python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG1.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG1.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG10.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG10.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG100.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG100.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG101.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG101.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG102.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG102.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG103.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG103.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG104.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG104.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG105.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG105.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG106.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG106.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG107.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG107.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG108.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG108.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG109.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG109.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG11.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG11.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG110.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG110.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG111.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG111.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG112.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG112.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG113.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG113.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG114.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG114.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG115.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG115.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG116.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG116.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG117.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG117.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG118.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG118.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG119.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG119.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG12.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG12.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG120.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG120.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG121.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG121.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG122.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG122.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG123.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG123.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG124.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG124.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG125.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG125.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG126.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG126.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG127.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG127.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG128.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG128.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG129.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG129.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG13.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG13.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG130.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG130.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG131.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG131.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG132.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG132.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG133.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG133.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG134.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG134.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG135.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG135.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG136.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG136.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG137.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG137.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG138.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG138.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG139.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG139.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG14.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG14.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG140.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG140.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG141.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG141.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG142.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG142.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG143.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG143.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG144.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG144.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG145.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG145.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG146.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG146.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG147.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG147.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG148.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG148.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG149.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG149.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG15.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG15.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG150.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG150.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG151.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG151.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG152.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG152.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG153.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG153.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG154.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG154.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG155.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG155.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG156.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG156.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG157.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG157.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG158.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG158.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG159.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG159.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG16.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG16.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG160.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG160.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG161.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG161.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG162.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG162.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG163.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG163.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG164.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG164.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG165.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG165.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG166.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG166.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG167.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG167.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG168.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG168.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG169.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG169.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG17.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG17.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG170.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG170.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG171.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG171.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG172.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG172.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG173.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG173.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG174.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG174.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG175.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG175.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG176.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG176.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG177.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG177.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG178.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG178.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG179.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG179.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG18.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG18.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG180.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG180.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG181.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG181.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG182.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG182.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG183.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG183.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG184.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG184.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG185.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG185.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG186.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG186.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG187.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG187.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG188.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG188.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG189.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG189.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG19.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG19.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG190.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG190.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG191.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG191.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG192.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG192.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG193.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG193.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG194.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG194.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG195.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG195.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG196.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG196.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG197.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG197.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG198.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG198.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG199.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG199.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG2.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG2.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG20.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG20.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG200.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG200.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG201.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG201.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG202.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG202.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG203.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG203.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG204.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG204.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG205.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG205.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG206.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG206.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG207.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG207.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG208.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG208.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG209.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG209.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG21.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG21.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG210.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG210.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG211.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG211.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG212.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG212.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG213.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG213.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG214.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG214.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG215.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG215.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG216.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG216.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG217.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG217.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG218.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG218.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG219.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG219.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG22.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG22.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG220.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG220.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG221.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG221.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG222.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG222.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG223.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG223.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG224.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG224.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG225.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG225.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG226.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG226.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG227.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG227.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG228.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG228.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG229.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG229.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG23.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG23.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG230.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG230.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG231.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG231.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG232.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG232.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG233.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG233.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG234.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG234.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG235.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG235.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG236.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG236.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG237.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG237.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG238.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG238.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG239.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG239.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG24.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG24.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG240.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG240.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG241.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG241.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG242.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG242.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG243.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG243.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG244.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG244.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG245.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG245.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG246.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG246.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG247.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG247.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG248.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG248.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG249.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG249.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG25.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG25.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG250.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG250.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG251.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG251.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG252.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG252.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG253.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG253.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG254.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG254.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG255.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG255.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG256.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG256.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG257.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG257.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG258.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG258.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG259.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG259.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG26.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG26.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG260.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG260.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG261.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG261.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG262.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG262.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG263.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG263.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG264.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG264.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG265.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG265.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG266.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG266.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG267.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG267.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG268.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG268.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG269.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG269.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG27.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG27.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG270.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG270.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG271.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG271.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG272.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG272.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG273.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG273.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG274.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG274.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG275.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG275.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG276.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG276.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG277.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG277.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG278.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG278.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG279.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG279.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG28.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG28.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG280.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG280.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG281.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG281.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG282.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG282.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG283.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG283.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG284.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG284.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG285.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG285.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG286.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG286.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG287.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG287.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG288.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG288.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG289.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG289.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG29.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG29.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG290.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG290.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG291.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG291.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG292.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG292.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG293.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG293.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG294.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG294.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG295.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG295.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG296.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG296.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG297.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG297.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG298.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG298.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG299.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG299.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG3.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG3.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG30.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG30.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG300.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG300.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG301.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG301.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG302.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG302.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG303.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG303.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG304.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG304.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG305.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG305.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG306.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG306.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG307.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG307.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG308.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG308.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG309.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG309.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG31.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG31.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG310.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG310.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG311.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG311.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG312.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG312.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG313.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG313.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG314.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG314.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG315.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG315.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG316.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG316.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG317.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG317.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG318.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG318.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG319.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG319.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG32.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG32.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG320.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG320.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG321.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG321.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG322.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG322.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG323.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG323.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG324.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG324.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG325.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG325.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG326.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG326.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG327.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG327.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG328.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG328.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG329.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG329.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG33.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG33.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG330.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG330.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG331.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG331.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG332.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG332.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG333.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG333.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG334.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG334.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG335.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG335.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG336.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG336.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG337.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG337.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG338.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG338.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG339.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG339.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG34.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG34.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG340.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG340.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG341.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG341.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG342.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG342.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG343.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG343.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG344.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG344.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG345.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG345.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG346.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG346.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG347.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG347.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG348.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG348.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG349.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG349.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG35.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG35.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG350.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG350.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG351.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG351.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG352.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG352.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG353.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG353.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG354.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG354.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG355.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG355.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG356.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG356.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG357.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG357.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG358.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG358.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG359.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG359.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG36.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG36.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG360.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG360.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG361.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG361.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG362.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG362.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG363.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG363.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG364.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG364.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG365.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG365.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG366.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG366.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG367.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG367.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG368.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG368.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG369.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG369.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG37.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG37.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG370.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG370.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG371.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG371.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG372.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG372.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG373.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG373.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG374.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG374.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG375.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG375.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG376.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG376.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG377.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG377.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG378.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG378.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG379.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG379.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG38.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG38.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG380.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG380.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG381.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG381.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG382.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG382.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG383.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG383.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG384.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG384.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG385.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG385.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG386.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG386.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG387.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG387.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG388.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG388.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG389.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG389.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG39.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG39.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG390.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG390.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG391.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG391.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG392.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG392.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG393.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG393.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG394.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG394.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG395.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG395.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG396.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG396.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG397.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG397.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG398.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG398.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG399.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG399.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG4.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG4.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG40.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG40.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG400.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG400.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG401.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG401.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG402.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG402.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG403.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG403.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG404.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG404.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG405.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG405.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG406.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG406.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG407.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG407.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG408.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG408.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG409.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG409.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG41.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG41.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG410.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG410.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG411.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG411.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG412.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG412.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG413.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG413.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG414.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG414.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG415.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG415.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG416.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG416.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG417.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG417.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG418.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG418.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG419.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG419.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG42.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG42.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG420.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG420.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG421.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG421.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG422.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG422.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG423.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG423.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG424.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG424.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG425.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG425.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG426.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG426.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG427.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG427.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG428.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG428.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG429.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG429.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG43.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG43.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG430.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG430.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG431.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG431.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG432.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG432.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG433.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG433.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG434.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG434.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG44.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG44.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG45.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG45.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG46.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG46.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG47.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG47.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG48.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG48.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG49.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG49.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG5.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG5.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG50.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG50.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG51.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG51.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG52.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG52.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG53.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG53.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG54.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG54.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG55.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG55.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG56.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG56.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG57.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG57.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG58.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG58.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG59.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG59.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG6.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG6.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG60.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG60.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG61.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG61.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG62.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG62.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG63.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG63.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG64.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG64.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG65.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG65.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG66.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG66.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG67.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG67.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG68.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG68.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG69.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG69.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG7.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG7.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG70.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG70.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG71.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG71.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG72.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG72.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG73.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG73.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG74.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG74.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG75.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG75.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG76.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG76.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG77.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG77.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG78.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG78.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG79.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG79.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG8.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG8.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG80.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG80.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG81.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG81.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG82.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG82.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG83.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG83.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG84.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG84.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG85.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG85.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG86.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG86.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG87.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG87.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG88.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG88.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG89.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG89.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG9.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG9.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG90.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG90.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG91.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG91.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG92.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG92.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG93.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG93.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG94.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG94.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG95.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG95.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG96.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG96.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG97.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG97.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG98.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG98.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
python /N/dc2/projects/marinovg/code/fastaBlocks.py /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG99.fa 100 /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix/Output/HOGFasta/HOG99.renamed.fa -replaceNames /N/dc2/projects/marinovg/2015-04-22-TFs/OMA-leq1e-4-fix_HOGfasta_old_to_new_names
