Index of /kundaje/marinovg/oak/Paramecium/GenomeAssemblies/2015-10-29-Haemophilus_ducreyi

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]CISA.final+PB1000-vs-Haemophilus_ducreyi_35000HP_uid57625.blast2015-11-01 14:51 7.9M 
[ ]CISA.final+PB1000-vs-Haemophilus_ducreyi_35000HP_uid57625.maf2015-11-01 14:46 4.0M 
[ ]CISA.final+PB1000-vs-Haemophilus_ducreyi_35000HP_uid57625.psl2015-11-01 14:53 147K 
[ ]CISA.final+PB1000.6666666.154605.ec-stripped.gff2015-11-01 14:34 222K 
[ ]CISA.final+PB1000.6666666.154605.ec-stripped.gtf2015-11-01 14:33 222K 
[ ]CISA.final+PB1000.N50N902015-11-01 16:02 21  
[ ]CISA.final+PB1000.RAST.ec-stripped.gtf2015-11-01 14:35 818K 
[ ]CISA.final+PB1000.RAST.ec-stripped.norRNA.gtf2015-11-01 14:37 801K 
[ ]CISA.final+PB1000.RAST.ec-stripped.norRNA.hist2015-11-01 14:41 19  
[ ]CISA.final+PB1000.RFAM12-cmscan2015-11-01 14:19 648K 
[ ]CISA.final+PB1000.RFAM12-cmscan.edited.gtf2015-11-01 14:39 4.3K 
[ ]CISA.final+PB1000.RFAM12-cmscan.gtf2015-11-01 14:21 15K 
[ ]CISA.final+PB1000.chrom.sizes2015-11-01 13:43 465  
[ ]CISA.final+PB1000.fa2015-11-01 13:42 1.7M 
[IMG]CISA.final+PB1000.final.ORF2015-11-01 15:43 788K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp2015-11-01 17:03 3.0M 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.e1e-102015-11-01 17:03 535K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.e1e-10.hist2015-11-01 17:05 107K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.e1e-502015-11-01 17:03 328K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.e1e-50.hist2015-11-01 17:06 100K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.hist2015-11-01 17:06 108K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.matches2015-11-01 18:29 108K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.matches.curated2015-11-01 18:34 108K 
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.matches.curated.hist2015-11-01 18:56 24  
[IMG]CISA.final+PB1000.final.ORF-vs-NC_002940.final.ORF.blastp.matches.hist2015-11-01 18:23 12  
[ ]CISA.final+PB1000.final.ORF-vs-NC_002940.final.common2015-11-01 16:34 57K 
[ ]CISA.final+PB1000.final.ORF-vs-NC_002940.final.outersect12015-11-01 16:35 258  
[ ]CISA.final+PB1000.final.ORF-vs-NC_002940.final.outersect22015-11-01 16:36 559  
[IMG]CISA.final+PB1000.final.ORF.blastdb.phr2015-11-01 16:58 208K 
[IMG]CISA.final+PB1000.final.ORF.blastdb.pin2015-11-01 16:58 13K 
[IMG]CISA.final+PB1000.final.ORF.blastdb.psq2015-11-01 16:58 491K 
[IMG]CISA.final+PB1000.final.ORF.faa2015-11-01 16:58 597K 
[ ]CISA.final+PB1000.final.gtf2015-11-01 15:43 807K 
[ ]CISA.final+PB1000.rnammer2015-11-01 14:10 1.5K 
[ ]CISA.final+PB1000.rnammer.gtf2015-11-01 15:43 1.7K 
[ ]CISA.final+PB1000.tRNAscan2015-11-01 14:12 2.1K 
[ ]CISA.final+PB1000.tRNAscan.SS2015-11-01 14:12 16K 
[ ]CISA.final+PB1000.tRNAscan.gtf2015-11-01 14:24 14K 
[DIR]CISA1.3/2015-11-01 13:42 -  
[ ]Haemophilus_ducreyi_35000HP_uid57625.bck2015-11-01 14:46 1.4M 
[ ]Haemophilus_ducreyi_35000HP_uid57625.des2015-11-01 14:46 28  
[ ]Haemophilus_ducreyi_35000HP_uid57625.prj2015-11-01 14:46 460  
[ ]Haemophilus_ducreyi_35000HP_uid57625.sds2015-11-01 14:46 8  
[ ]Haemophilus_ducreyi_35000HP_uid57625.ssp2015-11-01 14:46 8  
[ ]Haemophilus_ducreyi_35000HP_uid57625.suf2015-11-01 14:46 6.4M 
[ ]Haemophilus_ducreyi_35000HP_uid57625.tis2015-11-01 14:46 1.6M 
[DIR]IB0001-Haemophilus_ducreyi-SPAdes-3.5.0-2x150mers-trimmed/2015-11-01 18:59 -  
[DIR]IB0001-Haemophilus_ducreyi-SPAdes-3.5.0-2x250mers-trimmed/2015-11-01 18:59 -  
[ ]IB0001_1.150mers.fastq.bases2015-10-30 04:17 8  
[ ]IB0001_1.150mers.fastq.lines2015-10-30 04:20 8  
[ ]IB0001_1.150mers.paired.fastq.bases2015-10-30 04:24 42  
[ ]IB0001_1.150mers.paired.fastq.lines2015-10-30 04:24 8  
[ ]IB0001_1.fastq.bases2015-10-30 04:16 42  
[ ]IB0001_1.fastq.gz2015-10-29 21:15 392M 
[ ]IB0001_1.fastq.lines2015-10-30 04:20 8  
[ ]IB0001_1.paired.fastq.bases2015-10-30 04:24 42  
[ ]IB0001_1.paired.fastq.lines2015-10-30 04:24 8  
[ ]IB0001_2.150mers.fastq.bases2015-10-30 04:17 8  
[ ]IB0001_2.150mers.fastq.lines2015-10-30 04:20 8  
[ ]IB0001_2.150mers.paired.fastq.bases2015-10-30 04:24 42  
[ ]IB0001_2.150mers.paired.fastq.lines2015-10-30 04:24 8  
[ ]IB0001_2.fastq.bases2015-10-30 04:16 42  
[ ]IB0001_2.fastq.gz2015-10-29 21:16 421M 
[ ]IB0001_2.fastq.lines2015-10-30 04:20 8  
[ ]IB0001_2.paired.fastq.bases2015-10-30 04:24 42  
[ ]IB0001_2.paired.fastq.lines2015-10-30 04:24 8  
[DIR]IB001-2x150-k31/2015-10-30 16:15 -  
[DIR]IB001-2x150-k41/2015-10-30 16:15 -  
[DIR]IB001-2x150-k51/2015-10-30 16:16 -  
[DIR]IB001-2x150-k61/2015-10-30 16:16 -  
[DIR]IB001-2x150-k71/2015-10-30 16:15 -  
[DIR]IB001-2x150-k77/2015-10-30 16:15 -  
[DIR]IB001-2x250-k31/2015-10-30 16:15 -  
[DIR]IB001-2x250-k41/2015-10-30 16:15 -  
[DIR]IB001-2x250-k51/2015-10-30 16:16 -  
[DIR]IB001-2x250-k61/2015-10-30 16:16 -  
[DIR]IB001-2x250-k71/2015-10-30 16:15 -  
[DIR]IB001-2x250-k77/2015-10-30 16:15 -  
[ ]NC_002940.6666666.154610.ec-stripped.gff2015-11-01 16:29 255K 
[ ]NC_002940.6666666.154610.ec-stripped.gtf2015-11-01 16:29 255K 
[ ]NC_002940.RAST.ec-stripped.gtf2015-11-01 16:30 867K 
[ ]NC_002940.RAST.ec-stripped.norRNA.gtf2015-11-01 16:30 839K 
[ ]NC_002940.RAST.ec-stripped.norRNA.hist2015-11-01 16:30 19  
[ ]NC_002940.RFAM12-cmscan2015-11-01 15:42 1.0M 
[ ]NC_002940.RFAM12-cmscan.edited.gtf2015-11-01 15:47 4.7K 
[ ]NC_002940.RFAM12-cmscan.gtf2015-11-01 15:45 23K 
[ ]NC_002940.fa2015-11-01 14:56 1.6M 
[IMG]NC_002940.final.ORF2015-11-01 16:30 818K 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp2015-11-01 17:03 3.0M 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.e1e-102015-11-01 17:03 536K 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.e1e-502015-11-01 17:03 328K 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.matches2015-11-01 18:23 146K 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.matches.curated2015-11-01 18:55 146K 
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.matches.curated.hist2015-11-01 18:56 28  
[IMG]NC_002940.final.ORF-vs-CISA.final+PB1000.final.ORF.blastp.matches.hist2015-11-01 18:23 12  
[IMG]NC_002940.final.ORF.blastdb.phr2015-11-01 16:58 247K 
[IMG]NC_002940.final.ORF.blastdb.pin2015-11-01 16:58 13K 
[IMG]NC_002940.final.ORF.blastdb.psq2015-11-01 16:58 481K 
[IMG]NC_002940.final.ORF.faa2015-11-01 16:58 625K 
[ ]NC_002940.final.gtf2015-11-01 16:30 850K 
[ ]NC_002940.rnammer2015-11-01 15:40 4.0K 
[ ]NC_002940.rnammer.gtf2015-11-01 15:45 6.2K 
[ ]NC_002940.tRNAscan2015-11-01 15:38 3.4K 
[ ]NC_002940.tRNAscan.SS2015-11-01 15:38 18K 
[ ]NC_002940.tRNAscan.gtf2015-11-01 15:45 17K 
[ ]PB1000.fa2015-11-01 11:56 4.7K 
[TXT]SPAdes.sh2015-10-29 22:32 570  
[TXT]Trimmomatic.sh2015-10-29 21:13 1.4K 
[TXT]blastp.sh2015-11-01 17:02 1.1K 
[DIR]edena-MS-1-assembly-2x150/2015-10-30 08:20 -  
[DIR]edena-MS-1-assembly-2x200/2015-11-01 12:31 -  
[DIR]edena-MS-1-assembly-2x250/2015-10-30 08:20 -  
[DIR]idba-2x150/2015-11-01 12:31 -  
[DIR]idba-2x250/2015-10-30 08:31 -  
[TXT]infernal.sh2015-11-01 14:06 251  
[TXT]tRNAscan-SE.sh2015-11-01 14:07 456  
[TXT]velvetg.sh2015-10-30 08:15 2.8K 
[TXT]velveth.sh2015-10-30 08:15 4.3K 
[ ]z2015-11-01 17:55 191  
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443