segment_juncs v2.0.8 (3864) --------------------------- [samopen] SAM header is present: 677 sequences. Loading reference sequences... 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scaffold_675...done Loading scaffold_676...done Loading scaffold_677...done Loading ...done >> Performing segment-search: Loading left segment hits... done. Loading right segment hits... done. found 92876 potential split-segment junctions found 15513 potential small deletions found 7466 potential small insertions >> Performing microexon-search: Aligning 12346089 microexon segments in 50170 windows window 100 window 200 window 300 window 400 window 500 window 600 window 700 window 800 window 900 window 1000 window 1100 window 1200 window 1300 window 1400 window 1500 window 1600 window 1700 window 1800 window 1900 window 2000 window 2100 window 2200 window 2300 window 2400 window 2500 window 2600 window 2700 window 2800 window 2900 window 3000 window 3100 window 3200 window 3300 window 3400 window 3500 window 3600 window 3700 window 3800 window 3900 window 4000 window 4100 window 4200 window 4300 window 4400 window 4500 window 4600 window 4700 window 4800 window 4900 window 5000 window 5100 window 5200 window 5300 window 5400 window 5500 window 5600 window 5700 window 5800 window 5900 window 6000 window 6100 window 6200 window 6300 window 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window 29800 window 29900 window 30000 window 30100 window 30200 window 30300 window 30400 window 30500 window 30600 window 30700 window 30800 window 30900 window 31000 window 31100 window 31200 window 31300 window 31400 window 31500 window 31600 window 31700 window 31800 window 31900 window 32000 window 32100 window 32200 window 32300 window 32400 window 32500 window 32600 window 32700 window 32800 window 32900 window 33000 window 33100 window 33200 window 33300 window 33400 window 33500 window 33600 window 33700 window 33800 window 33900 window 34000 window 34100 window 34200 window 34300 window 34400 window 34500 window 34600 window 34700 window 34800 window 34900 window 35000 window 35100 window 35200 window 35300 window 35400 window 35500 window 35600 window 35700 window 35800 window 35900 window 36000 window 36100 window 36200 window 36300 window 36400 window 36500 window 36600 window 36700 window 36800 window 36900 window 37000 window 37100 window 37200 window 37300 window 37400 window 37500 window 37600 window 37700 window 37800 window 37900 window 38000 window 38100 window 38200 window 38300 window 38400 window 38500 window 38600 window 38700 window 38800 window 38900 window 39000 window 39100 window 39200 window 39300 window 39400 window 39500 window 39600 window 39700 window 39800 window 39900 window 40000 window 40100 window 40200 window 40300 window 40400 window 40500 window 40600 window 40700 window 40800 window 40900 window 41000 window 41100 window 41200 window 41300 window 41400 window 41500 window 41600 window 41700 window 41800 window 41900 window 42000 window 42100 window 42200 window 42300 window 42400 window 42500 window 42600 window 42700 window 42800 window 42900 window 43000 window 43100 window 43200 window 43300 window 43400 window 43500 window 43600 window 43700 window 43800 window 43900 window 44000 window 44100 window 44200 window 44300 window 44400 window 44500 window 44600 window 44700 window 44800 window 44900 window 45000 window 45100 window 45200 window 45300 window 45400 window 45500 window 45600 window 45700 window 45800 window 45900 window 46000 window 46100 window 46200 window 46300 window 46400 window 46500 window 46600 window 46700 window 46800 window 46900 window 47000 window 47100 window 47200 window 47300 window 47400 window 47500 window 47600 window 47700 window 47800 window 47900 window 48000 window 48100 window 48200 window 48300 window 48400 window 48500 window 48600 window 48700 window 48800 window 48900 window 49000 window 49100 window 49200 window 49300 window 49400 window 49500 window 49600 window 49700 window 49800 window 49900 window 50000 window 50100 Checked 24692178 segments against 50170 windows for microexon junctions Found 5962 potential microexon junctions found 5962 potential junctions Reported 96629 total potential splices Reporting 15513 potential deletions... Reporting 7466 potential insertions... Reporting potential fusions...