cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_256-UB2-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_256-UB2-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_258-UB4-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_258-UB4-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_31-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_31-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_379-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_44-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_44-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_45-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_45-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_562alpha-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_562alpha-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_76-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_7K-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_7K-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.biaurelia-Sample_USBL-36I1-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C023-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C023-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C033-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C033-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C065-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C083-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C104-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C119-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C131-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C131-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.caudatum-Sample_C147-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.multimicronucleatum-Sample_M03-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.multimicronucleatum-Sample_M04-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.multimicronucleatum-Sample_M05-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.multimicronucleatum-Sample_M09-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.multimicronucleatum-Sample_M09-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.multimicronucleatum-Sample_M12-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.multimicronucleatum-Sample_M12-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.octaurelia-Sample_1038-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_126-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_127-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_128-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_129-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_129-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_130-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_131-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_132-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_133-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_134-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_137-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_265-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_265-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_Indo1-7I-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_116-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_116-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_291-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_298-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_47-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_47-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_51-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_51-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_98-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_98-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_99-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_A-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_A30-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_A30-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_B-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_B-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_M02-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_M02-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_16I-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_16I-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_C026-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_C026-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_Canal-1I-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_Canal-1I-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_M08-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_M08-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_M13-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_M13-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_M15-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_M15-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_Peniche3I-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_Peniche3I-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query Sample_TRB101-4-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > Sample_TRB101-4-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.sexaurelia-Sample_Moz13BIII-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn
cd /N/dc2/projects/marinovg/2015-09-07-assemblies; /N/dc2/projects/marinovg/programs/ncbi-blast-2.2.30+/bin/blastn -db /N/dc2/projects/marinovg/2015-01-29-P-assem/Parameicum_aurelia+caudatum.blastdb -query P.tetraurelia-Sample_169-SPAdes-3.5.0-trimmed/scaffolds.fasta -outfmt 6 -num_threads 16 > P.tetraurelia-Sample_169-SPAdes-3.5.0-trimmed/scaffolds.aurelia+caudatum-mito.blastn