cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 Sample_blank.end1.fastq.paired.trimmed.gz --pe1-2 Sample_blank.end2.fastq.paired.trimmed.gz -t 16 -o Sample_blank-SPAdes-3.5.0-trimmed
cd /N/dc2/projects/marinovg/2015-02-24-Paramecium-RNA-seq; python /N/dc2/projects/marinovg/programs/SPAdes-3.5.0-Linux/bin/spades.py --pe1-1 Sample_blank.end1.fastq.gz --pe1-2 Sample_blank.end2.fastq.gz -t 16 -o Sample_blank-SPAdes-3.5.0