#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf57|P.sexaurelia-Sample_130	Ymf57|P.caudatum-Sample_C104	0.134145	0.763545	0.175687	231	45.1743	185.826	43	20.3648	22.6352
Ymf57|P.sexaurelia-Sample_130	Ymf57|P.biaurelia-Sample_379	0.126126	1.28739	0.0979702	228	55.6317	172.368	54	34.2263	19.7737
Ymf57|P.sexaurelia-Sample_130	Ymf57|P.octaurelia-Sample_1038	0.0550516	2.64562	0.0208086	231	34.0384	196.962	40	29.5955	10.4045
Ymf57|P.sexaurelia-Sample_130	Ymf57|Sample_M13	0.226151	0.32424	0.697483	198	41.4244	156.576	40	10.3904	29.6096
Ymf57|P.sexaurelia-Sample_130	Ymf57|P.multimicronucleatum-Sample_M04	0.158936	0.831129	0.191229	228	31.9144	196.086	43	15.1883	27.8117
Ymf57|P.sexaurelia-Sample_130	Ymf57|Sample_C026	0.127437	1.37543	0.0926528	231	37.7745	193.226	44	21.5038	22.4962
Ymf57|P.sexaurelia-Sample_130	Ymf57|P.tetraurelia-Sample_291	0.118044	0.84553	0.139609	231	73.2919	157.708	50	32.9832	17.0168
Ymf57|P.sexaurelia-Sample_130	Ymf57|Sample_Peniche3I	0.229047	0.201496	1.13673	204	51.4887	152.511	38	8.83227	29.1677
Ymf57|P.caudatum-Sample_C104	Ymf57|P.biaurelia-Sample_379	0.198417	1.10489	0.17958	228	58.9896	169.01	59	29.904	29.096
Ymf57|P.caudatum-Sample_C104	Ymf57|P.octaurelia-Sample_1038	0.181406	0.809971	0.223965	231	48.3971	182.603	51	21.992	29.008
Ymf57|P.caudatum-Sample_C104	Ymf57|Sample_M13	0.122224	0.439924	0.277829	300	56.4417	243.558	45	17.8615	27.1385
Ymf57|P.caudatum-Sample_C104	Ymf57|P.multimicronucleatum-Sample_M04	0.141375	0.560206	0.252363	300	56.0114	243.989	52	21.0158	30.9842
Ymf57|P.caudatum-Sample_C104	Ymf57|Sample_C026	0.0242582	0.252903	0.0959192	300	89.4464	210.554	23	18	5
Ymf57|P.caudatum-Sample_C104	Ymf57|P.tetraurelia-Sample_291	0.178916	0.812284	0.220263	276	85.0957	190.904	67	36.9018	30.0982
Ymf57|P.caudatum-Sample_C104	Ymf57|Sample_Peniche3I	0.114722	0.86185	0.133111	300	48.2207	251.779	49	22.5214	26.4786
Ymf57|P.biaurelia-Sample_379	Ymf57|P.octaurelia-Sample_1038	0.10404	0.942895	0.110341	228	72.2841	155.716	47	31.9915	15.0085
Ymf57|P.biaurelia-Sample_379	Ymf57|Sample_M13	0.333567	0.437054	0.763217	195	41.2612	153.739	53	13.1386	39.8614
Ymf57|P.biaurelia-Sample_379	Ymf57|P.multimicronucleatum-Sample_M04	0.389544	0.300656	1.29565	198	51.6789	146.321	55	12.4694	42.5306
Ymf57|P.biaurelia-Sample_379	Ymf57|Sample_C026	0.189824	1.74453	0.108811	228	53.2455	174.754	65	36.0333	28.9667
Ymf57|P.biaurelia-Sample_379	Ymf57|P.tetraurelia-Sample_291	0.137569	0.84519	0.162767	228	83.4809	144.519	55	36.9934	18.0066
Ymf57|P.biaurelia-Sample_379	Ymf57|Sample_Peniche3I	0.220259	1.18892	0.18526	225	45.7386	179.261	61	27.275	33.725
Ymf57|P.octaurelia-Sample_1038	Ymf57|Sample_M13	0.250199	0.47221	0.529846	204	36.043	167.957	47	12.3091	34.6909
Ymf57|P.octaurelia-Sample_1038	Ymf57|P.multimicronucleatum-Sample_M04	0.251321	0.364732	0.689057	198	37.5923	160.408	44	10.67	33.33
Ymf57|P.octaurelia-Sample_1038	Ymf57|Sample_C026	0.180745	1.05628	0.171114	231	42.2564	188.744	51	21.0939	29.9061
Ymf57|P.octaurelia-Sample_1038	Ymf57|P.tetraurelia-Sample_291	0.0887691	0.568155	0.156241	231	79.3066	151.693	41	28.4026	12.5974
Ymf57|P.octaurelia-Sample_1038	Ymf57|Sample_Peniche3I	0.261863	0.271752	0.963611	204	37.4625	166.538	44	8.43737	35.5626
Ymf57|Sample_M13	Ymf57|P.multimicronucleatum-Sample_M04	0.030912	1.88151	0.0164294	300	34.2609	265.739	29	21	8
Ymf57|Sample_M13	Ymf57|Sample_C026	0.109516	0.573693	0.190896	300	52.9091	247.091	44	19.1081	24.8919
Ymf57|Sample_M13	Ymf57|P.tetraurelia-Sample_291	0.214341	1.24305	0.172431	279	71.9406	207.059	75	36.8779	38.1221
Ymf57|Sample_M13	Ymf57|Sample_Peniche3I	0.0120187	0.295006	0.0407406	300	47.8268	252.173	14	11	3
Ymf57|P.multimicronucleatum-Sample_M04	Ymf57|Sample_C026	0.129717	0.501687	0.258562	300	52.4176	247.582	47	17.9365	29.0635
Ymf57|P.multimicronucleatum-Sample_M04	Ymf57|P.tetraurelia-Sample_291	0.210503	1.18374	0.17783	279	68.7178	210.282	79	40.9048	38.0952
Ymf57|P.multimicronucleatum-Sample_M04	Ymf57|Sample_Peniche3I	0.0379591	0.400928	0.0946781	300	56.4021	243.598	26	17	9
Ymf57|Sample_C026	Ymf57|P.tetraurelia-Sample_291	0.181236	1.50262	0.120613	279	79.5644	199.436	74	42.1973	31.8027
Ymf57|Sample_C026	Ymf57|Sample_Peniche3I	0.102953	0.970779	0.106052	300	44.4455	255.555	45	20.6875	24.3125
Ymf57|P.tetraurelia-Sample_291	Ymf57|Sample_Peniche3I	0.193769	1.93405	0.100188	279	62.8328	216.167	80	43.5493	36.4507
#Average Ka: 0.160191130556
#Average Ks: 0.883217916667
#Average KaKs: 0.287487080556