#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cox1|P.tetraurelia-Sample_291	cox1|Sample_C026	0.433252	0.145024	2.98744	1971	636.188	1334.81	508	81.2101	426.79
cox1|P.tetraurelia-Sample_291	cox1|P.caudatum-Sample_C104	0.441542	0.136361	3.23804	1980	640.422	1339.58	513	77.5546	435.445
cox1|P.tetraurelia-Sample_291	cox1|P.biaurelia-Sample_379	0.31358	0.0711365	4.40815	2022	701.182	1320.82	373	46.9902	326.01
cox1|P.tetraurelia-Sample_291	cox1|P.multimicronucleatum-Sample_M04	0.443518	0.140506	3.15657	1944	613.953	1330.05	510	76.1241	433.876
cox1|P.tetraurelia-Sample_291	cox1|P.sexaurelia-Sample_130	0.367027	0.0723496	5.07296	2001	674.136	1326.86	418	45.9267	372.073
cox1|P.tetraurelia-Sample_291	cox1|Sample_M13	0.440658	0.125466	3.51217	1989	648.842	1340.16	507	72.6532	434.347
cox1|P.tetraurelia-Sample_291	cox1|Sample_Peniche3I	0.42481	0.101443	4.18767	1908	632.971	1275.03	458	58.5059	399.494
cox1|Sample_C026	cox1|P.caudatum-Sample_C104	0.0369698	1.79606	0.0205838	2265	330.679	1934.32	255	185.265	69.7351
cox1|Sample_C026	cox1|P.biaurelia-Sample_379	0.0591313	4.58211	0.0129048	2163	450.105	1712.9	510	412.697	97.3031
cox1|Sample_C026	cox1|P.multimicronucleatum-Sample_M04	0.0707059	4.14565	0.0170554	2229	251.523	1977.48	370	236.748	133.252
cox1|Sample_C026	cox1|P.sexaurelia-Sample_130	0.0606328	4.59212	0.0132037	2175	456.152	1718.85	523	422.967	100.033
cox1|Sample_C026	cox1|Sample_M13	0.0689615	4.17224	0.0165287	2229	260.599	1968.4	366	236.463	129.537
cox1|Sample_C026	cox1|Sample_Peniche3I	0.047945	4.1273	0.0116166	2124	245.443	1878.56	306	218.813	87.1875
cox1|P.caudatum-Sample_C104	cox1|P.biaurelia-Sample_379	0.0604303	4.58503	0.0131799	2163	451.859	1711.14	509	409.774	99.2262
cox1|P.caudatum-Sample_C104	cox1|P.multimicronucleatum-Sample_M04	0.0732956	4.16025	0.0176181	2226	256.467	1969.53	377	239.689	137.311
cox1|P.caudatum-Sample_C104	cox1|P.sexaurelia-Sample_130	0.0646055	4.59877	0.0140484	2175	460.214	1714.79	524	417.961	106.039
cox1|P.caudatum-Sample_C104	cox1|Sample_M13	0.0662583	4.17432	0.0158728	2226	261.325	1964.68	359	234.555	124.445
cox1|P.caudatum-Sample_C104	cox1|Sample_Peniche3I	0.0490927	4.14483	0.0118443	2124	251.249	1872.75	292	203.076	88.9241
cox1|P.biaurelia-Sample_379	cox1|P.multimicronucleatum-Sample_M04	0.391045	0.120776	3.23777	1923	608.413	1314.59	456	65.8299	390.17
cox1|P.biaurelia-Sample_379	cox1|P.sexaurelia-Sample_130	0.30987	0.071892	4.31021	1977	650.12	1326.88	370	43.9252	326.075
cox1|P.biaurelia-Sample_379	cox1|Sample_M13	0.386713	0.103429	3.7389	1959	647.807	1311.19	447	61.0425	385.958
cox1|P.biaurelia-Sample_379	cox1|Sample_Peniche3I	0.373362	0.0934215	3.99653	1911	633.498	1277.5	420	54.3477	365.652
cox1|P.multimicronucleatum-Sample_M04	cox1|P.sexaurelia-Sample_130	0.0674839	4.59766	0.0146779	2172	459.535	1712.46	530	419.64	110.36
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_M13	0.0280809	4.04995	0.00693365	2226	221.391	2004.61	228	172.785	55.2148
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_Peniche3I	0.0203402	2.4888	0.00817271	2124	212.574	1911.43	192	153.657	38.3429
cox1|P.sexaurelia-Sample_130	cox1|Sample_M13	0.403012	0.117499	3.42991	1959	613.317	1345.68	473	64.8116	408.188
cox1|P.sexaurelia-Sample_130	cox1|Sample_Peniche3I	0.385817	0.114219	3.37787	1908	596.878	1311.12	445	61.5073	383.493
cox1|Sample_M13	cox1|Sample_Peniche3I	0.00647517	0.762705	0.00848975	2124	225.616	1898.38	111	98.7614	12.2386
#Average Ks: 2.0854042
#Average Ka: 0.210521959643
#Average KaKs: 1.74489001821