38.3688	192.631	33	26.9542	6.04577
atp9|Sample_C026	atp9|P.octaurelia-Sample_1038	NA	1.9194	4.61125e-12	216	46.2444	169.756	32	32	NA
atp9|Sample_C026	atp9|P.caudatum-Sample_C104	0.015838	0.217841	0.0727047	231	39.5439	191.456	10	7	3
atp9|Sample_C026	atp9|P.biaurelia-Sample_379	0.0321987	1.08628	0.0296412	234	72.3485	161.652	42	36.9316	5.06837
atp9|Sample_C026	atp9|Sample_M13	0.0173741	0.849576	0.0204503	225	48.1198	176.88	26	22.9667	3.03325
atp9|P.tetraurelia-Sample_291	atp9|P.sexaurelia-Sample_130	NA	0.256155	4.76084e-08	216	69.0718	146.928	14	14	1.79181e-06
atp9|P.tetraurelia-Sample_291	atp9|P.multimicronucleatum-Sample_M04	0.0195451	2.0968	0.00932138	216	59.6256	156.374	45	41.9882	3.01177
atp9|P.tetraurelia-Sample_291	atp9|P.octaurelia-Sample_1038	NA	0.208715	-0	216	60.3766	155.623	11	11	NA
atp9|P.tetraurelia-Sample_291	atp9|P.caudatum-Sample_C104	NA	1.66995	1.71037e-11	216	55.2999	160.7	37	37	NA
atp9|P.tetraurelia-Sample_291	atp9|P.biaurelia-Sample_379	NA	0.314756	4.95386e-09	216	61.1564	154.844	14	14	NA
atp9|P.tetraurelia-Sample_291	atp9|Sample_M13	0.0199008	1.46152	0.0136165	216	62.1687	153.831	43	39.984	3.01596
atp9|P.sexaurelia-Sample_130	atp9|P.multimicronucleatum-Sample_M04	0.0544617	1.50224	0.0362536	240	64.4596	175.54	51	41.8215	9.17853
atp9|P.sexaurelia-Sample_130	atp9|P.octaurelia-Sample_1038	NA	0.22649	2.32521e-11	216	70.3835	145.617	13	13	NA
atp9|P.sexaurelia-Sample_130	atp9|P.caudatum-Sample_C104	0.00607897	1.60794	0.00378059	228	55.8217	172.178	38	36.9598	1.04019
atp9|P.sexaurelia-Sample_130	atp9|P.biaurelia-Sample_379	NA	0.324993	2.27595e-09	231	73.789	157.211	18	18	NA
atp9|P.sexaurelia-Sample_130	atp9|Sample_M13	0.0192401	1.72377	0.0111616	225	65.81	159.19	42	38.9811	3.01892
atp9|P.multimicronucleatum-Sample_M04	atp9|P.octaurelia-Sample_1038	0.0191884	3.18285	0.00602867	216	57.1257	158.874	38	34.9951	3.00491
atp9|P.multimicronucleatum-Sample_M04	atp9|P.caudatum-Sample_C104	0.0209683	1.38286	0.015163	231	35.2685	195.731	26	21.9648	4.03519
atp9|P.multimicronucleatum-Sample_M04	atp9|P.biaurelia-Sample_379	0.0439287	1.33598	0.0328812	234	65.4901	168.51	48	40.8453	7.15469
atp9|P.multimicronucleatum-Sample_M04	atp9|Sample_M13	NA	0.3318	-0	225	38.6629	186.337	10	10	NA
atp9|P.octaurelia-Sample_1038	atp9|P.caudatum-Sample_C104	NA	2.11217	1.44083e-11	216	48.2183	167.782	34	34	NA
atp9|P.octaurelia-Sample_1038	atp9|P.biaurelia-Sample_379	NA	0.176124	-0	216	73.8346	142.165	11	11	NA
atp9|P.octaurelia-Sample_1038	atp9|Sample_M13	0.0198378	0.860883	0.0230436	216	61.5646	154.435	32	28.9816	3.01841
atp9|P.caudatum-Sample_C104	atp9|P.biaurelia-Sample_379	0.0119076	1.37436	0.00866411	231	60.3054	170.695	40	37.9916	2.00836
atp9|P.caudatum-Sample_C104	atp9|Sample_M13	0.0227546	0.751171	0.0302921	225	44.358	180.642	24	19.9636	4.03645
atp9|P.biaurelia-Sample_379	atp9|Sample_M13	0.0195237	1.05867	0.0184418	225	67.6045	157.395	37	33.9718	3.02824
#Average Ka: 0.0303899378261
#Average Ks: 1.33856695652
#Average KaKs: 0.498299245652