#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.caudatum-Sample_C104	0.430222	0.102135	4.2123	885	200.083	684.917	239	18.723	220.277
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.multimicronucleatum-Sample_M04	0.45198	0.114269	3.95538	894	230.12	663.88	243	23.9281	219.072
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.sexaurelia-Sample_130	0.344514	0.106191	3.24428	951	225.682	725.318	217	22.0095	194.991
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.biaurelia-Sample_379	0.322369	0.105217	3.06383	930	225.06	704.94	202	21.7494	180.251
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_Peniche3I	0.500153	0.105414	4.74467	909	233.433	675.567	261	22.6622	238.338
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_M13	0.471958	0.119265	3.95721	933	225.108	707.892	267	24.4654	242.535
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|Sample_C026	0.502754	0.115958	4.33567	915	229.243	685.757	268	24.2278	243.772
nadh1_a|P.octaurelia-Sample_1038	nadh1_a|P.tetraurelia-Sample_291	0.311121	0.0823754	3.77687	954	234.844	719.156	197	18.0322	178.968
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.multimicronucleatum-Sample_M04	0.315479	0.0661249	4.77096	873	252.279	620.721	173	15.7756	157.224
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.sexaurelia-Sample_130	0.469074	0.0828127	5.66428	885	230.707	654.293	239	17.7871	221.213
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.biaurelia-Sample_379	0.48714	0.104646	4.65512	891	219.841	671.159	255	21.0151	233.985
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_Peniche3I	0.293296	0.081341	3.60575	879	249.089	629.911	169	18.9388	150.061
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_M13	0.286853	0.0836071	3.43097	882	243.499	638.501	169	18.948	150.052
nadh1_a|P.caudatum-Sample_C104	nadh1_a|Sample_C026	0.183232	0.0237207	7.72453	879	262.815	616.185	105	6.10702	98.893
nadh1_a|P.caudatum-Sample_C104	nadh1_a|P.tetraurelia-Sample_291	0.49223	0.107215	4.59105	888	220.701	667.299	255	21.6319	233.368
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.sexaurelia-Sample_130	0.463964	0.0817855	5.67294	897	235.958	661.042	240	18.0719	221.928
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.biaurelia-Sample_379	0.488219	0.0833359	5.85844	900	223.212	676.788	253	17.2243	235.776
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_Peniche3I	0.175528	0.0178472	9.83502	906	227.983	678.017	109	4.00902	104.991
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_M13	0.184225	0.0175501	10.4971	912	232.071	679.929	114	4.00085	109.999
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|Sample_C026	0.298121	0.0522658	5.70395	867	253.209	613.791	161	12.6073	148.393
nadh1_a|P.multimicronucleatum-Sample_M04	nadh1_a|P.tetraurelia-Sample_291	0.476051	0.117065	4.06655	888	224.284	663.716	251	23.866	227.134
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|P.biaurelia-Sample_379	0.323815	0.0887666	3.64794	930	211.391	718.609	203	17.4542	185.546
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_Peniche3I	0.432951	0.0851229	5.08619	912	229.58	682.42	237	18.3067	218.693
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_M13	0.432742	0.118812	3.64225	930	230.425	699.575	250	24.9684	225.032
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|Sample_C026	0.420861	0.107807	3.90385	903	225.08	677.92	235	22.2627	212.737
nadh1_a|P.sexaurelia-Sample_130	nadh1_a|P.tetraurelia-Sample_291	0.378603	0.139634	2.71139	942	223.044	718.956	236	27.8778	208.122
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_Peniche3I	0.472873	0.101341	4.66618	906	226.115	679.885	252	20.9402	231.06
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_M13	0.499057	0.095356	5.23361	909	228.955	680.045	261	20.0001	241
nadh1_a|P.biaurelia-Sample_379	nadh1_a|Sample_C026	0.431575	0.0952266	4.53209	885	213.37	671.63	234	18.7626	215.237
nadh1_a|P.biaurelia-Sample_379	nadh1_a|P.tetraurelia-Sample_291	0.345829	0.083865	4.12364	924	226.334	697.666	206	17.6706	188.329
nadh1_a|Sample_Peniche3I	nadh1_a|Sample_M13	0.106645	0.024272	4.39375	927	336.123	590.877	66	8.02776	57.9722
nadh1_a|Sample_Peniche3I	nadh1_a|Sample_C026	0.291033	0.0703192	4.13874	873	244.218	628.782	165	16.1009	148.899
nadh1_a|Sample_Peniche3I	nadh1_a|P.tetraurelia-Sample_291	0.504098	0.112162	4.49438	894	225.523	668.477	260	22.9903	237.01
nadh1_a|Sample_M13	nadh1_a|Sample_C026	0.335478	0.0756165	4.43657	891	269.819	621.181	184	19.0549	164.945
nadh1_a|Sample_M13	nadh1_a|P.tetraurelia-Sample_291	0.519074	0.114773	4.52262	918	229.194	688.806	274	23.9207	250.079
nadh1_a|Sample_C026	nadh1_a|P.tetraurelia-Sample_291	0.504464	0.121928	4.13738	915	228.969	686.031	269	25.2769	243.723
#Average Ks: 0.0890317527778
#Average Ka: 0.387432805556
#Average KaKs: 4.75104027778