python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/jenningsi/strain_M/DNA/Run_141105/M_CGGCTATG-GTACTGAC_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/jenningsi/strain_M/DNA/Run_141105/M_CGGCTATG-GTACTGAC_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_jenningsi-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/undecaurelia/strain_AP58/DNA/Run_141105/219-11_CGGCTATG-ATAGAGGC_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/undecaurelia/strain_AP58/DNA/Run_141105/219-11_CGGCTATG-ATAGAGGC_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_undecaurelia-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/sonneborni/AP59/DNA/Run_141105/Psonn_CGGCTATG-AGGCGAAG_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/sonneborni/AP59/DNA/Run_141105/Psonn_CGGCTATG-AGGCGAAG_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_sonneborni-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/putrinum/strain_BM4-1/DNA/Run_141105/BM4-1_CGGCTATG-CCTATCCT_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/putrinum/strain_BM4-1/DNA/Run_141105/BM4-1_CGGCTATG-CCTATCCT_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_putrinum-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/septaurelia/strain_227/DNA/Run_141105/227_TCCGCGAA-AGGCGAAG_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/septaurelia/strain_227/DNA/Run_141105/227_TCCGCGAA-AGGCGAAG_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_septaurelia-SPAdes-3.5.0
python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/decaurelia/strain_223/DNA/Run_141105/223_CGGCTATG-GGCTCTGA_L001_R1_001.fastq --pe1-2 /N/dc2/projects/paramecium/RAW_DATA/Paramecium/decaurelia/strain_223/DNA/Run_141105/223_CGGCTATG-GGCTCTGA_L001_R2_001.fastq -t 16 -o /N/dc2/projects/marinovg/2015-01-29-P-assem/Paramecium_decaurelia-SPAdes-3.5.0