#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_C026	0.403395	1.90519	0.211735	189	41.5317	147.468	74	28.6928	45.3072
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_Peniche3I	0.418439	1.90579	0.219562	180	40.9404	139.06	72	28.2862	43.7138
Ymf78|P.biaurelia-Sample_379	Ymf78|P.sexaurelia-Sample_130	0.0247781	0.927353	0.0267191	189	64.8386	124.161	32	28.9815	3.01847
Ymf78|P.biaurelia-Sample_379	Ymf78|P.multimicronucleatum-Sample_M04	0.493821	1.59748	0.309125	207	53.5164	153.484	85	30.408	54.592
Ymf78|P.biaurelia-Sample_379	Ymf78|P.octaurelia-Sample_1038	0.103127	0.627456	0.164357	207	76.8815	130.118	41	28.643	12.357
Ymf78|P.biaurelia-Sample_379	Ymf78|P.tetraurelia-Sample_291	0.126813	1.11502	0.113731	207	66.5215	140.478	49	32.7303	16.2697
Ymf78|P.biaurelia-Sample_379	Ymf78|P.caudatum-Sample_C104	0.500833	1.30715	0.383149	201	52.8542	148.146	86	32.7028	53.2972
Ymf78|P.biaurelia-Sample_379	Ymf78|Sample_M13	0.383808	1.32068	0.290614	207	51.5047	155.495	78	31.9887	46.0113
Ymf78|Sample_C026	Ymf78|Sample_Peniche3I	0.365191	1.74733	0.208999	183	20.0016	162.998	60	13.5413	46.4587
Ymf78|Sample_C026	Ymf78|P.sexaurelia-Sample_130	0.486901	1.46353	0.332689	195	48.472	146.528	83	31.1889	51.8111
Ymf78|Sample_C026	Ymf78|P.multimicronucleatum-Sample_M04	0.451206	1.23955	0.364009	195	34.631	160.369	73	19.4943	53.5057
Ymf78|Sample_C026	Ymf78|P.octaurelia-Sample_1038	0.511745	2.91783	0.175385	192	48.9327	143.067	89	36.8374	52.1626
Ymf78|Sample_C026	Ymf78|P.tetraurelia-Sample_291	0.53778	1.34971	0.39844	192	46.727	145.273	84	29.2501	54.7499
Ymf78|Sample_C026	Ymf78|P.caudatum-Sample_C104	0.044969	0.617175	0.0728626	207	44.196	162.804	24	16.9648	7.03524
Ymf78|Sample_C026	Ymf78|Sample_M13	0.416013	1.18782	0.350232	192	27.7494	164.251	66	14.3844	51.6156
Ymf78|Sample_Peniche3I	Ymf78|P.sexaurelia-Sample_130	0.465826	1.92949	0.241424	183	44.5985	138.402	78	30.8956	47.1044
Ymf78|Sample_Peniche3I	Ymf78|P.multimicronucleatum-Sample_M04	0.256433	0.60597	0.423179	183	30.9174	152.083	44	11.2275	32.7725
Ymf78|Sample_Peniche3I	Ymf78|P.octaurelia-Sample_1038	0.447116	2.78539	0.160522	180	41.0115	138.989	82	36.2763	45.7237
Ymf78|Sample_Peniche3I	Ymf78|P.tetraurelia-Sample_291	0.44846	2.6645	0.168309	180	34.9062	145.094	80	32.1373	47.8627
Ymf78|Sample_Peniche3I	Ymf78|P.caudatum-Sample_C104	0.408118	1.70386	0.239526	183	22.3976	160.602	63	13.202	49.798
Ymf78|Sample_Peniche3I	Ymf78|Sample_M13	0.141649	0.475144	0.298119	183	29.4821	153.518	29	9.33154	19.6685
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.multimicronucleatum-Sample_M04	0.571404	1.91322	0.298661	195	54.7063	140.294	87	31.6833	55.3167
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.octaurelia-Sample_1038	0.084274	0.910514	0.0925565	192	65.2356	126.764	39	29	10
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.tetraurelia-Sample_291	0.0892446	1.06137	0.0840841	192	57.9775	134.023	40	28.7764	11.2236
Ymf78|P.sexaurelia-Sample_130	Ymf78|P.caudatum-Sample_C104	0.581216	0.992676	0.585505	195	55.1974	139.803	86	30.3786	55.6214
Ymf78|P.sexaurelia-Sample_130	Ymf78|Sample_M13	0.367443	2.57991	0.142425	192	43.1684	148.832	74	31.338	42.662
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.octaurelia-Sample_1038	0.60684	1.15763	0.524208	210	61.3404	148.66	97	36.1772	60.8228
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.tetraurelia-Sample_291	0.597184	1.79127	0.333387	213	50.2862	162.714	100	34.2532	65.7468
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|P.caudatum-Sample_C104	0.446844	1.35023	0.330939	207	31.9638	175.036	77	19.1463	57.8537
Ymf78|P.multimicronucleatum-Sample_M04	Ymf78|Sample_M13	0.231285	0.65376	0.353777	210	35.4307	174.569	48	13.6121	34.3879
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.tetraurelia-Sample_291	0.086413	0.661902	0.130553	210	59.7543	150.246	36	23.775	12.225
Ymf78|P.octaurelia-Sample_1038	Ymf78|P.caudatum-Sample_C104	0.612818	1.27471	0.480752	204	55.532	148.468	95	34.0374	60.9626
Ymf78|P.octaurelia-Sample_1038	Ymf78|Sample_M13	0.448751	1.84532	0.243184	207	51.4977	155.502	87	35.3249	51.6751
Ymf78|P.tetraurelia-Sample_291	Ymf78|P.caudatum-Sample_C104	0.635724	1.30941	0.485503	204	53.0264	150.974	96	32.8303	63.1697
Ymf78|P.tetraurelia-Sample_291	Ymf78|Sample_M13	0.435101	2.81042	0.154817	207	42.4032	164.597	86	32.6438	53.3562
Ymf78|P.caudatum-Sample_C104	Ymf78|Sample_M13	0.442603	0.458085	0.966202	204	30.7858	173.214	67	9.80383	57.1962
#Average Ks: 1.44899569444
#Average Ka: 0.379821269444
#Average KaKs: 0.287756702778