#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_C026	0.501248	0.593845	0.844072	162	41.7712	120.229	58	14.9788	43.0212
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_Peniche3I	0.572989	0.247226	2.31768	153	37.1574	115.843	52	7.22981	44.7702
Ymf78|P.biaurelia-Sample_379	Ymf78|P.sexaurelia-Sample_130	0.0334309	0.783568	0.042665	198	73.6289	124.371	35	30.9536	4.04643
Ymf78|P.biaurelia-Sample_379	Ymf78|P.multimicronucleatum-Sample_M04	0.449275	0.492458	0.912312	183	42.8491	140.151	61	14.3425	46.6575
Ymf78|P.biaurelia-Sample_379	Ymf78|P.octaurelia-Sample_1038	0.0687762	0.962913	0.0714251	216	75.6519	140.348	43	33.8398	9.16019
Ymf78|P.biaurelia-Sample_379	Ymf78|P.tetraurelia-Sample_291	0.336481	0.0902636	3.72776	198	65.3353	132.665	39	5.50495	33.4951
Ymf78|P.biaurelia-Sample_379	Ymf78|P.caudatum-Sample_C104	0.461858	0.868562	0.53175	174	39.2258	134.774	62	16.1155	45.8845
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_M13	0.509248	0.43285	1.1765	186	49.9777	136.022	64	15.1696	48.8304
Ymf78|Sample_C026	Ymf78|Sample_Peniche3I	0.363397	1.71726	0.211615	183	21.1939	161.806	58	11.9213	46.0787
Ymf78|Sample_C026	Ymf78|P.sexaurelia-Sample_130	0.455404	1.50381	0.302834	195	49.4553	145.545	81	32.0971	48.9029
Ymf78|Sample_C026	Ymf78|P.multimicronucleatum-Sample_M04	0.43005	0.509817	0.843537	177	38.1644	138.836	58	13.1572	44.8428
Ymf78|Sample_C026	Ymf78|P.octaurelia-Sample_1038	0.589063	0.423059	1.39239	159	46.6846	112.315	58	13.5796	44.4204
Ymf78|Sample_C026	Ymf78|P.tetraurelia-Sample_291	0.532547	0.284322	1.87304	156	46.0695	109.93	51	10.5014	40.4986
Ymf78|Sample_C026	Ymf78|P.caudatum-Sample_C104	0.044969	0.617175	0.0728626	207	44.196	162.804	24	16.9648	7.03524
Ymf78|Sample_C026	Ymf78|Sample_M13	0.354418	2.82597	0.125415	189	27.719	161.281	61	15.9525	45.0475
Ymf78|Sample_Peniche3I	Ymf78|P.sexaurelia-Sample_130	0.700841	0.216135	3.24262	153	46.8023	106.198	54	8.45228	45.5477
Ymf78|Sample_Peniche3I	Ymf78|P.multimicronucleatum-Sample_M04	0.265003	0.484839	0.54658	189	32.2713	156.729	45	10.2746	34.7254
Ymf78|Sample_Peniche3I	Ymf78|P.octaurelia-Sample_1038	0.507641	1.10518	0.459328	183	55.6037	127.396	78	32.1485	45.8515
Ymf78|Sample_Peniche3I	Ymf78|P.tetraurelia-Sample_291	0.879343	0.136049	6.46341	156	49.5062	106.494	57	5.93059	51.0694
Ymf78|Sample_Peniche3I	Ymf78|P.caudatum-Sample_C104	0.401597	0.732559	0.54821	180	26.9249	153.075	58	11.0376	46.9624
Ymf78|Sample_Peniche3I	Ymf78|Sample_M13	0.141972	0.357661	0.396945	189	35.0109	153.989	29	9.20785	19.7922
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.multimicronucleatum-Sample_M04	0.52024	1.43592	0.362304	195	51.7222	143.278	86	33.0735	52.9265
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.octaurelia-Sample_1038	0.0629077	1.26706	0.0496485	198	64.7332	133.267	40	32	8
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.tetraurelia-Sample_291	0.0762186	1.40215	0.0543585	198	57.4694	140.531	41	30.8461	10.1539
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.caudatum-Sample_C104	0.581216	0.992676	0.585505	195	55.1974	139.803	86	30.3786	55.6214
Ymf78|P.sexaurelia-Sample_130	Ymf78|Sample_M13	0.40617	0.454695	0.893282	168	58.3233	109.677	52	18.1756	33.8244
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.octaurelia-Sample_1038	0.63652	0.491276	1.29565	189	39.2442	149.756	75	13.5274	61.4726
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.tetraurelia-Sample_291	0.437377	1.36611	0.320162	210	49.5775	160.423	78	26.0095	51.9905
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.caudatum-Sample_C104	0.381528	0.489974	0.778669	180	37.2184	142.782	54	12.315	41.685
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|Sample_M13	0.215016	0.638643	0.336676	216	36.5022	179.498	47	13.7938	33.2062
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.tetraurelia-Sample_291	0.208528	0.0900709	2.31515	204	62.4579	141.542	30	5.28085	24.7192
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.caudatum-Sample_C104	0.636183	0.298615	2.13045	189	42.9293	146.071	71	10.3069	60.6931
Ymf78|P.octaurelia-Sample_1038	Ymf78|Sample_M13	0.411612	2.04975	0.200811	216	55.3538	160.646	89	38.8158	50.1842
Ymf78|P.tetraurelia-Sample_291	Ymf78|P.caudatum-Sample_C104	0.506011	0.639221	0.791605	174	42.6344	131.366	64	16.6131	47.3869
Ymf78|P.tetraurelia-Sample_291	Ymf78|Sample_M13	0.2983	1.22261	0.243986	198	44.6479	153.352	64	26.926	37.074
Ymf78|P.caudatum-Sample_C104	Ymf78|Sample_M13	0.360323	0.466089	0.773077	201	32.9722	168.028	58	10.3841	47.6159
#Average Ka: 0.398269483333
#Average Ks: 0.796955041667
#Average KaKs: 1.03428568611