#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh4|Sample_M13	nadh4|P.multimicronucleatum-Sample_M04	0.0518524	3.83908	0.0135064	1602	167.131	1434.87	199	127.298	71.7024
nadh4|Sample_M13	nadh4|P.tetraurelia-Sample_291	0.237394	4.42881	0.0536022	1590	366.899	1223.1	559	311.554	247.446
nadh4|Sample_M13	nadh4|P.biaurelia-Sample_379	0.153277	4.35534	0.035193	1539	332.659	1206.34	449	282.737	166.263
nadh4|Sample_M13	nadh4|P.caudatum-Sample_C104	0.13348	3.94758	0.0338132	1527	193.145	1333.85	320	157.872	162.128
nadh4|Sample_M13	nadh4|Sample_C026	0.137491	3.92444	0.0350344	1527	187.277	1339.72	319	151.655	167.345
nadh4|Sample_M13	nadh4|P.sexaurelia-Sample_130	0.158546	4.37828	0.0362119	1539	342.994	1196.01	469	298.947	170.053
nadh4|Sample_M13	nadh4|P.octaurelia-Sample_1038	0.150638	4.36753	0.0344905	1539	338.112	1200.89	444	280.925	163.075
nadh4|Sample_M13	nadh4|Sample_Peniche3I	0.00980317	0.83854	0.0116908	1533	197.59	1335.41	98	85	13
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.tetraurelia-Sample_291	0.231844	4.40353	0.0526496	1590	354.736	1235.26	557	312.055	244.945
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.biaurelia-Sample_379	0.140785	4.31384	0.0326356	1539	314.753	1224.25	439	282.647	156.353
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.caudatum-Sample_C104	0.13556	3.85958	0.035123	1527	171.76	1355.24	325	158.027	166.973
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_C026	0.135009	3.84644	0.0350999	1527	168.778	1358.22	317	150.163	166.837
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.sexaurelia-Sample_130	0.144546	4.32706	0.0334051	1539	320.349	1218.65	440	280.462	159.538
nadh4|P.multimicronucleatum-Sample_M04	nadh4|P.octaurelia-Sample_1038	0.140827	4.3277	0.0325408	1539	320.625	1218.38	440	284.318	155.682
nadh4|P.multimicronucleatum-Sample_M04	nadh4|Sample_Peniche3I	0.0371633	3.80343	0.00977099	1533	159.372	1373.63	180	130.292	49.708
nadh4|P.tetraurelia-Sample_291	nadh4|P.biaurelia-Sample_379	0.156007	1.51338	0.103085	1545	458.739	1086.26	412	259.896	152.104
nadh4|P.tetraurelia-Sample_291	nadh4|P.caudatum-Sample_C104	0.21435	4.44112	0.0482648	1533	372.969	1160.03	515	300.042	214.958
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_C026	0.210082	4.42224	0.0475058	1533	363.695	1169.3	510	296.931	213.069
nadh4|P.tetraurelia-Sample_291	nadh4|P.sexaurelia-Sample_130	0.156321	1.52394	0.102577	1545	441.863	1103.14	443	287.956	155.044
nadh4|P.tetraurelia-Sample_291	nadh4|P.octaurelia-Sample_1038	0.138071	1.18214	0.116798	1545	458.608	1086.39	372	235.748	136.252
nadh4|P.tetraurelia-Sample_291	nadh4|Sample_Peniche3I	0.221346	4.40124	0.0502917	1527	353.656	1173.34	524	300.295	223.705
nadh4|P.biaurelia-Sample_379	nadh4|P.caudatum-Sample_C104	0.123565	4.33913	0.0284768	1533	325.548	1207.45	413	276.068	136.932
nadh4|P.biaurelia-Sample_379	nadh4|Sample_C026	0.120957	4.29687	0.0281501	1533	307.709	1225.29	421	284.712	136.288
nadh4|P.biaurelia-Sample_379	nadh4|P.sexaurelia-Sample_130	0.0651621	1.36939	0.0475847	1545	445.855	1099.14	349	280.528	68.4722
nadh4|P.biaurelia-Sample_379	nadh4|P.octaurelia-Sample_1038	0.044785	1.084	0.0413147	1545	474.974	1070.03	289	242.594	46.4062
nadh4|P.biaurelia-Sample_379	nadh4|Sample_Peniche3I	0.151386	4.37828	0.0345767	1527	342.994	1184.01	436	274.669	161.331
nadh4|P.caudatum-Sample_C104	nadh4|Sample_C026	0.0101503	1.48119	0.0068528	1533	230.119	1302.88	145	131.884	13.1164
nadh4|P.caudatum-Sample_C104	nadh4|P.sexaurelia-Sample_130	0.113143	4.30505	0.0262815	1533	311.085	1221.92	415	287.207	127.793
nadh4|P.caudatum-Sample_C104	nadh4|P.octaurelia-Sample_1038	0.116561	4.36138	0.0267258	1533	335.348	1197.65	417	288.293	128.707
nadh4|P.caudatum-Sample_C104	nadh4|Sample_Peniche3I	0.13424	3.90692	0.0343595	1527	182.952	1344.05	321	156.857	164.143
nadh4|Sample_C026	nadh4|P.sexaurelia-Sample_130	0.106746	4.2439	0.0251529	1533	286.727	1246.27	397	273.506	123.494
nadh4|Sample_C026	nadh4|P.octaurelia-Sample_1038	0.113892	4.33268	0.0262868	1533	322.758	1210.24	418	290.641	127.359
nadh4|Sample_C026	nadh4|Sample_Peniche3I	0.136413	3.89281	0.0350423	1527	179.543	1347.46	313	145.908	167.092
nadh4|P.sexaurelia-Sample_130	nadh4|P.octaurelia-Sample_1038	0.0646519	1.59777	0.0404638	1545	448.151	1096.85	364	296.185	67.8151
nadh4|P.sexaurelia-Sample_130	nadh4|Sample_Peniche3I	0.160551	4.36455	0.0367852	1527	336.769	1190.23	451	279.933	171.067
nadh4|P.octaurelia-Sample_1038	nadh4|Sample_Peniche3I	0.142301	4.34231	0.0327708	1527	326.931	1200.07	424	269.254	154.746
#Average Ks: 3.57615194444
#Average Ka: 0.130524921389
#Average KaKs: 0.0395587247222