#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf83|Sample_Peniche3I	Ymf83|Sample_C026	0.378442	0.430263	0.87956	432	86.5363	345.464	131	28.3333	102.667
Ymf83|Sample_Peniche3I	Ymf83|P.tetraurelia-Sample_291	0.362206	NA	NA	471	95.6345	375.365	194	86.1667	107.833
Ymf83|Sample_Peniche3I	Ymf83|P.octaurelia-Sample_1038	0.333277	NA	NA	459	91.6972	367.303	178	79.1667	98.8333
Ymf83|Sample_Peniche3I	Ymf83|P.multimicronucleatum-Sample_M04	0.0907029	0.456943	0.198499	501	94.2475	406.752	67	32.25	34.75
Ymf83|Sample_Peniche3I	Ymf83|P.sexaurelia-Sample_130	0.328464	NA	NA	486	97.8167	388.183	197	93.75	103.25
Ymf83|Sample_Peniche3I	Ymf83|P.biaurelia-Sample_379	0.333902	NA	NA	486	101.307	384.693	216	112.333	103.667
Ymf83|Sample_Peniche3I	Ymf83|P.caudatum-Sample_C104	0.309411	0.962916	0.321328	462	89.5907	372.409	143	48.5833	94.4167
Ymf83|Sample_C026	Ymf83|P.tetraurelia-Sample_291	0.37017	NA	NA	546	115.875	430.125	229	103.333	125.667
Ymf83|Sample_C026	Ymf83|P.octaurelia-Sample_1038	0.347215	NA	NA	534	113.635	420.365	219	102.167	116.833
Ymf83|Sample_C026	Ymf83|P.multimicronucleatum-Sample_M04	0.320872	0.930997	0.344654	480	94.3897	385.61	151	50.3333	100.667
Ymf83|Sample_C026	Ymf83|P.sexaurelia-Sample_130	0.311552	NA	NA	501	106.143	394.857	195	94.3333	100.667
Ymf83|Sample_C026	Ymf83|P.biaurelia-Sample_379	0.344698	NA	NA	492	106.614	385.386	216	109.5	106.5
Ymf83|Sample_C026	Ymf83|P.caudatum-Sample_C104	0.101594	0.811357	0.125215	555	112.957	442.043	98	56	42
Ymf83|P.tetraurelia-Sample_291	Ymf83|P.octaurelia-Sample_1038	0.101453	0.882195	0.115001	543	121.463	421.537	103	63	40
Ymf83|P.tetraurelia-Sample_291	Ymf83|P.multimicronucleatum-Sample_M04	0.492747	0.999071	0.493205	447	91.9289	355.071	179	50.75	128.25
Ymf83|P.tetraurelia-Sample_291	Ymf83|P.sexaurelia-Sample_130	0.115536	1.22245	0.0945118	516	114.42	401.58	112	69	43
Ymf83|P.tetraurelia-Sample_291	Ymf83|P.biaurelia-Sample_379	0.10719	1.20587	0.0888896	498	112.545	385.455	106	67.5	38.5
Ymf83|P.tetraurelia-Sample_291	Ymf83|P.caudatum-Sample_C104	0.69904	0.359412	1.94496	492	110.606	381.394	205	31.5833	173.417
Ymf83|P.octaurelia-Sample_1038	Ymf83|P.multimicronucleatum-Sample_M04	0.332786	NA	NA	492	99.1522	392.848	196	90.4167	105.583
Ymf83|P.octaurelia-Sample_1038	Ymf83|P.sexaurelia-Sample_130	0.284532	0.226659	1.25533	477	120.135	356.865	108	23.5	84.5
Ymf83|P.octaurelia-Sample_1038	Ymf83|P.biaurelia-Sample_379	0.0860906	1.12491	0.0765313	498	110.705	387.295	96	64.5	31.5
Ymf83|P.octaurelia-Sample_1038	Ymf83|P.caudatum-Sample_C104	0.621151	0.377193	1.64677	492	109.638	382.362	194	32.5	161.5
Ymf83|P.multimicronucleatum-Sample_M04	Ymf83|P.sexaurelia-Sample_130	0.55925	0.517536	1.0806	426	94.5156	331.484	166	35.3333	130.667
Ymf83|P.multimicronucleatum-Sample_M04	Ymf83|P.biaurelia-Sample_379	0.374364	NA	NA	471	96.6285	374.371	208	97.6667	110.333
Ymf83|P.multimicronucleatum-Sample_M04	Ymf83|P.caudatum-Sample_C104	0.507298	0.309064	1.6414	462	89.4857	372.514	160	22.6667	137.333
Ymf83|P.sexaurelia-Sample_130	Ymf83|P.biaurelia-Sample_379	0.10181	2.08618	0.0488022	498	111.104	386.896	115	78.1667	36.8333
Ymf83|P.sexaurelia-Sample_130	Ymf83|P.caudatum-Sample_C104	0.626695	0.365602	1.71414	480	110.011	369.989	189	31.8333	157.167
Ymf83|P.biaurelia-Sample_379	Ymf83|P.caudatum-Sample_C104	0.345568	NA	NA	492	106.175	385.825	219	112.167	106.833
#Average Ka: 0.323753794118
#Average Ks: 0.780506941176
#Average KaKs: 0.709964523529