/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.AT5G18090_col_a-GSM1925002.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.AT5G18090_col_a-GSM1925002.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.AT5G18090_col_a-GSM1925002.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.AT5G18090_col_a-GSM1925002.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.AT5G18090_col_a-GSM1925002.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.AT5G25475_col_a-GSM1925003.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.AT5G25475_col_a-GSM1925003.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.AT5G25475_col_a-GSM1925003.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.AT5G25475_col_a-GSM1925003.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.AT5G25475_col_a-GSM1925003.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.AT5G60130_col_a-GSM1925005.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.AT5G60130_col_a-GSM1925005.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.AT5G60130_col_a-GSM1925005.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.AT5G60130_col_a-GSM1925005.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.AT5G60130_col_a-GSM1925005.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.AT5G60130_colamp_a-GSM1925004.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.AT5G60130_colamp_a-GSM1925004.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.AT5G60130_colamp_a-GSM1925004.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.AT5G60130_colamp_a-GSM1925004.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.AT5G60130_colamp_a-GSM1925004.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.FUS3_col_a-GSM1925006.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.FUS3_col_a-GSM1925006.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.FUS3_col_a-GSM1925006.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.FUS3_col_a-GSM1925006.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.FUS3_col_a-GSM1925006.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.NGA4_col_a-GSM1925007.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.NGA4_col_a-GSM1925007.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.NGA4_col_a-GSM1925007.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.NGA4_col_a-GSM1925007.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.NGA4_col_a-GSM1925007.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.REM16_col_a-GSM1925008.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.REM16_col_a-GSM1925008.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.REM16_col_a-GSM1925008.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.REM16_col_a-GSM1925008.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.REM16_col_a-GSM1925008.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples ABI3VP1_tnt.VRN1_colamp_a-GSM1925009.50mers.TAIR10.unique.pseudoRep1-SPP-300K/ABI3VP1_tnt.VRN1_colamp_a-GSM1925009.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz ABI3VP1_tnt.VRN1_colamp_a-GSM1925009.50mers.TAIR10.unique.pseudoRep2-SPP-300K/ABI3VP1_tnt.VRN1_colamp_a-GSM1925009.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-ABI3VP1_tnt.VRN1_colamp_a-GSM1925009.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g19210_col_a-GSM1925033.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g19210_col_a-GSM1925033.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g19210_col_a-GSM1925033.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g19210_col_a-GSM1925033.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g19210_col_a-GSM1925033.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g19210_colamp_a-GSM1925032.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g19210_colamp_a-GSM1925032.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g19210_colamp_a-GSM1925032.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g19210_colamp_a-GSM1925032.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g19210_colamp_a-GSM1925032.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g22810_colamp_a-GSM1925034.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g22810_colamp_a-GSM1925034.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g22810_colamp_a-GSM1925034.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g22810_colamp_a-GSM1925034.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g22810_colamp_a-GSM1925034.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G28160_col_a-GSM1925020.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G28160_col_a-GSM1925020.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G28160_col_a-GSM1925020.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G28160_col_a-GSM1925020.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G28160_col_a-GSM1925020.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g36060_col_a-GSM1925036.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g36060_col_a-GSM1925036.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g36060_col_a-GSM1925036.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g36060_col_a-GSM1925036.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g36060_col_a-GSM1925036.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g36060_colamp_a-GSM1925035.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g36060_colamp_a-GSM1925035.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g36060_colamp_a-GSM1925035.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g36060_colamp_a-GSM1925035.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g36060_colamp_a-GSM1925035.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G44830_col_a-GSM1925021.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G44830_col_a-GSM1925021.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G44830_col_a-GSM1925021.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G44830_col_a-GSM1925021.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G44830_col_a-GSM1925021.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G71450_col_a-GSM1925023.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G71450_col_a-GSM1925023.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G71450_col_a-GSM1925023.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G71450_col_a-GSM1925023.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G71450_col_a-GSM1925023.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G71450_colamp_a-GSM1925022.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G71450_colamp_a-GSM1925022.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G71450_colamp_a-GSM1925022.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G71450_colamp_a-GSM1925022.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G71450_colamp_a-GSM1925022.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g75490_col_a-GSM1925038.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g75490_col_a-GSM1925038.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g75490_col_a-GSM1925038.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g75490_col_a-GSM1925038.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g75490_col_a-GSM1925038.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g75490_colamp_a-GSM1925037.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g75490_colamp_a-GSM1925037.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g75490_colamp_a-GSM1925037.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g75490_colamp_a-GSM1925037.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g75490_colamp_a-GSM1925037.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G77200_col_a-GSM1925025.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G77200_col_a-GSM1925025.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G77200_col_a-GSM1925025.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G77200_col_a-GSM1925025.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G77200_col_a-GSM1925025.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT1G77200_colamp_a-GSM1925024.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT1G77200_colamp_a-GSM1925024.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT1G77200_colamp_a-GSM1925024.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT1G77200_colamp_a-GSM1925024.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT1G77200_colamp_a-GSM1925024.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At1g77640_col_a-GSM1925039.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At1g77640_col_a-GSM1925039.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At1g77640_col_a-GSM1925039.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At1g77640_col_a-GSM1925039.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At1g77640_col_a-GSM1925039.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At2g33710_colamp_a-GSM1925040.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At2g33710_colamp_a-GSM1925040.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At2g33710_colamp_a-GSM1925040.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At2g33710_colamp_a-GSM1925040.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At2g33710_colamp_a-GSM1925040.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At2g44940_col_a-GSM1925042.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At2g44940_col_a-GSM1925042.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At2g44940_col_a-GSM1925042.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At2g44940_col_a-GSM1925042.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At2g44940_col_a-GSM1925042.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At2g44940_colamp_a-GSM1925041.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At2g44940_colamp_a-GSM1925041.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At2g44940_colamp_a-GSM1925041.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At2g44940_colamp_a-GSM1925041.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At2g44940_colamp_a-GSM1925041.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT3G16280_col_a-GSM1925027.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT3G16280_col_a-GSM1925027.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT3G16280_col_a-GSM1925027.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT3G16280_col_a-GSM1925027.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT3G16280_col_a-GSM1925027.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT3G16280_colamp_a-GSM1925026.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT3G16280_colamp_a-GSM1925026.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT3G16280_colamp_a-GSM1925026.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT3G16280_colamp_a-GSM1925026.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT3G16280_colamp_a-GSM1925026.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT3G57600_col_a-GSM1925028.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT3G57600_col_a-GSM1925028.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT3G57600_col_a-GSM1925028.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT3G57600_col_a-GSM1925028.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT3G57600_col_a-GSM1925028.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT3G60490_col_a-GSM1925030.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT3G60490_col_a-GSM1925030.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT3G60490_col_a-GSM1925030.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT3G60490_col_a-GSM1925030.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT3G60490_col_a-GSM1925030.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT3G60490_colamp_a-GSM1925029.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT3G60490_colamp_a-GSM1925029.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT3G60490_colamp_a-GSM1925029.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT3G60490_colamp_a-GSM1925029.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT3G60490_colamp_a-GSM1925029.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g16750_col_a-GSM1925044.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g16750_col_a-GSM1925044.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g16750_col_a-GSM1925044.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g16750_col_a-GSM1925044.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g16750_col_a-GSM1925044.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g16750_colamp_a-GSM1925043.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g16750_colamp_a-GSM1925043.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g16750_colamp_a-GSM1925043.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g16750_colamp_a-GSM1925043.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g16750_colamp_a-GSM1925043.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.AT4G18450_col_a-GSM1925031.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.AT4G18450_col_a-GSM1925031.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.AT4G18450_col_a-GSM1925031.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.AT4G18450_col_a-GSM1925031.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.AT4G18450_col_a-GSM1925031.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g28140_col_a-GSM1925046.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g28140_col_a-GSM1925046.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g28140_col_a-GSM1925046.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g28140_col_a-GSM1925046.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g28140_col_a-GSM1925046.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g28140_colamp_a-GSM1925045.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g28140_colamp_a-GSM1925045.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g28140_colamp_a-GSM1925045.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g28140_colamp_a-GSM1925045.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g28140_colamp_a-GSM1925045.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g31060_col_a-GSM1925048.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g31060_col_a-GSM1925048.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g31060_col_a-GSM1925048.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g31060_col_a-GSM1925048.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g31060_col_a-GSM1925048.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g31060_colamp_a-GSM1925047.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g31060_colamp_a-GSM1925047.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g31060_colamp_a-GSM1925047.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g31060_colamp_a-GSM1925047.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g31060_colamp_a-GSM1925047.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At4g32800_colamp_a-GSM1925049.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At4g32800_colamp_a-GSM1925049.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At4g32800_colamp_a-GSM1925049.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At4g32800_colamp_a-GSM1925049.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At4g32800_colamp_a-GSM1925049.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At5g18450_col_a-GSM1925050.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At5g18450_col_a-GSM1925050.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At5g18450_col_a-GSM1925050.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At5g18450_col_a-GSM1925050.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At5g18450_col_a-GSM1925050.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At5g65130_col_a-GSM1925052.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At5g65130_col_a-GSM1925052.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At5g65130_col_a-GSM1925052.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At5g65130_col_a-GSM1925052.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At5g65130_col_a-GSM1925052.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At5g65130_colamp_a-GSM1925051.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At5g65130_colamp_a-GSM1925051.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At5g65130_colamp_a-GSM1925051.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At5g65130_colamp_a-GSM1925051.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At5g65130_colamp_a-GSM1925051.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.At5g67000_col_a-GSM1925053.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.At5g67000_col_a-GSM1925053.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.At5g67000_col_a-GSM1925053.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.At5g67000_col_a-GSM1925053.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.At5g67000_col_a-GSM1925053.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF1_col_a-GSM1925055.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF1_col_a-GSM1925055.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF1_col_a-GSM1925055.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF1_col_a-GSM1925055.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF1_col_a-GSM1925055.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF1_colamp_a-GSM1925054.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF1_colamp_a-GSM1925054.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF1_colamp_a-GSM1925054.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF1_colamp_a-GSM1925054.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF1_colamp_a-GSM1925054.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF2_col_a-GSM1925057.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF2_col_a-GSM1925057.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF2_col_a-GSM1925057.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF2_col_a-GSM1925057.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF2_col_a-GSM1925057.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF2_colamp_a-GSM1925056.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF2_colamp_a-GSM1925056.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF2_colamp_a-GSM1925056.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF2_colamp_a-GSM1925056.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF2_colamp_a-GSM1925056.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF3_col_a-GSM1925059.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF3_col_a-GSM1925059.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF3_col_a-GSM1925059.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF3_col_a-GSM1925059.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF3_col_a-GSM1925059.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF3_colamp_a-GSM1925058.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF3_colamp_a-GSM1925058.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF3_colamp_a-GSM1925058.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF3_colamp_a-GSM1925058.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF3_colamp_a-GSM1925058.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF4_col_a-GSM1925061.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF4_col_a-GSM1925061.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF4_col_a-GSM1925061.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF4_col_a-GSM1925061.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF4_col_a-GSM1925061.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CBF4_colamp_a-GSM1925060.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CBF4_colamp_a-GSM1925060.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CBF4_colamp_a-GSM1925060.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CBF4_colamp_a-GSM1925060.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CBF4_colamp_a-GSM1925060.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CEJ1_col_a-GSM1925063.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CEJ1_col_a-GSM1925063.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CEJ1_col_a-GSM1925063.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CEJ1_col_a-GSM1925063.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CEJ1_col_a-GSM1925063.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CEJ1_colamp_a-GSM1925062.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CEJ1_colamp_a-GSM1925062.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CEJ1_colamp_a-GSM1925062.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CEJ1_colamp_a-GSM1925062.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CEJ1_colamp_a-GSM1925062.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CRF10_col100_a-GSM1925064.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CRF10_col100_a-GSM1925064.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CRF10_col100_a-GSM1925064.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CRF10_col100_a-GSM1925064.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CRF10_col100_a-GSM1925064.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CRF10_colamp_a-GSM1925065.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CRF10_colamp_a-GSM1925065.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CRF10_colamp_a-GSM1925065.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CRF10_colamp_a-GSM1925065.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CRF10_colamp_a-GSM1925065.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CRF4_col_a-GSM1925067.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CRF4_col_a-GSM1925067.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CRF4_col_a-GSM1925067.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CRF4_col_a-GSM1925067.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CRF4_col_a-GSM1925067.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.CRF4_colamp_a-GSM1925066.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.CRF4_colamp_a-GSM1925066.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.CRF4_colamp_a-GSM1925066.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.CRF4_colamp_a-GSM1925066.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.CRF4_colamp_a-GSM1925066.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DDF1_col_a-GSM1925069.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DDF1_col_a-GSM1925069.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DDF1_col_a-GSM1925069.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DDF1_col_a-GSM1925069.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DDF1_col_a-GSM1925069.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DDF1_colamp_a-GSM1925068.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DDF1_colamp_a-GSM1925068.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DDF1_colamp_a-GSM1925068.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DDF1_colamp_a-GSM1925068.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DDF1_colamp_a-GSM1925068.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DDF2_col_a-GSM1925070.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DDF2_col_a-GSM1925070.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DDF2_col_a-GSM1925070.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DDF2_col_a-GSM1925070.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DDF2_col_a-GSM1925070.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR2_col_a-GSM1925072.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR2_col_a-GSM1925072.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR2_col_a-GSM1925072.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR2_col_a-GSM1925072.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR2_col_a-GSM1925072.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR2_colamp_a-GSM1925071.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR2_colamp_a-GSM1925071.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR2_colamp_a-GSM1925071.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR2_colamp_a-GSM1925071.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR2_colamp_a-GSM1925071.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR3_col_a-GSM1925074.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR3_col_a-GSM1925074.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR3_col_a-GSM1925074.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR3_col_a-GSM1925074.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR3_col_a-GSM1925074.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR3_colamp_a-GSM1925073.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR3_colamp_a-GSM1925073.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR3_colamp_a-GSM1925073.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR3_colamp_a-GSM1925073.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR3_colamp_a-GSM1925073.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR5_col_a-GSM1925076.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR5_col_a-GSM1925076.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR5_col_a-GSM1925076.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR5_col_a-GSM1925076.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR5_col_a-GSM1925076.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DEAR5_colamp_a-GSM1925075.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DEAR5_colamp_a-GSM1925075.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DEAR5_colamp_a-GSM1925075.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DEAR5_colamp_a-GSM1925075.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DEAR5_colamp_a-GSM1925075.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DREB19_col_a-GSM1925078.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DREB19_col_a-GSM1925078.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DREB19_col_a-GSM1925078.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DREB19_col_a-GSM1925078.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DREB19_col_a-GSM1925078.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DREB19_colamp_a-GSM1925077.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DREB19_colamp_a-GSM1925077.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DREB19_colamp_a-GSM1925077.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DREB19_colamp_a-GSM1925077.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DREB19_colamp_a-GSM1925077.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DREB26_col_a-GSM1925081.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DREB26_col_a-GSM1925081.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DREB26_col_a-GSM1925081.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DREB26_col_a-GSM1925081.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DREB26_col_a-GSM1925081.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DREB2_col_a-GSM1925080.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DREB2_col_a-GSM1925080.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DREB2_col_a-GSM1925080.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DREB2_col_a-GSM1925080.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DREB2_col_a-GSM1925080.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.DREB2_colamp_a-GSM1925079.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.DREB2_colamp_a-GSM1925079.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.DREB2_colamp_a-GSM1925079.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.DREB2_colamp_a-GSM1925079.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.DREB2_colamp_a-GSM1925079.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF104_col_a-GSM1925087.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF104_col_a-GSM1925087.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF104_col_a-GSM1925087.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF104_col_a-GSM1925087.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF104_col_a-GSM1925087.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF104_colamp_a-GSM1925086.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF104_colamp_a-GSM1925086.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF104_colamp_a-GSM1925086.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF104_colamp_a-GSM1925086.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF104_colamp_a-GSM1925086.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF105_colamp_a-GSM1925088.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF105_colamp_a-GSM1925088.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF105_colamp_a-GSM1925088.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF105_colamp_a-GSM1925088.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF105_colamp_a-GSM1925088.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF10_col_a-GSM1925085.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF10_col_a-GSM1925085.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF10_col_a-GSM1925085.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF10_col_a-GSM1925085.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF10_col_a-GSM1925085.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF10_colamp_a-GSM1925084.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF10_colamp_a-GSM1925084.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF10_colamp_a-GSM1925084.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF10_colamp_a-GSM1925084.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF10_colamp_a-GSM1925084.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF115_col_a-GSM1925092.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF115_col_a-GSM1925092.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF115_col_a-GSM1925092.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF115_col_a-GSM1925092.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF115_col_a-GSM1925092.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF115_colamp_a-GSM1925091.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF115_colamp_a-GSM1925091.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF115_colamp_a-GSM1925091.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF115_colamp_a-GSM1925091.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF115_colamp_a-GSM1925091.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF11_colamp_a-GSM1925089.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF11_colamp_a-GSM1925089.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF11_colamp_a-GSM1925089.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF11_colamp_a-GSM1925089.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF11_colamp_a-GSM1925089.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF11_col_b-GSM1925090.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF11_col_b-GSM1925090.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF11_col_b-GSM1925090.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF11_col_b-GSM1925090.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF11_col_b-GSM1925090.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF13_colamp_a-GSM1925093.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF13_colamp_a-GSM1925093.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF13_colamp_a-GSM1925093.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF13_colamp_a-GSM1925093.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF13_colamp_a-GSM1925093.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF13_col_b-GSM1925094.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF13_col_b-GSM1925094.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF13_col_b-GSM1925094.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF13_col_b-GSM1925094.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF13_col_b-GSM1925094.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF15_colamp_a-GSM1925095.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF15_colamp_a-GSM1925095.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF15_colamp_a-GSM1925095.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF15_colamp_a-GSM1925095.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF15_colamp_a-GSM1925095.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF1_col_a-GSM1925083.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF1_col_a-GSM1925083.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF1_col_a-GSM1925083.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF1_col_a-GSM1925083.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF1_col_a-GSM1925083.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF1_colamp_a-GSM1925082.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF1_colamp_a-GSM1925082.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF1_colamp_a-GSM1925082.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF1_colamp_a-GSM1925082.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF1_colamp_a-GSM1925082.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF2_col_a-GSM1925097.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF2_col_a-GSM1925097.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF2_col_a-GSM1925097.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF2_col_a-GSM1925097.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF2_col_a-GSM1925097.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF2_colamp_a-GSM1925096.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF2_colamp_a-GSM1925096.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF2_colamp_a-GSM1925096.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF2_colamp_a-GSM1925096.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF2_colamp_a-GSM1925096.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF3_col_a-GSM1925099.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF3_col_a-GSM1925099.50mers.TAIR10.unique.pseudoRep1_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF3_col_a-GSM1925099.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF3_col_a-GSM1925099.50mers.TAIR10.unique.pseudoRep2_VS_control_none.beads_col_v3a-GSM1924998.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF3_col_a-GSM1925099.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR
/oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples AP2EREBP_tnt.ERF3_colamp_a-GSM1925098.50mers.TAIR10.unique.pseudoRep1-SPP-300K/AP2EREBP_tnt.ERF3_colamp_a-GSM1925098.50mers.TAIR10.unique.pseudoRep1_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep1.narrowPeak.gz AP2EREBP_tnt.ERF3_colamp_a-GSM1925098.50mers.TAIR10.unique.pseudoRep2-SPP-300K/AP2EREBP_tnt.ERF3_colamp_a-GSM1925098.50mers.TAIR10.unique.pseudoRep2_VS_control_tnt-pixhalo_colamp_v3a-GSM1924999.50mers.TAIR10.unique.pseudoRep2.narrowPeak.gz --input-file-type narrowPeak --output-file IDR-AP2EREBP_tnt.ERF3_colamp_a-GSM1925098.pseudoreps --rank signal.value --soft-idr-threshold 0.05 --plot --use-best-multisummit-IDR