#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf80|P.octaurelia-Sample_1038	Ymf80|P.caudatum-Sample_C104	0.166389	1.35428	0.122861	267	77.8663	189.134	70	42.1166	27.8834
Ymf80|P.octaurelia-Sample_1038	Ymf80|P.multimicronucleatum-Sample_M04	0.240172	1.65559	0.145068	267	75.9271	191.073	81	42.3148	38.6852
Ymf80|P.octaurelia-Sample_1038	Ymf80|Sample_C026	0.175517	1.19374	0.147031	267	84.9705	182.029	69	40.8492	28.1508
Ymf80|P.octaurelia-Sample_1038	Ymf80|P.tetraurelia-Sample_291	0.11289	0.461578	0.244575	267	111.143	155.857	51	35	16
Ymf80|P.octaurelia-Sample_1038	Ymf80|P.sexaurelia-Sample_130	0.106801	0.687479	0.155352	267	103.867	163.133	58	41.9243	16.0757
Ymf80|P.octaurelia-Sample_1038	Ymf80|Sample_Peniche3I	0.296096	0.677232	0.437214	267	94.4888	172.511	80	38.263	41.737
Ymf80|P.octaurelia-Sample_1038	Ymf80|P.biaurelia-Sample_379	0.0624806	0.662024	0.0943781	267	86.7719	180.228	45	34.3404	10.6596
Ymf80|P.caudatum-Sample_C104	Ymf80|P.multimicronucleatum-Sample_M04	0.213855	1.51504	0.141154	270	40.7365	229.263	68	25.8029	42.1971
Ymf80|P.caudatum-Sample_C104	Ymf80|Sample_C026	0.0240106	1.43241	0.0167624	270	38.2546	231.745	26	20.545	5.45495
Ymf80|P.caudatum-Sample_C104	Ymf80|P.tetraurelia-Sample_291	0.240447	1.21979	0.197122	267	77.3672	189.633	85	46.6153	38.3847
Ymf80|P.caudatum-Sample_C104	Ymf80|P.sexaurelia-Sample_130	0.12299	3.03683	0.0404995	267	57.3462	209.654	76	52.3693	23.6307
Ymf80|P.caudatum-Sample_C104	Ymf80|Sample_Peniche3I	0.228413	0.809802	0.282061	267	55.8487	211.151	68	26.7053	41.2947
Ymf80|P.caudatum-Sample_C104	Ymf80|P.biaurelia-Sample_379	0.227219	1.01531	0.223793	267	76.5321	190.468	74	37.1802	36.8198
Ymf80|P.multimicronucleatum-Sample_M04	Ymf80|Sample_C026	0.203001	0.942727	0.215334	270	46.5262	223.474	63	23.7106	39.2894
Ymf80|P.multimicronucleatum-Sample_M04	Ymf80|P.tetraurelia-Sample_291	0.288829	1.85727	0.155512	267	71.2523	195.748	95	48.9478	46.0522
Ymf80|P.multimicronucleatum-Sample_M04	Ymf80|P.sexaurelia-Sample_130	0.230647	1.50397	0.153359	267	72.6169	194.383	80	41.91	38.09
Ymf80|P.multimicronucleatum-Sample_M04	Ymf80|Sample_Peniche3I	0.0763161	1.63721	0.0466135	267	46.5839	220.416	45	29.0835	15.9165
Ymf80|P.multimicronucleatum-Sample_M04	Ymf80|P.biaurelia-Sample_379	0.262182	1.53929	0.170326	267	70.5351	196.465	89	46.1073	42.8927
Ymf80|Sample_C026	Ymf80|P.tetraurelia-Sample_291	0.254802	1.39661	0.182443	267	82.4671	184.533	83	43.8565	39.1435
Ymf80|Sample_C026	Ymf80|P.sexaurelia-Sample_130	0.105328	2.28993	0.0459961	267	67.928	199.072	68	48.541	19.459
Ymf80|Sample_C026	Ymf80|Sample_Peniche3I	0.208043	0.50491	0.41204	267	62.3141	204.686	59	22.0268	36.9732
Ymf80|Sample_C026	Ymf80|P.biaurelia-Sample_379	0.223573	1.32052	0.169307	267	82.3762	184.624	77	41.8346	35.1654
Ymf80|P.tetraurelia-Sample_291	Ymf80|P.sexaurelia-Sample_130	0.150115	1.74505	0.0860234	267	94.9642	172.036	77	53.9141	23.0859
Ymf80|P.tetraurelia-Sample_291	Ymf80|Sample_Peniche3I	0.246748	2.77584	0.0888912	267	82.1697	184.83	89	50.5195	38.4805
Ymf80|P.tetraurelia-Sample_291	Ymf80|P.biaurelia-Sample_379	0.107898	0.802062	0.134526	267	100.247	166.753	61	44.4548	16.5452
Ymf80|P.sexaurelia-Sample_130	Ymf80|Sample_Peniche3I	0.217982	1.34878	0.161614	267	75.0535	191.947	83	46.9703	36.0297
Ymf80|P.sexaurelia-Sample_130	Ymf80|P.biaurelia-Sample_379	0.160389	0.489134	0.327903	267	105.976	161.024	58	35.1397	22.8603
Ymf80|Sample_Peniche3I	Ymf80|P.biaurelia-Sample_379	0.265489	1.25862	0.210936	267	84.3274	182.673	86	45.5744	40.4256
#Average Ks: 1.32617957143
#Average Ka: 0.186379367857
#Average KaKs: 0.171739114286