#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
cob|P.sexaurelia-Sample_130	cob|P.biaurelia-Sample_379	0.0309875	1.94853	0.015903	1326	282.825	1043.17	228	196.333	31.6667
cob|P.sexaurelia-Sample_130	cob|P.tetraurelia-Sample_291	0.0378596	1.944	0.0194751	1326	283.203	1042.8	235	196.5	38.5
cob|P.sexaurelia-Sample_130	cob|Sample_Peniche3I	0.111427	NA	NA	1326	272.513	1053.49	396	286.917	109.083
cob|P.sexaurelia-Sample_130	cob|P.multimicronucleatum-Sample_M04	0.407372	0.28089	1.45029	1179	257.165	921.835	350	60.25	289.75
cob|P.sexaurelia-Sample_130	cob|Sample_C026	0.187982	1.49504	0.125737	1263	261.645	1001.36	336	169.5	166.5
cob|P.sexaurelia-Sample_130	cob|P.caudatum-Sample_C104	0.18454	1.53444	0.120265	1272	263.378	1008.62	337	172	165
cob|P.sexaurelia-Sample_130	cob|P.octaurelia-Sample_1038	0.0273495	1.91348	0.0142931	1326	283.435	1042.56	224	196	28
cob|P.sexaurelia-Sample_130	cob|Sample_M13	0.107966	NA	NA	1326	273.502	1052.5	393	287.167	105.833
cob|P.biaurelia-Sample_379	cob|P.tetraurelia-Sample_291	0.039103	1.84114	0.0212385	1326	284.912	1041.09	235	195.333	39.6667
cob|P.biaurelia-Sample_379	cob|Sample_Peniche3I	0.0994264	NA	NA	1317	272.624	1044.38	364	266.75	97.25
cob|P.biaurelia-Sample_379	cob|P.multimicronucleatum-Sample_M04	0.404272	0.260349	1.55281	1200	259.51	940.49	351	57.0833	293.917
cob|P.biaurelia-Sample_379	cob|Sample_C026	0.0741025	NA	NA	1326	274.875	1051.12	352	277.833	74.1667
cob|P.biaurelia-Sample_379	cob|P.caudatum-Sample_C104	0.0733278	NA	NA	1326	275.046	1050.95	347	273.583	73.4167
cob|P.biaurelia-Sample_379	cob|P.octaurelia-Sample_1038	0.0273952	2.38806	0.0114717	1326	285.143	1040.86	233	205	28
cob|P.biaurelia-Sample_379	cob|Sample_M13	0.0984902	NA	NA	1317	273.272	1043.73	369	272.667	96.3333
cob|P.tetraurelia-Sample_291	cob|Sample_Peniche3I	0.12148	NA	NA	1326	274.598	1051.4	412	294.083	117.917
cob|P.tetraurelia-Sample_291	cob|P.multimicronucleatum-Sample_M04	0.358667	0.522801	0.686048	1221	261.643	959.357	372	98.5	273.5
cob|P.tetraurelia-Sample_291	cob|Sample_C026	0.0792255	NA	NA	1326	275.253	1050.75	371	292	79
cob|P.tetraurelia-Sample_291	cob|P.caudatum-Sample_C104	0.0781819	NA	NA	1326	275.424	1050.58	365	287	78
cob|P.tetraurelia-Sample_291	cob|P.octaurelia-Sample_1038	0.0294017	1.33441	0.0220336	1326	285.521	1040.48	208	178	30
cob|P.tetraurelia-Sample_291	cob|Sample_M13	0.117417	NA	NA	1326	275.588	1050.41	406	291.833	114.167
cob|Sample_Peniche3I	cob|P.multimicronucleatum-Sample_M04	0.0257371	0.502614	0.0512065	1332	264.827	1067.17	124	97	27
cob|Sample_Peniche3I	cob|Sample_C026	0.0796137	0.758398	0.104976	1329	265.458	1063.54	207	126.667	80.3333
cob|Sample_Peniche3I	cob|P.caudatum-Sample_C104	0.0779637	0.728729	0.106986	1326	264.756	1061.24	202	123.417	78.5833
cob|Sample_Peniche3I	cob|P.octaurelia-Sample_1038	0.0983783	NA	NA	1326	274.834	1051.17	374	277.083	96.9167
cob|Sample_Peniche3I	cob|Sample_M13	0.00754217	0.329983	0.0228562	1332	265.956	1066.04	79	71	8
cob|P.multimicronucleatum-Sample_M04	cob|Sample_C026	0.0881155	0.649292	0.13571	1332	265.476	1066.52	204	115.333	88.6667
cob|P.multimicronucleatum-Sample_M04	cob|P.caudatum-Sample_C104	0.0883173	0.688968	0.128188	1329	264.774	1064.23	208	119.333	88.6667
cob|P.multimicronucleatum-Sample_M04	cob|P.octaurelia-Sample_1038	0.131539	NA	NA	1290	267.755	1022.24	364	240.667	123.333
cob|P.multimicronucleatum-Sample_M04	cob|Sample_M13	0.0247914	0.485435	0.0510704	1332	265.819	1066.18	121	95	26
cob|Sample_C026	cob|P.caudatum-Sample_C104	0.0110949	0.409774	0.0270756	1362	272.4	1089.6	98	86	12
cob|Sample_C026	cob|P.octaurelia-Sample_1038	0.0637989	NA	NA	1326	275.488	1050.51	344	279.75	64.25
cob|Sample_C026	cob|Sample_M13	0.0834786	0.734244	0.113693	1332	266.605	1065.39	209	124.833	84.1667
cob|P.caudatum-Sample_C104	cob|P.octaurelia-Sample_1038	0.0635506	NA	NA	1326	275.659	1050.34	346	282	64
cob|P.caudatum-Sample_C104	cob|Sample_M13	0.0766367	0.774261	0.0989804	1323	264.908	1058.09	205	127.917	77.0833
cob|P.octaurelia-Sample_1038	cob|Sample_M13	0.09676	NA	NA	1326	275.823	1050.18	373	277.667	95.3333
#Average Ka: 0.109439074762
#Average Ks: 1.02499228571
#Average KaKs: 0.23239557619