#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cox2|P.sexaurelia-Sample_130	cox2|Sample_Peniche3I	0.111223	NA	NA	1650	332.707	1317.29	454	317.833	136.167
cox2|P.sexaurelia-Sample_130	cox2|Sample_M13	0.103038	NA	NA	1731	349.521	1381.48	456	323	133
cox2|P.sexaurelia-Sample_130	cox2|P.biaurelia-Sample_379	0.0409014	2.04712	0.01998	1701	352.799	1348.2	301	247.333	53.6667
cox2|P.sexaurelia-Sample_130	cox2|P.octaurelia-Sample_1038	0.0458866	NA	NA	1770	369.598	1400.4	349	286.667	62.3333
cox2|P.sexaurelia-Sample_130	cox2|P.caudatum-Sample_C104	0.342293	0.14436	2.37111	1554	307.146	1246.85	383	40.3333	342.667
cox2|P.sexaurelia-Sample_130	cox2|P.multimicronucleatum-Sample_M04	0.109784	NA	NA	1743	352.573	1390.43	478	336	142
cox2|P.sexaurelia-Sample_130	cox2|Sample_C026	0.0943012	NA	NA	1701	343.044	1357.96	430	309.667	120.333
cox2|P.sexaurelia-Sample_130	cox2|P.tetraurelia-Sample_291	0.226529	0.064358	3.51982	1587	360.768	1226.23	262	22.25	239.75
cox2|Sample_Peniche3I	cox2|Sample_M13	0.00796085	0.279023	0.0285311	1650	324.034	1325.97	86	75.5	10.5
cox2|Sample_Peniche3I	cox2|P.biaurelia-Sample_379	0.124611	NA	NA	1650	333.325	1316.68	472	320.833	151.167
cox2|Sample_Peniche3I	cox2|P.octaurelia-Sample_1038	0.392172	0.235394	1.66603	1473	327.504	1145.5	416	66.1667	349.833
cox2|Sample_Peniche3I	cox2|P.caudatum-Sample_C104	0.156472	0.400543	0.390651	1542	279.269	1262.73	265	86.6667	178.333
cox2|Sample_Peniche3I	cox2|P.multimicronucleatum-Sample_M04	0.0304627	0.460006	0.0662225	1650	324.031	1325.97	151	111.417	39.5833
cox2|Sample_Peniche3I	cox2|Sample_C026	0.155512	0.358779	0.433449	1542	279.379	1262.62	257	79.6667	177.333
cox2|Sample_Peniche3I	cox2|P.tetraurelia-Sample_291	0.40282	0.211557	1.90407	1476	330.01	1145.99	418	60.8333	357.167
cox2|Sample_M13	cox2|P.biaurelia-Sample_379	0.11744	NA	NA	1701	344.14	1356.86	471	323.5	147.5
cox2|Sample_M13	cox2|P.octaurelia-Sample_1038	0.111582	NA	NA	1737	351.303	1385.7	487	343.333	143.667
cox2|Sample_M13	cox2|P.caudatum-Sample_C104	0.140473	0.375461	0.374135	1635	296.227	1338.77	259	87.5	171.5
cox2|Sample_M13	cox2|P.multimicronucleatum-Sample_M04	0.0271618	0.42671	0.063654	1731	340.853	1390.15	148	110.917	37.0833
cox2|Sample_M13	cox2|Sample_C026	0.142965	0.333582	0.428577	1590	287.811	1302.19	247	77.5	169.5
cox2|Sample_M13	cox2|P.tetraurelia-Sample_291	0.227467	1.22088	0.186315	1635	325.185	1309.82	453	196	257
cox2|P.biaurelia-Sample_379	cox2|P.octaurelia-Sample_1038	0.031446	3.04629	0.0103227	1701	353.419	1347.58	302	260.5	41.5
cox2|P.biaurelia-Sample_379	cox2|P.caudatum-Sample_C104	0.102647	NA	NA	1701	344.142	1356.86	446	315.833	130.167
cox2|P.biaurelia-Sample_379	cox2|P.multimicronucleatum-Sample_M04	0.122774	NA	NA	1701	344.142	1356.86	482	328.333	153.667
cox2|P.biaurelia-Sample_379	cox2|Sample_C026	0.0989697	NA	NA	1701	343.834	1357.17	450	324.167	125.833
cox2|P.biaurelia-Sample_379	cox2|P.tetraurelia-Sample_291	0.0406605	2.35857	0.0172395	1701	353.448	1347.55	307	253.667	53.3333
cox2|P.octaurelia-Sample_1038	cox2|P.caudatum-Sample_C104	0.104072	NA	NA	1752	354.168	1397.83	457	321.167	135.833
cox2|P.octaurelia-Sample_1038	cox2|P.multimicronucleatum-Sample_M04	0.122157	NA	NA	1740	351.7	1388.3	490	333.5	156.5
cox2|P.octaurelia-Sample_1038	cox2|Sample_C026	0.10092	NA	NA	1701	343.662	1357.34	455	326.833	128.167
cox2|P.octaurelia-Sample_1038	cox2|P.tetraurelia-Sample_291	0.0357984	1.08401	0.0330241	1776	369.53	1406.47	261	211.833	49.1667
cox2|P.caudatum-Sample_C104	cox2|P.multimicronucleatum-Sample_M04	0.152673	0.289094	0.528108	1629	294.572	1334.43	255	70.6667	184.333
cox2|P.caudatum-Sample_C104	cox2|Sample_C026	0.0118014	0.553784	0.0213105	1701	334.539	1366.46	147	131	16
cox2|P.caudatum-Sample_C104	cox2|P.tetraurelia-Sample_291	0.103096	NA	NA	1749	353.532	1395.47	457	322.583	134.417
cox2|P.multimicronucleatum-Sample_M04	cox2|Sample_C026	0.149381	0.283654	0.526631	1581	286.501	1294.5	243	67.6667	175.333
cox2|P.multimicronucleatum-Sample_M04	cox2|P.tetraurelia-Sample_291	0.114062	NA	NA	1737	351.68	1385.32	487	340.417	146.583
cox2|Sample_C026	cox2|P.tetraurelia-Sample_291	0.100853	NA	NA	1701	343.695	1357.3	467	338.917	128.083
#Average Ka: 0.142892107895
#Average Ks: 0.745956578947
#Average KaKs: 0.662588442105