#seq1	seq2	Ka	Ks	Ka/Ks	Length	S-Sites	N-Sites	Substitutions	S-Substitutions	N-Substitutions
Ymf59|P.biaurelia-Sample_379	Ymf59|P.multimicronucleatum-Sample_M04	0.504191	1.53169	0.329174	282	57.7092	224.291	120	37.6667	82.3333
Ymf59|P.biaurelia-Sample_379	Ymf59|P.caudatum-Sample_C104	0.528121	1.09132	0.48393	297	63.3372	233.663	125	36.4167	88.5833
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_C026	0.488695	1.70875	0.285996	330	68.4584	261.542	140	46.0833	93.9167
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_M13	0.527514	1.90814	0.276454	288	60.5317	227.468	128	41.8333	86.1667
Ymf59|P.biaurelia-Sample_379	Ymf59|P.octaurelia-Sample_1038	0.175461	1.25392	0.13993	348	76.3443	271.656	89	46.5	42.5
Ymf59|P.biaurelia-Sample_379	Ymf59|P.sexaurelia-Sample_130	0.195644	1.53868	0.127151	348	77.0094	270.991	97	50.3333	46.6667
Ymf59|P.biaurelia-Sample_379	Ymf59|P.tetraurelia-Sample_291	0.130741	0.856631	0.152622	339	75.0667	263.933	70	38.3333	31.6667
Ymf59|P.biaurelia-Sample_379	Ymf59|Sample_Peniche3I	0.701271	0.447136	1.56836	255	51.9571	203.043	110	17.5	92.5
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.caudatum-Sample_C104	0.39619	0.589859	0.671669	300	56.3152	243.685	98	23	75
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_C026	0.383337	0.338211	1.13342	285	55.1	229.9	84	15	69
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_M13	0.117791	0.551601	0.213545	366	67.8549	298.145	59	26.5	32.5
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.octaurelia-Sample_1038	0.561074	1.48955	0.376673	273	56.1502	216.85	122	36.3333	85.6667
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.sexaurelia-Sample_130	0.614665	2.88086	0.213362	303	63.2467	239.753	147	46.4167	100.583
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|P.tetraurelia-Sample_291	0.600506	1.35085	0.444539	282	58.5574	223.443	129	36.6667	92.3333
Ymf59|P.multimicronucleatum-Sample_M04	Ymf59|Sample_Peniche3I	0.107563	0.782401	0.137478	366	68.2784	297.722	63	33.1667	29.8333
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_C026	0.185198	0.735149	0.251919	384	72.2051	311.795	85	33.8333	51.1667
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_M13	0.416495	0.45552	0.914327	312	59.0688	252.931	101	20.1667	80.8333
Ymf59|P.caudatum-Sample_C104	Ymf59|P.octaurelia-Sample_1038	0.704354	0.749753	0.939449	291	62.588	228.412	134	29.6667	104.333
Ymf59|P.caudatum-Sample_C104	Ymf59|P.sexaurelia-Sample_130	0.388652	NA	NA	327	69.2855	257.715	139	60.8333	78.1667
Ymf59|P.caudatum-Sample_C104	Ymf59|P.tetraurelia-Sample_291	0.680665	1.32499	0.513713	294	60.0386	233.961	142	37.3333	104.667
Ymf59|P.caudatum-Sample_C104	Ymf59|Sample_Peniche3I	0.378117	0.623695	0.606253	321	60.6084	260.392	103	25.6667	77.3333
Ymf59|Sample_C026	Ymf59|Sample_M13	0.384124	0.571748	0.671842	264	46.6589	217.341	84	18.6667	65.3333
Ymf59|Sample_C026	Ymf59|P.octaurelia-Sample_1038	0.443687	NA	NA	297	59.1266	237.873	137	57.3333	79.6667
Ymf59|Sample_C026	Ymf59|P.sexaurelia-Sample_130	0.581701	0.67472	0.862138	276	57.3087	218.691	114	25.5	88.5
Ymf59|Sample_C026	Ymf59|P.tetraurelia-Sample_291	0.552297	1.82934	0.301911	279	57.7003	221.3	126	39.5	86.5
Ymf59|Sample_C026	Ymf59|Sample_Peniche3I	0.423679	0.483755	0.875812	258	45.3475	212.652	85	16.1667	68.8333
Ymf59|Sample_M13	Ymf59|P.octaurelia-Sample_1038	0.586535	0.836866	0.70087	267	55.0305	211.969	114	27.75	86.25
Ymf59|Sample_M13	Ymf59|P.sexaurelia-Sample_130	0.580436	1.37722	0.421455	282	57.6313	224.369	127	36.3333	90.6667
Ymf59|Sample_M13	Ymf59|P.tetraurelia-Sample_291	0.641391	1.61193	0.397903	297	64.6472	232.353	143	42.8333	100.167
Ymf59|Sample_M13	Ymf59|Sample_Peniche3I	0.0346615	0.401397	0.0863521	366	70.7773	295.223	32	22	10
Ymf59|P.octaurelia-Sample_1038	Ymf59|P.sexaurelia-Sample_130	0.24198	3.09993	0.0780596	348	77.2382	270.762	113	57	56
Ymf59|P.octaurelia-Sample_1038	Ymf59|P.tetraurelia-Sample_291	0.082182	1.21488	0.067646	339	75.6376	263.362	66	45.5	20.5
Ymf59|P.octaurelia-Sample_1038	Ymf59|Sample_Peniche3I	0.678672	0.717432	0.945975	300	67.4829	232.517	135	31.1667	103.833
Ymf59|P.sexaurelia-Sample_130	Ymf59|P.tetraurelia-Sample_291	0.204401	1.66341	0.122881	339	76.305	262.695	98	51	47
Ymf59|P.sexaurelia-Sample_130	Ymf59|Sample_Peniche3I	0.67578	0.835948	0.808399	297	63.4966	233.503	136	32	104
Ymf59|P.tetraurelia-Sample_291	Ymf59|Sample_Peniche3I	0.645647	0.932137	0.692653	273	57.7858	215.214	124	30.8333	93.1667
#Average Ka: 0.432678808824
#Average Ks: 1.13115938235
#Average KaKs: 0.494525314706