#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cob|P.sexaurelia-Sample_130	cob|P.biaurelia-Sample_379	0.249982	0.0777426	3.21551	1254	361.007	892.993	211	26.2762	184.724
cob|P.sexaurelia-Sample_130	cob|P.tetraurelia-Sample_291	0.266448	0.0619005	4.30445	1251	363.123	887.877	215	21.1712	193.829
cob|P.sexaurelia-Sample_130	cob|Sample_Peniche3I	0.554877	0.151474	3.66319	1239	351.31	887.69	376	46.9919	329.008
cob|P.sexaurelia-Sample_130	cob|P.multimicronucleatum-Sample_M04	0.557677	0.154189	3.61684	1245	354.85	890.15	379	48.1295	330.871
cob|P.sexaurelia-Sample_130	cob|Sample_C026	0.478723	0.111131	4.30773	1230	352.041	877.959	331	35.8899	295.11
cob|P.sexaurelia-Sample_130	cob|P.caudatum-Sample_C104	0.484695	0.0999235	4.85066	1239	357.014	881.986	331	32.8427	298.157
cob|P.sexaurelia-Sample_130	cob|P.octaurelia-Sample_1038	0.251222	0.0511744	4.90914	1251	350.841	900.159	205	17.1305	187.87
cob|P.sexaurelia-Sample_130	cob|Sample_M13	0.54692	0.153037	3.57378	1242	349.765	892.235	375	47.2344	327.766
cob|P.biaurelia-Sample_379	cob|P.tetraurelia-Sample_291	0.280128	0.0642833	4.35771	1266	379.725	886.275	223	23.0495	199.95
cob|P.biaurelia-Sample_379	cob|Sample_Peniche3I	0.49918	0.13464	3.70751	1242	346.895	895.105	353	41.8291	311.171
cob|P.biaurelia-Sample_379	cob|P.multimicronucleatum-Sample_M04	0.502854	0.169502	2.96666	1251	353.224	897.776	365	52.1886	312.811
cob|P.biaurelia-Sample_379	cob|Sample_C026	0.479538	0.112365	4.26767	1245	362.725	882.275	333	37.1792	295.821
cob|P.biaurelia-Sample_379	cob|P.caudatum-Sample_C104	0.464558	0.109923	4.22621	1248	360.887	887.113	327	36.2075	290.792
cob|P.biaurelia-Sample_379	cob|P.octaurelia-Sample_1038	0.271319	0.0697724	3.88863	1263	365.594	897.406	222	24.0557	197.944
cob|P.biaurelia-Sample_379	cob|Sample_M13	0.489063	0.164027	2.9816	1245	346.485	898.515	358	49.8517	308.148
cob|P.tetraurelia-Sample_291	cob|Sample_Peniche3I	0.581344	0.159711	3.63998	1233	352.633	880.367	384	49.3626	334.637
cob|P.tetraurelia-Sample_291	cob|P.multimicronucleatum-Sample_M04	0.582256	0.164422	3.54122	1242	360.664	881.336	387	51.9419	335.058
cob|P.tetraurelia-Sample_291	cob|Sample_C026	0.502526	0.111329	4.51389	1239	356.327	882.673	343	36.3053	306.695
cob|P.tetraurelia-Sample_291	cob|P.caudatum-Sample_C104	0.492112	0.102277	4.81157	1242	355.859	886.141	337	33.3488	303.651
cob|P.tetraurelia-Sample_291	cob|P.octaurelia-Sample_1038	0.228049	0.0659308	3.45891	1257	369.375	887.625	192	23	169
cob|P.tetraurelia-Sample_291	cob|Sample_M13	0.560963	0.159798	3.51045	1236	350.249	885.751	380	49.0698	330.93
cob|Sample_Peniche3I	cob|P.multimicronucleatum-Sample_M04	0.106444	0.0717338	1.48388	1188	268.32	919.68	109	18.061	90.939
cob|Sample_Peniche3I	cob|Sample_C026	0.192444	0.0978639	1.96645	1167	275.971	891.029	175	24.6049	150.395
cob|Sample_Peniche3I	cob|P.caudatum-Sample_C104	0.186411	0.0849754	2.1937	1158	269.583	888.417	167	21.1502	145.85
cob|Sample_Peniche3I	cob|P.octaurelia-Sample_1038	0.465549	0.173962	2.67615	1164	325.993	838.007	324	48.0685	275.931
cob|Sample_Peniche3I	cob|Sample_M13	0.0796161	0.0343761	2.31603	1194	390.484	803.516	73	13	60
cob|P.multimicronucleatum-Sample_M04	cob|Sample_C026	0.188069	0.101531	1.85234	1176	282.977	893.023	174	26.2951	147.705
cob|P.multimicronucleatum-Sample_M04	cob|P.caudatum-Sample_C104	0.185445	0.125053	1.48294	1167	286.167	880.833	176	32.1564	143.844
cob|P.multimicronucleatum-Sample_M04	cob|P.octaurelia-Sample_1038	0.496138	0.189437	2.61902	1176	339.007	836.993	342	53.8408	288.159
cob|P.multimicronucleatum-Sample_M04	cob|Sample_M13	0.105075	0.0633089	1.65972	1182	299.793	882.207	104	17.8943	86.1057
cob|Sample_C026	cob|P.caudatum-Sample_C104	0.097832	0.0253879	3.85349	1230	332.895	897.105	90	8.2644	81.7356
cob|Sample_C026	cob|P.octaurelia-Sample_1038	0.454463	0.129422	3.51147	1185	343.262	841.738	312	39.5742	272.426
cob|Sample_C026	cob|Sample_M13	0.195753	0.0851563	2.29875	1167	280.524	886.476	174	22.0694	151.931
cob|P.caudatum-Sample_C104	cob|P.octaurelia-Sample_1038	0.44335	0.145118	3.05509	1179	334.114	844.886	311	42.7225	268.277
cob|P.caudatum-Sample_C104	cob|Sample_M13	0.196377	0.0898954	2.18451	1158	280.446	877.554	174	23.2411	150.759
cob|P.octaurelia-Sample_1038	cob|Sample_M13	0.513149	0.123922	4.1409	1242	350.545	891.455	353	39.179	313.821
#Average Ks: 0.110824866667
#Average Ka: 0.367515252778
#Average KaKs: 3.3224375