python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/marinovg/2015-01-29-P-assem/biaurelia-100709_IRIS_0005-s_7_1_sequence.trimmed.paired.fastq.gz --pe1-2 /N/dc2/projects/marinovg/2015-01-29-P-assem/biaurelia-100709_IRIS_0005-s_7_2_sequence.trimmed.paired.fastq.gz --pe2-1 /N/dc2/projects/marinovg/2015-01-29-P-assem/biaurelia-100727_IRIS_0006-pbia_1_sequence.paired.fastq.gz --pe2-2 /N/dc2/projects/marinovg/2015-01-29-P-assem/biaurelia-100727_IRIS_0006-pbia_2_sequence.paired.fastq.gz  -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_biaurelia-SPAdes-3.5.0-trimmed
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/marinovg/2015-01-29-P-assem/tredecaurelia-strain_AP38--Run_141105-209_TCCGCGAA-CCTATCCT_L001_R1_001.trimmed.paired.fastq.gz --pe1-2 /N/dc2/projects/marinovg/2015-01-29-P-assem/tredecaurelia-strain_AP38--Run_141105-209_TCCGCGAA-CCTATCCT_L001_R2_001.trimmed.paired.fastq.gz -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_tredecaurelia-SPAdes-3.5.0-trimmed