python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/biaurelia/DNA/100709_IRIS_0005/s_7_1_sequence.txt --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/biaurelia/DNA/100709_IRIS_0005/s_7_2_sequence.txt --pe2-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/biaurelia/DNA/100727_IRIS_0006/pbia_1_sequence.txt --pe2-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/biaurelia/DNA/100727_IRIS_0006/pbia_2_sequence.txt  -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_biaurelia-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/tredecaurelia/strain_AP38/DNA/Run_141105/209_TCCGCGAA-CCTATCCT_L001_R1_001.fastq.gz --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/tredecaurelia/strain_AP38/DNA/Run_141105/209_TCCGCGAA-CCTATCCT_L001_R2_001.fastq.gz -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_tredecaurelia-SPAdes-3.5.0