#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cox1|P.tetraurelia-Sample_291	cox1|Sample_C026	0.327005	0.217581	1.50291	1995	456.239	1538.76	494	86.1667	407.833
cox1|P.tetraurelia-Sample_291	cox1|P.caudatum-Sample_C104	0.0955074	NA	NA	2211	486.28	1724.72	565	410.333	154.667
cox1|P.tetraurelia-Sample_291	cox1|P.biaurelia-Sample_379	0.0372902	1.98414	0.0187941	2172	490.594	1681.41	403	341.833	61.1667
cox1|P.tetraurelia-Sample_291	cox1|P.multimicronucleatum-Sample_M04	0.348339	0.210259	1.65671	1965	435.85	1529.15	506	79.9167	426.083
cox1|P.tetraurelia-Sample_291	cox1|P.sexaurelia-Sample_130	0.302149	0.0900039	3.35706	2028	459.834	1568.17	429	39	390
cox1|P.tetraurelia-Sample_291	cox1|Sample_M13	0.33189	0.182652	1.81706	1986	439.512	1546.49	486	71.25	414.75
cox1|P.tetraurelia-Sample_291	cox1|Sample_Peniche3I	0.0731957	NA	NA	2124	465.397	1658.6	513	397.333	115.667
cox1|Sample_C026	cox1|P.caudatum-Sample_C104	0.0470966	0.501814	0.0938526	2271	481.96	1789.04	258	176.333	81.6667
cox1|Sample_C026	cox1|P.biaurelia-Sample_379	0.30837	0.161477	1.90968	1938	446.274	1491.73	442	64.8333	377.167
cox1|Sample_C026	cox1|P.multimicronucleatum-Sample_M04	0.0873038	0.70719	0.123452	2238	475.558	1762.44	363	217.75	145.25
cox1|Sample_C026	cox1|P.sexaurelia-Sample_130	0.298485	0.182027	1.63978	1947	442.391	1504.61	442	71.5	370.5
cox1|Sample_C026	cox1|Sample_M13	0.157086	0.124229	1.26449	1974	395.247	1578.75	269	45.25	223.75
cox1|Sample_C026	cox1|Sample_Peniche3I	0.146191	0.107462	1.3604	1869	374.557	1494.44	236	37.5	198.5
cox1|P.caudatum-Sample_C104	cox1|P.biaurelia-Sample_379	0.0765203	NA	NA	2175	475.025	1699.97	508	384.333	123.667
cox1|P.caudatum-Sample_C104	cox1|P.multimicronucleatum-Sample_M04	0.0788404	0.721915	0.10921	2208	467.574	1740.43	347	216.75	130.25
cox1|P.caudatum-Sample_C104	cox1|P.sexaurelia-Sample_130	0.296106	0.211813	1.39796	1956	441.209	1514.79	452	81.4167	370.583
cox1|P.caudatum-Sample_C104	cox1|Sample_M13	0.164767	0.123041	1.33913	1971	393.615	1577.38	278	44.6667	233.333
cox1|P.caudatum-Sample_C104	cox1|Sample_Peniche3I	0.0643317	0.596663	0.107819	2118	449.979	1668.02	288	185.167	102.833
cox1|P.biaurelia-Sample_379	cox1|P.multimicronucleatum-Sample_M04	0.303923	0.187918	1.61732	1920	427.634	1492.37	444	71.0833	372.917
cox1|P.biaurelia-Sample_379	cox1|P.sexaurelia-Sample_130	0.285542	0.0637114	4.4818	2004	452.955	1551.04	396	27.6667	368.333
cox1|P.biaurelia-Sample_379	cox1|Sample_M13	0.308577	0.163326	1.88933	1974	436.637	1537.36	453	64.0833	388.917
cox1|P.biaurelia-Sample_379	cox1|Sample_Peniche3I	0.0670599	NA	NA	2127	464.212	1662.79	472	365.333	106.667
cox1|P.multimicronucleatum-Sample_M04	cox1|P.sexaurelia-Sample_130	0.0843735	NA	NA	2172	470.886	1701.11	523	387.25	135.75
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_M13	0.0400243	0.453217	0.0883116	2238	474.052	1763.95	230	161.25	68.75
cox1|P.multimicronucleatum-Sample_M04	cox1|Sample_Peniche3I	0.0270155	0.41178	0.0656066	2121	450.234	1670.77	187	142.667	44.3333
cox1|P.sexaurelia-Sample_130	cox1|Sample_M13	0.322593	0.175557	1.83753	1962	429.646	1532.35	469	67.25	401.75
cox1|P.sexaurelia-Sample_130	cox1|Sample_Peniche3I	0.0713206	NA	NA	2127	463.627	1663.37	503	389.833	113.167
cox1|Sample_M13	cox1|Sample_Peniche3I	0.00539505	0.246111	0.0219212	2127	452.796	1674.2	104	95	9
#Average Ka: 0.194923661364
#Average Ks: 0.355631240909
#Average KaKs: 1.25909668636