#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf68|P.tetraurelia-Sample_291	Ymf68|Sample_M13	0.393215	0.217777	1.80559	1038	250.057	787.943	279	45.6977	233.302
Ymf68|P.tetraurelia-Sample_291	Ymf68|Sample_Peniche3I	0.404297	0.180729	2.23703	1026	265.604	760.396	270	41.2307	228.769
Ymf68|P.tetraurelia-Sample_291	Ymf68|P.caudatum-Sample_C104	0.148152	1.7955	0.0825133	1155	299.475	855.525	318	204.108	113.892
Ymf68|P.tetraurelia-Sample_291	Ymf68|Sample_C026	0.420286	0.166663	2.52176	1053	299.634	753.366	275	42.8204	232.18
Ymf68|P.tetraurelia-Sample_291	Ymf68|P.octaurelia-Sample_1038	0.0427753	1.0665	0.0401082	1161	373.412	787.588	208	175.37	32.6303
Ymf68|P.tetraurelia-Sample_291	Ymf68|P.multimicronucleatum-Sample_M04	0.448348	0.135138	3.31771	1041	291.582	749.418	278	35.021	242.979
Ymf68|P.tetraurelia-Sample_291	Ymf68|P.sexaurelia-Sample_130	0.0375394	1.14006	0.0329276	1161	376.973	784.027	215	186.393	28.6069
Ymf68|P.tetraurelia-Sample_291	Ymf68|P.biaurelia-Sample_379	0.0442596	0.77664	0.0569886	1161	385.764	775.236	199	165.815	33.1848
Ymf68|Sample_M13	Ymf68|Sample_Peniche3I	0.0090712	0.741668	0.0122308	1161	157.902	1003.1	75	65.9613	9.0387
Ymf68|Sample_M13	Ymf68|P.caudatum-Sample_C104	0.269047	0.112292	2.39595	1029	317.115	711.885	190	32.208	157.792
Ymf68|Sample_M13	Ymf68|Sample_C026	0.29001	0.0966548	3.00047	1044	324.451	719.549	198	28.5488	169.451
Ymf68|Sample_M13	Ymf68|P.octaurelia-Sample_1038	0.385718	0.214672	1.79677	1041	259.999	781.001	276	46.7116	229.288
Ymf68|Sample_M13	Ymf68|P.multimicronucleatum-Sample_M04	0.0499052	1.59913	0.0312078	1161	138.871	1022.13	141	91.8029	49.1971
Ymf68|Sample_M13	Ymf68|P.sexaurelia-Sample_130	0.141528	4.14021	0.0341839	1131	249.705	881.295	312	199.158	112.842
Ymf68|Sample_M13	Ymf68|P.biaurelia-Sample_379	0.474518	0.131933	3.59667	1029	310.915	718.085	277	36.6638	240.336
Ymf68|Sample_Peniche3I	Ymf68|P.caudatum-Sample_C104	0.269953	0.13211	2.0434	1044	319.31	724.69	198	37.3942	160.606
Ymf68|Sample_Peniche3I	Ymf68|Sample_C026	0.297489	0.0997177	2.98331	1044	341.119	702.881	199	30.8866	168.113
Ymf68|Sample_Peniche3I	Ymf68|P.octaurelia-Sample_1038	0.438788	0.130572	3.3605	1050	311.974	738.026	272	36.2734	235.727
Ymf68|Sample_Peniche3I	Ymf68|P.multimicronucleatum-Sample_M04	0.0527564	4.21607	0.0125132	1161	128.316	1032.68	135	82.5626	52.4374
Ymf68|Sample_Peniche3I	Ymf68|P.sexaurelia-Sample_130	0.136957	4.09791	0.0334212	1134	236.01	897.99	305	193.425	111.575
Ymf68|Sample_Peniche3I	Ymf68|P.biaurelia-Sample_379	0.361831	0.184267	1.96362	1035	249.817	785.183	258	39.3786	218.621
Ymf68|P.caudatum-Sample_C104	Ymf68|Sample_C026	0.0276304	1.12533	0.0245531	1164	209.822	954.178	133	107.17	25.8301
Ymf68|P.caudatum-Sample_C104	Ymf68|P.octaurelia-Sample_1038	0.424253	0.147618	2.87399	1059	291.99	767.01	277	37.6829	239.317
Ymf68|P.caudatum-Sample_C104	Ymf68|P.multimicronucleatum-Sample_M04	0.122095	2.83534	0.0430619	1152	150.145	1001.85	222	110.04	111.96
Ymf68|P.caudatum-Sample_C104	Ymf68|P.sexaurelia-Sample_130	0.13585	3.07186	0.0442241	1161	281.481	879.519	316	207.597	108.403
Ymf68|P.caudatum-Sample_C104	Ymf68|P.biaurelia-Sample_379	0.131329	2.24594	0.058474	1134	305.412	828.588	276	177.052	98.948
Ymf68|Sample_C026	Ymf68|P.octaurelia-Sample_1038	0.238001	0.618772	0.384634	1098	287.678	810.322	271	108.999	162.001
Ymf68|Sample_C026	Ymf68|P.multimicronucleatum-Sample_M04	0.225373	0.161624	1.39443	1032	227.698	804.302	187	32.5855	154.414
Ymf68|Sample_C026	Ymf68|P.sexaurelia-Sample_130	0.132014	4.16915	0.0316645	1161	259.527	901.473	307	198.673	108.327
Ymf68|Sample_C026	Ymf68|P.biaurelia-Sample_379	0.136802	1.43859	0.0950939	1140	290.006	849.994	291	185.557	105.443
Ymf68|P.octaurelia-Sample_1038	Ymf68|P.multimicronucleatum-Sample_M04	0.131125	2.34906	0.0558203	1134	255.406	878.594	288	183.197	104.803
Ymf68|P.octaurelia-Sample_1038	Ymf68|P.sexaurelia-Sample_130	0.028375	1.48081	0.0191619	1161	285.935	875.065	209	184.676	24.3237
Ymf68|P.octaurelia-Sample_1038	Ymf68|P.biaurelia-Sample_379	0.0388089	0.888553	0.0436765	1161	373.76	787.24	199	169.342	29.6575
Ymf68|P.multimicronucleatum-Sample_M04	Ymf68|P.sexaurelia-Sample_130	0.138693	4.1142	0.0337109	1161	241.195	919.805	319	203.497	115.503
Ymf68|P.multimicronucleatum-Sample_M04	Ymf68|P.biaurelia-Sample_379	0.350651	0.222552	1.5756	1044	246.857	797.143	261	45.5819	215.418
Ymf68|P.sexaurelia-Sample_130	Ymf68|P.biaurelia-Sample_379	0.0315954	0.719187	0.0439321	1161	433.939	727.061	202	179.61	22.39
#Average Ka: 0.205806661111
#Average Ks: 1.30457776389
#Average KaKs: 1.05780282778