#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf84|Sample_Peniche3I	Ymf84|P.tetraurelia-Sample_291	0.636124	1.50843	0.421713	492	99.6717	392.328	233	64.75	168.25
Ymf84|Sample_Peniche3I	Ymf84|P.multimicronucleatum-Sample_M04	0.216679	0.407963	0.531125	564	101.696	462.304	119	32	87
Ymf84|Sample_Peniche3I	Ymf84|P.caudatum-Sample_C104	0.414593	0.474593	0.873575	429	71.3265	357.674	139	25.0833	113.917
Ymf84|Sample_Peniche3I	Ymf84|P.sexaurelia-Sample_130	0.716543	0.916435	0.781881	486	99.4013	386.599	231	52.5833	178.417
Ymf84|Sample_Peniche3I	Ymf84|P.biaurelia-Sample_379	0.734585	0.96524	0.761039	453	91.6335	361.367	219	49.75	169.25
Ymf84|Sample_Peniche3I	Ymf84|Sample_C026	0.348215	0.607408	0.57328	459	80.8681	378.132	139	33.6667	105.333
Ymf84|Sample_Peniche3I	Ymf84|Sample_M13	0.0459272	0.269394	0.170484	564	103.836	460.164	44	23.5	20.5
Ymf84|Sample_Peniche3I	Ymf84|P.octaurelia-Sample_1038	0.654404	0.729316	0.897285	420	88.4481	331.552	186	41.25	144.75
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.multimicronucleatum-Sample_M04	0.611749	NA	NA	501	95.7314	405.269	242	72.5	169.5
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.caudatum-Sample_C104	0.54891	2.20425	0.249023	471	89.2801	381.72	212	63.4167	148.583
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.sexaurelia-Sample_130	0.221025	NA	NA	555	118.818	436.182	175	91.5	83.5
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.biaurelia-Sample_379	0.183195	1.53939	0.119005	540	118.557	421.443	146	77.5	68.5
Ymf84|P.tetraurelia-Sample_291	Ymf84|Sample_C026	0.560012	2.21141	0.253237	483	93.1022	389.898	220	66.1667	153.833
Ymf84|P.tetraurelia-Sample_291	Ymf84|Sample_M13	0.647559	1.05143	0.615883	456	92.8538	363.146	210	52.5	157.5
Ymf84|P.tetraurelia-Sample_291	Ymf84|P.octaurelia-Sample_1038	0.119162	1.78965	0.0665842	555	122.366	432.634	131	83.3333	47.6667
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.caudatum-Sample_C104	0.353792	0.444116	0.79662	456	82.5502	373.45	133	27.6667	105.333
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.sexaurelia-Sample_130	0.62461	1.0554	0.591825	462	92.4	369.6	209	52.3333	156.667
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.biaurelia-Sample_379	0.699863	1.15532	0.605773	465	92.4852	372.515	224	54.5	169.5
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|Sample_C026	0.340472	0.32338	1.05285	471	81.8453	389.155	128	21.5	106.5
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|Sample_M13	0.214054	0.458882	0.466469	564	101.728	462.272	121	34.9167	86.0833
Ymf84|P.multimicronucleatum-Sample_M04	Ymf84|P.octaurelia-Sample_1038	0.639091	0.917284	0.696721	477	99.1968	377.803	215	52.5	162.5
Ymf84|P.caudatum-Sample_C104	Ymf84|P.sexaurelia-Sample_130	0.75577	0.614713	1.22947	465	95.9361	369.064	216	40.25	175.75
Ymf84|P.caudatum-Sample_C104	Ymf84|P.biaurelia-Sample_379	0.686184	0.892378	0.768938	465	96.1421	368.858	216	50.1667	165.833
Ymf84|P.caudatum-Sample_C104	Ymf84|Sample_C026	0.168789	0.705426	0.239272	555	91.8645	463.136	112	42	70
Ymf84|P.caudatum-Sample_C104	Ymf84|Sample_M13	0.370593	0.458583	0.808125	474	86.7157	387.284	143	29.75	113.25
Ymf84|P.caudatum-Sample_C104	Ymf84|P.octaurelia-Sample_1038	0.652218	0.924391	0.705565	468	95.2009	372.799	213	50.5833	162.417
Ymf84|P.sexaurelia-Sample_130	Ymf84|P.biaurelia-Sample_379	0.204939	0.808875	0.253363	534	114.833	419.167	132	56.8333	75.1667
Ymf84|P.sexaurelia-Sample_130	Ymf84|Sample_C026	0.644203	0.611183	1.05403	480	104.867	375.133	206	43.8333	162.167
Ymf84|P.sexaurelia-Sample_130	Ymf84|Sample_M13	0.628575	1.25253	0.501844	489	97.5931	391.407	226	59.4167	166.583
Ymf84|P.sexaurelia-Sample_130	Ymf84|P.octaurelia-Sample_1038	0.196059	1.35932	0.144233	534	116.191	417.809	145	72.9167	72.0833
Ymf84|P.biaurelia-Sample_379	Ymf84|Sample_C026	0.546357	1.27177	0.429605	441	93.0771	347.923	192	57	135
Ymf84|P.biaurelia-Sample_379	Ymf84|Sample_M13	0.58858	NA	NA	468	93.0506	374.949	223	70.0833	152.917
Ymf84|P.biaurelia-Sample_379	Ymf84|P.octaurelia-Sample_1038	0.188667	1.75005	0.107806	534	119.351	414.649	150	80.8333	69.1667
Ymf84|Sample_C026	Ymf84|Sample_M13	0.345448	0.484347	0.713223	420	71.6989	348.301	122	25.5833	96.4167
Ymf84|Sample_C026	Ymf84|P.octaurelia-Sample_1038	0.597594	1.10935	0.538687	465	98.4244	366.576	208	57	151
Ymf84|Sample_M13	Ymf84|P.octaurelia-Sample_1038	0.583726	1.44411	0.404211	468	98.5984	369.402	213	63.1667	149.833
#Average Ka: 0.46263370303
#Average Ks: 0.991403545455
#Average KaKs: 0.558264975758