#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_C026	1.12343	0.65525	1.71451	1332	345.441	986.559	700	139.723	560.277
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.multimicronucleatum-Sample_M04	1.08145	0.731343	1.47871	1080	273.426	806.574	565	115.679	449.321
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_M13	1.05203	1.07066	0.982598	1227	296.515	930.485	663	148.767	514.233
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.tetraurelia-Sample_291	0.263035	0.185942	1.41461	1527	461.318	1065.68	307	74.4532	232.547
Ymf63|P.octaurelia-Sample_1038	Ymf63|Sample_Peniche3I	1.09213	0.80538	1.35604	1218	310.058	907.942	648	138.806	509.194
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.sexaurelia-Sample_130	0.405498	0.32251	1.25732	1506	430.456	1075.54	444	110.967	333.033
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.biaurelia-Sample_379	0.31909	0.251678	1.26785	1503	446.125	1056.88	365	93.7802	271.22
Ymf63|P.octaurelia-Sample_1038	Ymf63|P.caudatum-Sample_C104	1.09236	0.723531	1.50976	1344	369.067	974.933	698	155.625	542.375
Ymf63|Sample_C026	Ymf63|P.multimicronucleatum-Sample_M04	0.665934	0.441538	1.50821	1017	181.895	835.105	415	58.2836	356.716
Ymf63|Sample_C026	Ymf63|Sample_M13	0.794103	0.465294	1.70667	1182	229.647	952.353	529	76.4497	452.55
Ymf63|Sample_C026	Ymf63|P.tetraurelia-Sample_291	1.1535	0.690892	1.66958	1329	346.441	982.559	710	144.658	565.342
Ymf63|Sample_C026	Ymf63|Sample_Peniche3I	0.830351	0.440111	1.88669	1230	263.598	966.402	557	84.3062	472.694
Ymf63|Sample_C026	Ymf63|P.sexaurelia-Sample_130	0.998046	0.599437	1.66497	1314	331.002	982.998	661	128.619	532.381
Ymf63|Sample_C026	Ymf63|P.biaurelia-Sample_379	1.09885	0.731716	1.50174	1311	336.145	974.855	694	145.467	548.533
Ymf63|Sample_C026	Ymf63|P.caudatum-Sample_C104	0.37962	0.338691	1.12084	1575	286.109	1288.89	455	75.7015	379.299
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|Sample_M13	0.422748	0.338422	1.24917	1020	217.162	802.838	311	56.8361	254.164
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.tetraurelia-Sample_291	1.28006	0.815041	1.57055	1089	284.506	804.494	606	125.963	480.037
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|Sample_Peniche3I	0.382034	0.369463	1.03402	1029	204.093	824.907	299	56.9549	242.045
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.sexaurelia-Sample_130	1.03549	0.679953	1.52289	1077	275.831	801.169	550	111.21	438.79
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.biaurelia-Sample_379	1.19888	0.781812	1.53346	1065	271.141	793.859	581	119.178	461.822
Ymf63|P.multimicronucleatum-Sample_M04	Ymf63|P.caudatum-Sample_C104	0.609999	0.538138	1.13353	1023	195.899	827.101	405	70.3827	334.617
Ymf63|Sample_M13	Ymf63|P.tetraurelia-Sample_291	1.28932	0.959901	1.34318	1233	320.872	912.128	700	154.463	545.537
Ymf63|Sample_M13	Ymf63|Sample_Peniche3I	0.226982	0.160389	1.4152	1233	280.014	952.986	224	39.4114	184.589
Ymf63|Sample_M13	Ymf63|P.sexaurelia-Sample_130	0.90791	1.16144	0.781707	1227	298.879	928.121	631	151.159	479.841
Ymf63|Sample_M13	Ymf63|P.biaurelia-Sample_379	1.13661	0.924134	1.22992	1218	312.755	905.245	667	150.052	516.948
Ymf63|Sample_M13	Ymf63|P.caudatum-Sample_C104	0.749659	0.530141	1.41407	1221	249.308	971.692	537	89.0291	447.971
Ymf63|P.tetraurelia-Sample_291	Ymf63|Sample_Peniche3I	1.10326	1.02081	1.08077	1224	310.882	913.118	669	154.546	514.454
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.sexaurelia-Sample_130	0.405036	0.285465	1.41887	1509	435.74	1073.26	433	101.166	331.834
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.biaurelia-Sample_379	0.363835	0.271347	1.34085	1503	447.582	1055.42	400	100.375	299.625
Ymf63|P.tetraurelia-Sample_291	Ymf63|P.caudatum-Sample_C104	1.10606	0.782377	1.41372	1356	363.957	992.043	720	161.326	558.674
Ymf63|Sample_Peniche3I	Ymf63|P.sexaurelia-Sample_130	0.871281	1.01988	0.854294	1209	297.306	911.694	609	146.66	462.34
Ymf63|Sample_Peniche3I	Ymf63|P.biaurelia-Sample_379	1.1492	0.816836	1.4069	1203	317.976	885.024	650	145.325	504.675
Ymf63|Sample_Peniche3I	Ymf63|P.caudatum-Sample_C104	0.720877	0.49398	1.45933	1227	270.327	956.673	523	91.644	431.356
Ymf63|P.sexaurelia-Sample_130	Ymf63|P.biaurelia-Sample_379	0.416834	0.340807	1.22308	1482	435.571	1046.43	446	116.715	329.285
Ymf63|P.sexaurelia-Sample_130	Ymf63|P.caudatum-Sample_C104	1.18865	0.584741	2.03279	1344	369.139	974.861	706	140.587	565.413
Ymf63|P.biaurelia-Sample_379	Ymf63|P.caudatum-Sample_C104	1.11327	0.697265	1.59663	1329	366.112	962.888	691	152.97	538.03
#Average Ks: 0.611842083333
#Average Ka: 0.834095055556
#Average KaKs: 1.39152858333