segment_juncs v2.0.8 (3864) --------------------------- [samopen] SAM header is present: 711 sequences. Loading reference sequences... 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scaffold_0340...done Loading scaffold_0341...done Loading scaffold_0342...done Loading scaffold_0343...done Loading scaffold_0344...done Loading scaffold_0345...done Loading scaffold_0346...done Loading scaffold_0347...done Loading scaffold_0348...done Loading scaffold_0349...done Loading scaffold_0350...done Loading scaffold_0351...done Loading scaffold_0352...done Loading scaffold_0353...done Loading scaffold_0354...done Loading scaffold_0355...done Loading scaffold_0356...done Loading scaffold_0357...done Loading scaffold_0358...done Loading scaffold_0359...done Loading scaffold_0360...done Loading scaffold_0361...done Loading scaffold_0362...done Loading scaffold_0363...done Loading scaffold_0364...done Loading scaffold_0365...done Loading scaffold_0366...done Loading scaffold_0367...done Loading scaffold_0368...done Loading scaffold_0369...done Loading scaffold_0370...done Loading scaffold_0371...done Loading scaffold_0372...done Loading scaffold_0373...done Loading 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scaffold_0442...done Loading scaffold_0443...done Loading scaffold_0444...done Loading scaffold_0445...done Loading scaffold_0446...done Loading scaffold_0447...done Loading scaffold_0448...done Loading scaffold_0449...done Loading scaffold_0450...done Loading scaffold_0451...done Loading scaffold_0452...done Loading scaffold_0453...done Loading scaffold_0454...done Loading scaffold_0455...done Loading scaffold_0456...done Loading scaffold_0457...done Loading scaffold_0458...done Loading scaffold_0459...done Loading scaffold_0460...done Loading scaffold_0461...done Loading scaffold_0462...done Loading scaffold_0463...done Loading scaffold_0464...done Loading scaffold_0465...done Loading scaffold_0466...done Loading scaffold_0467...done Loading scaffold_0468...done Loading scaffold_0469...done Loading scaffold_0470...done Loading scaffold_0471...done Loading scaffold_0472...done Loading scaffold_0473...done Loading scaffold_0474...done Loading scaffold_0475...done Loading scaffold_0476...done Loading scaffold_0477...done Loading scaffold_0478...done Loading scaffold_0479...done Loading scaffold_0480...done Loading scaffold_0481...done Loading scaffold_0482...done Loading scaffold_0483...done Loading scaffold_0484...done Loading scaffold_0485...done Loading scaffold_0486...done Loading scaffold_0487...done Loading scaffold_0488...done Loading scaffold_0489...done Loading scaffold_0490...done Loading scaffold_0491...done Loading scaffold_0492...done Loading scaffold_0493...done Loading scaffold_0494...done Loading scaffold_0495...done Loading scaffold_0496...done Loading scaffold_0497...done Loading scaffold_0498...done Loading scaffold_0499...done Loading scaffold_0500...done Loading scaffold_0501...done Loading scaffold_0502...done Loading scaffold_0503...done Loading scaffold_0504...done Loading scaffold_0505...done Loading scaffold_0506...done Loading scaffold_0507...done Loading scaffold_0508...done Loading scaffold_0509...done Loading scaffold_0510...done Loading scaffold_0511...done Loading scaffold_0512...done Loading scaffold_0513...done Loading scaffold_0514...done Loading scaffold_0515...done Loading scaffold_0516...done Loading scaffold_0517...done Loading scaffold_0518...done Loading scaffold_0519...done Loading scaffold_0520...done Loading scaffold_0521...done Loading scaffold_0522...done Loading scaffold_0523...done Loading scaffold_0524...done Loading scaffold_0525...done Loading scaffold_0526...done Loading scaffold_0527...done Loading scaffold_0528...done Loading scaffold_0529...done Loading scaffold_0530...done Loading scaffold_0531...done Loading scaffold_0532...done Loading scaffold_0533...done Loading scaffold_0534...done Loading scaffold_0535...done Loading scaffold_0536...done Loading scaffold_0537...done Loading scaffold_0538...done Loading scaffold_0539...done Loading scaffold_0540...done Loading scaffold_0541...done Loading scaffold_0542...done Loading scaffold_0543...done Loading 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scaffold_0578...done Loading scaffold_0579...done Loading scaffold_0580...done Loading scaffold_0581...done Loading scaffold_0582...done Loading scaffold_0583...done Loading scaffold_0584...done Loading scaffold_0585...done Loading scaffold_0586...done Loading scaffold_0587...done Loading scaffold_0588...done Loading scaffold_0589...done Loading scaffold_0590...done Loading scaffold_0591...done Loading scaffold_0592...done Loading scaffold_0593...done Loading scaffold_0594...done Loading scaffold_0595...done Loading scaffold_0596...done Loading scaffold_0597...done Loading scaffold_0598...done Loading scaffold_0599...done Loading scaffold_0600...done Loading scaffold_0601...done Loading scaffold_0602...done Loading scaffold_0603...done Loading scaffold_0604...done Loading scaffold_0605...done Loading scaffold_0606...done Loading scaffold_0607...done Loading scaffold_0608...done Loading scaffold_0609...done Loading scaffold_0610...done Loading scaffold_0611...done Loading scaffold_0612...done Loading scaffold_0613...done Loading scaffold_0614...done Loading scaffold_0615...done Loading scaffold_0616...done Loading scaffold_0617...done Loading scaffold_0618...done Loading scaffold_0619...done Loading scaffold_0620...done Loading scaffold_0621...done Loading scaffold_0622...done Loading scaffold_0623...done Loading scaffold_0624...done Loading scaffold_0625...done Loading scaffold_0626...done Loading scaffold_0627...done Loading scaffold_0628...done Loading scaffold_0629...done Loading scaffold_0630...done Loading scaffold_0631...done Loading scaffold_0632...done Loading scaffold_0633...done Loading scaffold_0634...done Loading scaffold_0635...done Loading scaffold_0636...done Loading scaffold_0637...done Loading scaffold_0638...done Loading scaffold_0639...done Loading scaffold_0640...done Loading scaffold_0641...done Loading scaffold_0642...done Loading scaffold_0643...done Loading scaffold_0644...done Loading scaffold_0645...done Loading scaffold_0646...done Loading scaffold_0647...done Loading scaffold_0648...done Loading scaffold_0649...done Loading scaffold_0650...done Loading scaffold_0651...done Loading scaffold_0652...done Loading scaffold_0653...done Loading scaffold_0654...done Loading scaffold_0655...done Loading scaffold_0656...done Loading scaffold_0657...done Loading scaffold_0658...done Loading scaffold_0659...done Loading scaffold_0660...done Loading scaffold_0661...done Loading scaffold_0662...done Loading scaffold_0663...done Loading scaffold_0664...done Loading scaffold_0665...done Loading scaffold_0666...done Loading scaffold_0667...done Loading scaffold_0668...done Loading scaffold_0669...done Loading scaffold_0670...done Loading scaffold_0671...done Loading scaffold_0672...done Loading scaffold_0673...done Loading scaffold_0674...done Loading scaffold_0675...done Loading scaffold_0676...done Loading scaffold_0677...done Loading scaffold_0678...done Loading scaffold_0679...done Loading scaffold_0680...done Loading scaffold_0681...done Loading scaffold_0682...done Loading scaffold_0683...done Loading scaffold_0684...done Loading scaffold_0685...done Loading scaffold_0686...done Loading scaffold_0687...done Loading scaffold_0688...done Loading scaffold_0689...done Loading scaffold_0690...done Loading scaffold_0691...done Loading scaffold_0692...done Loading scaffold_0693...done Loading scaffold_0694...done Loading scaffold_0695...done Loading scaffold_0696...done Loading scaffold_0697...done Loading scaffold_0698...done Loading scaffold_0699...done Loading scaffold_0700...done Loading scaffold_0701...done Loading scaffold_0702...done Loading scaffold_0703...done Loading scaffold_0704...done Loading scaffold_0705...done Loading scaffold_0706...done Loading scaffold_0707...done Loading scaffold_0708...done Loading scaffold_0709...done Loading scaffold_0710...done Loading ...done >> Performing segment-search: Loading left segment hits... done. Loading right segment hits... done. found 76211 potential split-segment junctions found 40124 potential small deletions found 9797 potential small insertions >> Performing microexon-search: Aligning 2223843 microexon segments in 41055 windows window 100 window 200 window 300 window 400 window 500 window 600 window 700 window 800 window 900 window 1000 window 1100 window 1200 window 1300 window 1400 window 1500 window 1600 window 1700 window 1800 window 1900 window 2000 window 2100 window 2200 window 2300 window 2400 window 2500 window 2600 window 2700 window 2800 window 2900 window 3000 window 3100 window 3200 window 3300 window 3400 window 3500 window 3600 window 3700 window 3800 window 3900 window 4000 window 4100 window 4200 window 4300 window 4400 window 4500 window 4600 window 4700 window 4800 window 4900 window 5000 window 5100 window 5200 window 5300 window 5400 window 5500 window 5600 window 5700 window 5800 window 5900 window 6000 window 6100 window 6200 window 6300 window 6400 window 6500 window 6600 window 6700 window 6800 window 6900 window 7000 window 7100 window 7200 window 7300 window 7400 window 7500 window 7600 window 7700 window 7800 window 7900 window 8000 window 8100 window 8200 window 8300 window 8400 window 8500 window 8600 window 8700 window 8800 window 8900 window 9000 window 9100 window 9200 window 9300 window 9400 window 9500 window 9600 window 9700 window 9800 window 9900 window 10000 window 10100 window 10200 window 10300 window 10400 window 10500 window 10600 window 10700 window 10800 window 10900 window 11000 window 11100 window 11200 window 11300 window 11400 window 11500 window 11600 window 11700 window 11800 window 11900 window 12000 window 12100 window 12200 window 12300 window 12400 window 12500 window 12600 window 12700 window 12800 window 12900 window 13000 window 13100 window 13200 window 13300 window 13400 window 13500 window 13600 window 13700 window 13800 window 13900 window 14000 window 14100 window 14200 window 14300 window 14400 window 14500 window 14600 window 14700 window 14800 window 14900 window 15000 window 15100 window 15200 window 15300 window 15400 window 15500 window 15600 window 15700 window 15800 window 15900 window 16000 window 16100 window 16200 window 16300 window 16400 window 16500 window 16600 window 16700 window 16800 window 16900 window 17000 window 17100 window 17200 window 17300 window 17400 window 17500 window 17600 window 17700 window 17800 window 17900 window 18000 window 18100 window 18200 window 18300 window 18400 window 18500 window 18600 window 18700 window 18800 window 18900 window 19000 window 19100 window 19200 window 19300 window 19400 window 19500 window 19600 window 19700 window 19800 window 19900 window 20000 window 20100 window 20200 window 20300 window 20400 window 20500 window 20600 window 20700 window 20800 window 20900 window 21000 window 21100 window 21200 window 21300 window 21400 window 21500 window 21600 window 21700 window 21800 window 21900 window 22000 window 22100 window 22200 window 22300 window 22400 window 22500 window 22600 window 22700 window 22800 window 22900 window 23000 window 23100 window 23200 window 23300 window 23400 window 23500 window 23600 window 23700 window 23800 window 23900 window 24000 window 24100 window 24200 window 24300 window 24400 window 24500 window 24600 window 24700 window 24800 window 24900 window 25000 window 25100 window 25200 window 25300 window 25400 window 25500 window 25600 window 25700 window 25800 window 25900 window 26000 window 26100 window 26200 window 26300 window 26400 window 26500 window 26600 window 26700 window 26800 window 26900 window 27000 window 27100 window 27200 window 27300 window 27400 window 27500 window 27600 window 27700 window 27800 window 27900 window 28000 window 28100 window 28200 window 28300 window 28400 window 28500 window 28600 window 28700 window 28800 window 28900 window 29000 window 29100 window 29200 window 29300 window 29400 window 29500 window 29600 window 29700 window 29800 window 29900 window 30000 window 30100 window 30200 window 30300 window 30400 window 30500 window 30600 window 30700 window 30800 window 30900 window 31000 window 31100 window 31200 window 31300 window 31400 window 31500 window 31600 window 31700 window 31800 window 31900 window 32000 window 32100 window 32200 window 32300 window 32400 window 32500 window 32600 window 32700 window 32800 window 32900 window 33000 window 33100 window 33200 window 33300 window 33400 window 33500 window 33600 window 33700 window 33800 window 33900 window 34000 window 34100 window 34200 window 34300 window 34400 window 34500 window 34600 window 34700 window 34800 window 34900 window 35000 window 35100 window 35200 window 35300 window 35400 window 35500 window 35600 window 35700 window 35800 window 35900 window 36000 window 36100 window 36200 window 36300 window 36400 window 36500 window 36600 window 36700 window 36800 window 36900 window 37000 window 37100 window 37200 window 37300 window 37400 window 37500 window 37600 window 37700 window 37800 window 37900 window 38000 window 38100 window 38200 window 38300 window 38400 window 38500 window 38600 window 38700 window 38800 window 38900 window 39000 window 39100 window 39200 window 39300 window 39400 window 39500 window 39600 window 39700 window 39800 window 39900 window 40000 window 40100 window 40200 window 40300 window 40400 window 40500 window 40600 window 40700 window 40800 window 40900 window 41000 Checked 4447686 segments against 41055 windows for microexon junctions Found 18117 potential microexon junctions found 18117 potential junctions Reported 87725 total potential splices Reporting 40124 potential deletions... Reporting 9797 potential insertions... Reporting potential fusions...