Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 19994)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 41721)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-358	-8.262e+02	0.0000	3191.0	15.96%	2344.7	5.62%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-357	-8.225e+02	0.0000	3183.0	15.92%	2342.0	5.62%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-328	-7.560e+02	0.0000	2854.0	14.27%	2047.2	4.91%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-316	-7.294e+02	0.0000	4969.0	24.84%	5170.9	12.40%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-307	-7.076e+02	0.0000	2146.0	10.73%	1270.7	3.05%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-300	-6.915e+02	0.0000	4052.0	20.26%	3869.2	9.28%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-286	-6.591e+02	0.0000	5399.0	27.00%	6092.6	14.61%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-236	-5.449e+02	0.0000	4380.0	21.90%	4826.2	11.57%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-193	-4.467e+02	0.0000	3898.0	19.49%	4397.2	10.54%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-181	-4.179e+02	0.0000	2619.0	13.10%	2519.1	6.04%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-179	-4.125e+02	0.0000	2716.0	13.58%	2678.7	6.42%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-176	-4.059e+02	0.0000	5468.0	27.34%	7222.9	17.32%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-174	-4.016e+02	0.0000	2019.0	10.10%	1712.7	4.11%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-172	-3.972e+02	0.0000	3094.0	15.47%	3300.2	7.91%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-168	-3.878e+02	0.0000	4399.0	22.00%	5457.0	13.09%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-165	-3.799e+02	0.0000	1244.0	6.22%	771.6	1.85%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-156	-3.614e+02	0.0000	1076.0	5.38%	611.2	1.47%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-150	-3.458e+02	0.0000	2739.0	13.69%	2926.7	7.02%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-148	-3.419e+02	0.0000	4807.0	24.04%	6368.5	15.27%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-147	-3.390e+02	0.0000	3539.0	17.70%	4227.7	10.14%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-146	-3.374e+02	0.0000	730.0	3.65%	289.0	0.69%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-139	-3.204e+02	0.0000	1294.0	6.47%	943.8	2.26%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-137	-3.156e+02	0.0000	349.0	1.75%	25.1	0.06%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-134	-3.104e+02	0.0000	3721.0	18.61%	4653.0	11.16%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-131	-3.034e+02	0.0000	4922.0	24.61%	6767.5	16.23%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-131	-3.032e+02	0.0000	3734.0	18.67%	4706.3	11.29%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-130	-3.013e+02	0.0000	2437.0	12.19%	2615.0	6.27%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-130	-2.996e+02	0.0000	3966.0	19.83%	5117.1	12.27%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-129	-2.981e+02	0.0000	502.0	2.51%	133.2	0.32%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-127	-2.943e+02	0.0000	869.0	4.35%	488.0	1.17%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-126	-2.911e+02	0.0000	4079.0	20.39%	5352.3	12.83%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-124	-2.870e+02	0.0000	3929.0	19.65%	5114.3	12.26%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-123	-2.852e+02	0.0000	1085.0	5.42%	755.7	1.81%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-120	-2.766e+02	0.0000	527.0	2.63%	173.8	0.42%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-118	-2.734e+02	0.0000	2761.0	13.80%	3229.3	7.74%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-117	-2.712e+02	0.0000	986.0	4.93%	662.3	1.59%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-115	-2.653e+02	0.0000	960.0	4.80%	642.3	1.54%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-111	-2.563e+02	0.0000	2646.0	13.23%	3113.2	7.47%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-110	-2.551e+02	0.0000	552.0	2.76%	218.2	0.52%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-108	-2.503e+02	0.0000	6099.0	30.50%	9238.0	22.15%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-107	-2.483e+02	0.0000	2962.0	14.81%	3664.6	8.79%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-104	-2.397e+02	0.0000	2640.0	13.20%	3173.3	7.61%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-100	-2.313e+02	0.0000	402.0	2.01%	113.2	0.27%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-99	-2.286e+02	0.0000	1282.0	6.41%	1142.1	2.74%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-85	-1.965e+02	0.0000	2216.0	11.08%	2671.9	6.41%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-83	-1.928e+02	0.0000	1412.0	7.06%	1435.0	3.44%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-78	-1.806e+02	0.0000	3884.0	19.42%	5624.8	13.49%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-72	-1.672e+02	0.0000	1867.0	9.34%	2236.0	5.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-72	-1.669e+02	0.0000	1765.0	8.82%	2074.0	4.97%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-72	-1.669e+02	0.0000	909.0	4.54%	794.1	1.90%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-70	-1.633e+02	0.0000	1941.0	9.71%	2372.5	5.69%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-65	-1.501e+02	0.0000	1408.0	7.04%	1580.7	3.79%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-64	-1.474e+02	0.0000	340.0	1.70%	146.2	0.35%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-63	-1.468e+02	0.0000	1437.0	7.18%	1638.1	3.93%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-63	-1.455e+02	0.0000	545.0	2.73%	373.3	0.90%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-60	-1.401e+02	0.0000	946.0	4.73%	922.7	2.21%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-56	-1.300e+02	0.0000	1064.0	5.32%	1129.9	2.71%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-54	-1.262e+02	0.0000	1816.0	9.08%	2345.0	5.62%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-54	-1.252e+02	0.0000	447.0	2.23%	295.1	0.71%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-53	-1.239e+02	0.0000	2462.0	12.31%	3464.0	8.31%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-53	-1.235e+02	0.0000	1512.0	7.56%	1858.9	4.46%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-51	-1.187e+02	0.0000	1055.0	5.27%	1157.6	2.78%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-51	-1.181e+02	0.0000	1009.0	5.04%	1090.0	2.61%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-51	-1.180e+02	0.0000	2282.0	11.41%	3186.1	7.64%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-50	-1.171e+02	0.0000	932.0	4.66%	977.7	2.34%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-50	-1.166e+02	0.0000	1048.0	5.24%	1154.1	2.77%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-50	-1.156e+02	0.0000	1377.0	6.88%	1676.2	4.02%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-48	-1.110e+02	0.0000	2164.0	10.82%	3024.7	7.25%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-45	-1.045e+02	0.0000	799.0	4.00%	823.1	1.97%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-43	-9.924e+01	0.0000	1315.0	6.58%	1653.2	3.96%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-42	-9.728e+01	0.0000	2873.0	14.37%	4384.4	10.51%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-42	-9.680e+01	0.0000	956.0	4.78%	1090.7	2.62%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-41	-9.656e+01	0.0000	640.0	3.20%	618.3	1.48%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-41	-9.603e+01	0.0000	1164.0	5.82%	1423.2	3.41%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-40	-9.399e+01	0.0000	860.0	4.30%	953.6	2.29%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-40	-9.356e+01	0.0000	441.0	2.21%	354.6	0.85%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-34	-8.051e+01	0.0000	531.0	2.66%	512.8	1.23%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-34	-7.932e+01	0.0000	2211.0	11.05%	3326.8	7.98%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-34	-7.864e+01	0.0000	303.0	1.52%	214.0	0.51%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-33	-7.813e+01	0.0000	1587.0	7.94%	2231.2	5.35%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-33	-7.748e+01	0.0000	1142.0	5.71%	1479.7	3.55%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-31	-7.269e+01	0.0000	763.0	3.82%	889.1	2.13%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-31	-7.262e+01	0.0000	382.0	1.91%	328.1	0.79%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-30	-6.972e+01	0.0000	394.0	1.97%	353.0	0.85%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-28	-6.675e+01	0.0000	1591.0	7.95%	2315.0	5.55%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-28	-6.598e+01	0.0000	1216.0	6.08%	1669.4	4.00%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-28	-6.510e+01	0.0000	409.0	2.04%	386.1	0.93%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-27	-6.398e+01	0.0000	1860.0	9.30%	2815.2	6.75%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-26	-6.131e+01	0.0000	1298.0	6.49%	1840.9	4.41%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-23	-5.520e+01	0.0000	1534.0	7.67%	2300.8	5.52%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-23	-5.510e+01	0.0000	2036.0	10.18%	3211.6	7.70%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-23	-5.461e+01	0.0000	825.0	4.12%	1076.8	2.58%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-22	-5.179e+01	0.0000	1846.0	9.23%	2893.9	6.94%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-22	-5.142e+01	0.0000	2026.0	10.13%	3227.1	7.74%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-22	-5.076e+01	0.0000	1890.0	9.45%	2983.5	7.15%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-21	-5.055e+01	0.0000	2332.0	11.66%	3804.7	9.12%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-21	-4.999e+01	0.0000	320.0	1.60%	306.7	0.74%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-20	-4.818e+01	0.0000	376.0	1.88%	393.0	0.94%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-19	-4.548e+01	0.0000	4061.0	20.30%	7183.4	17.23%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-19	-4.412e+01	0.0000	3122.0	15.61%	5379.6	12.90%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-18	-4.288e+01	0.0000	499.0	2.50%	604.6	1.45%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-14	-3.451e+01	0.0000	3810.0	19.05%	6859.3	16.45%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-14	-3.451e+01	0.0000	1593.0	7.96%	2595.2	6.22%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-13	-3.123e+01	0.0000	1336.0	6.68%	2153.3	5.16%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-13	-3.098e+01	0.0000	1696.0	8.48%	2827.8	6.78%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-12	-2.988e+01	0.0000	2438.0	12.19%	4256.2	10.21%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-12	-2.957e+01	0.0000	498.0	2.49%	672.4	1.61%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-12	-2.911e+01	0.0000	1571.0	7.85%	2614.1	6.27%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-12	-2.864e+01	0.0000	18592.0	92.96%	38068.0	91.29%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-12	-2.805e+01	0.0000	1671.0	8.36%	2815.6	6.75%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-11	-2.755e+01	0.0000	1212.0	6.06%	1963.0	4.71%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-11	-2.693e+01	0.0000	1873.0	9.37%	3213.6	7.71%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-11	-2.630e+01	0.0000	662.0	3.31%	977.3	2.34%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-11	-2.625e+01	0.0000	2716.0	13.58%	4851.9	11.63%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-11	-2.587e+01	0.0000	638.0	3.19%	938.5	2.25%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-10	-2.482e+01	0.0000	1201.0	6.00%	1971.8	4.73%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-10	-2.454e+01	0.0000	476.0	2.38%	666.5	1.60%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-10	-2.392e+01	0.0000	6880.0	34.40%	13249.5	31.77%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-9	-2.291e+01	0.0000	423.0	2.11%	586.7	1.41%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-9	-2.285e+01	0.0000	2639.0	13.20%	4758.6	11.41%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-9	-2.262e+01	0.0000	592.0	2.96%	882.1	2.12%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-9	-2.148e+01	0.0000	1664.0	8.32%	2890.0	6.93%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-9	-2.095e+01	0.0000	487.0	2.44%	710.8	1.70%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-8	-1.995e+01	0.0000	536.0	2.68%	804.3	1.93%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-8	-1.988e+01	0.0000	552.0	2.76%	833.4	2.00%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-8	-1.912e+01	0.0000	720.0	3.60%	1143.7	2.74%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-7	-1.836e+01	0.0000	185.0	0.92%	218.2	0.52%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-7	-1.819e+01	0.0000	1704.0	8.52%	3016.6	7.23%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-7	-1.810e+01	0.0000	487.0	2.44%	732.1	1.76%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-7	-1.805e+01	0.0000	1836.0	9.18%	3274.8	7.85%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-7	-1.679e+01	0.0000	1809.0	9.04%	3243.5	7.78%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-7	-1.640e+01	0.0000	1307.0	6.54%	2279.6	5.47%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-6	-1.603e+01	0.0000	385.0	1.93%	568.6	1.36%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-6	-1.591e+01	0.0000	1239.0	6.19%	2156.9	5.17%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-6	-1.580e+01	0.0000	2703.0	13.51%	5021.7	12.04%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-6	-1.566e+01	0.0000	234.0	1.17%	311.8	0.75%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-6	-1.565e+01	0.0000	296.0	1.48%	416.5	1.00%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-6	-1.547e+01	0.0000	575.0	2.88%	914.6	2.19%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-6	-1.527e+01	0.0000	2030.0	10.15%	3703.1	8.88%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-6	-1.503e+01	0.0000	1940.0	9.70%	3531.4	8.47%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-6	-1.465e+01	0.0000	163.0	0.81%	200.4	0.48%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-6	-1.460e+01	0.0000	521.0	2.60%	824.9	1.98%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-6	-1.456e+01	0.0000	2423.0	12.12%	4493.5	10.78%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-6	-1.448e+01	0.0000	6056.0	30.28%	11829.2	28.37%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-6	-1.443e+01	0.0000	67.0	0.34%	57.4	0.14%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-6	-1.435e+01	0.0000	2072.0	10.36%	3804.8	9.12%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-6	-1.417e+01	0.0000	22.0	0.11%	6.5	0.02%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-6	-1.414e+01	0.0000	597.0	2.99%	968.7	2.32%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-6	-1.407e+01	0.0000	2299.0	11.49%	4258.4	10.21%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-6	-1.406e+01	0.0000	1585.0	7.92%	2855.9	6.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-6	-1.387e+01	0.0000	2262.0	11.31%	4189.8	10.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-5	-1.357e+01	0.0000	2482.0	12.41%	4632.3	11.11%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-5	-1.349e+01	0.0000	453.0	2.27%	711.0	1.71%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-5	-1.285e+01	0.0000	385.0	1.93%	594.4	1.43%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-5	-1.264e+01	0.0000	2021.0	10.11%	3739.9	8.97%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e-5	-1.262e+01	0.0000	9932.0	49.66%	19900.6	47.72%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-5	-1.259e+01	0.0000	1383.0	6.92%	2488.5	5.97%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-5	-1.247e+01	0.0000	4012.0	20.06%	7732.4	18.54%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-5	-1.227e+01	0.0000	858.0	4.29%	1481.0	3.55%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-5	-1.214e+01	0.0000	2451.0	12.26%	4604.4	11.04%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-5	-1.210e+01	0.0000	907.0	4.54%	1577.7	3.78%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-5	-1.204e+01	0.0000	75.0	0.38%	75.4	0.18%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-5	-1.181e+01	0.0000	569.0	2.84%	942.7	2.26%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-5	-1.179e+01	0.0000	367.0	1.84%	571.9	1.37%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-4	-1.107e+01	0.0001	537.0	2.69%	891.8	2.14%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-4	-1.075e+01	0.0001	3202.0	16.01%	6147.4	14.74%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-4	-1.071e+01	0.0001	122.0	0.61%	153.8	0.37%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-1.064e+01	0.0001	995.0	4.98%	1769.0	4.24%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-4	-1.036e+01	0.0002	2671.0	13.36%	5090.9	12.21%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-4	-1.025e+01	0.0002	2335.0	11.68%	4420.7	10.60%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-4	-1.019e+01	0.0002	11498.0	57.49%	23269.0	55.80%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-4	-1.017e+01	0.0002	852.0	4.26%	1501.6	3.60%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-4	-1.003e+01	0.0002	239.0	1.20%	357.0	0.86%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-4	-9.967e+00	0.0002	427.0	2.14%	699.4	1.68%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-4	-9.956e+00	0.0003	1134.0	5.67%	2051.2	4.92%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-4	-9.865e+00	0.0003	1746.0	8.73%	3257.1	7.81%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-4	-9.811e+00	0.0003	835.0	4.17%	1474.5	3.54%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-4	-9.662e+00	0.0003	727.0	3.64%	1270.0	3.05%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-4	-9.661e+00	0.0003	3305.0	16.53%	6388.3	15.32%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-4	-9.658e+00	0.0003	1876.0	9.38%	3520.2	8.44%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-4	-9.633e+00	0.0003	461.0	2.31%	766.4	1.84%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-4	-9.619e+00	0.0003	850.0	4.25%	1506.8	3.61%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-4	-9.543e+00	0.0004	2346.0	11.73%	4461.1	10.70%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-4	-9.381e+00	0.0004	526.0	2.63%	891.4	2.14%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-4	-9.297e+00	0.0005	812.0	4.06%	1438.0	3.45%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-4	-9.222e+00	0.0005	3301.0	16.50%	6394.8	15.33%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-3	-9.108e+00	0.0005	2674.0	13.37%	5132.3	12.31%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-3	-9.107e+00	0.0005	2481.0	12.40%	4744.5	11.38%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-3	-8.998e+00	0.0006	151.0	0.76%	211.3	0.51%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-3	-8.942e+00	0.0006	728.0	3.64%	1282.9	3.08%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-3	-8.610e+00	0.0009	424.0	2.12%	709.5	1.70%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-3	-8.604e+00	0.0009	139.0	0.69%	193.7	0.46%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-3	-8.560e+00	0.0009	833.0	4.17%	1491.4	3.58%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-3	-8.480e+00	0.0010	2938.0	14.69%	5684.0	13.63%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-3	-8.292e+00	0.0012	1413.0	7.07%	2634.4	6.32%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-3	-8.249e+00	0.0012	254.0	1.27%	399.4	0.96%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-3	-7.904e+00	0.0017	405.0	2.02%	682.7	1.64%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-7.882e+00	0.0018	240.0	1.20%	377.2	0.90%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-3	-7.788e+00	0.0019	339.0	1.70%	560.6	1.34%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-3	-7.774e+00	0.0019	1790.0	8.95%	3397.4	8.15%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.725e+00	0.0020	174.0	0.87%	260.7	0.63%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-3	-7.717e+00	0.0020	2539.0	12.70%	4903.4	11.76%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-3	-7.700e+00	0.0021	1887.0	9.44%	3593.4	8.62%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-3	-7.659e+00	0.0021	214.0	1.07%	332.5	0.80%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-7.591e+00	0.0023	543.0	2.71%	948.5	2.27%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-3	-7.430e+00	0.0027	1182.0	5.91%	2197.8	5.27%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-3	-7.394e+00	0.0027	1462.0	7.31%	2753.2	6.60%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-3	-7.393e+00	0.0027	1006.0	5.03%	1851.9	4.44%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-3	-7.378e+00	0.0028	222.0	1.11%	349.7	0.84%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-3	-7.286e+00	0.0030	860.0	4.30%	1567.8	3.76%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-3	-7.233e+00	0.0032	1992.0	9.96%	3817.4	9.15%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-7.181e+00	0.0033	1330.0	6.65%	2496.8	5.99%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e-3	-7.116e+00	0.0035	868.0	4.34%	1586.4	3.80%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-3	-7.071e+00	0.0037	350.0	1.75%	589.3	1.41%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-3	-6.984e+00	0.0040	1031.0	5.16%	1909.0	4.58%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-3	-6.949e+00	0.0041	246.0	1.23%	397.2	0.95%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-2	-6.891e+00	0.0043	832.0	4.16%	1520.9	3.65%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-2	-6.880e+00	0.0044	232.0	1.16%	372.3	0.89%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-6.828e+00	0.0046	1132.0	5.66%	2112.4	5.07%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-2	-6.813e+00	0.0046	327.0	1.64%	549.4	1.32%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-2	-6.803e+00	0.0046	1285.0	6.42%	2416.7	5.80%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-2	-6.789e+00	0.0047	372.0	1.86%	635.0	1.52%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-6.715e+00	0.0050	524.0	2.62%	925.6	2.22%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.694e+00	0.0051	1648.0	8.24%	3143.8	7.54%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-2	-6.657e+00	0.0053	2753.0	13.76%	5372.2	12.88%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e-2	-6.576e+00	0.0057	476.0	2.38%	835.1	2.00%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.557e+00	0.0058	825.0	4.12%	1513.5	3.63%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-6.551e+00	0.0058	1593.0	7.96%	3037.4	7.28%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-2	-6.544e+00	0.0058	678.0	3.39%	1226.5	2.94%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-2	-6.460e+00	0.0063	171.0	0.85%	265.8	0.64%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-2	-6.447e+00	0.0063	1287.0	6.44%	2429.9	5.83%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-2	-6.447e+00	0.0063	2223.0	11.12%	4307.5	10.33%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-6.418e+00	0.0065	158.0	0.79%	242.4	0.58%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-2	-6.404e+00	0.0065	393.0	1.97%	679.9	1.63%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-2	-6.342e+00	0.0069	601.0	3.00%	1080.3	2.59%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-2	-6.316e+00	0.0071	516.0	2.58%	916.4	2.20%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-2	-6.215e+00	0.0078	6971.0	34.86%	14044.2	33.68%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-2	-6.088e+00	0.0088	691.0	3.45%	1260.6	3.02%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-2	-5.902e+00	0.0105	1591.0	7.95%	3052.8	7.32%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-2	-5.892e+00	0.0106	84.0	0.42%	116.5	0.28%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-5.881e+00	0.0107	588.0	2.94%	1063.8	2.55%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-2	-5.862e+00	0.0108	4576.0	22.88%	9128.0	21.89%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-2	-5.819e+00	0.0113	1513.0	7.56%	2898.5	6.95%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-5.796e+00	0.0115	11687.0	58.44%	23881.7	57.27%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-2	-5.778e+00	0.0117	720.0	3.60%	1323.2	3.17%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-2	-5.726e+00	0.0122	936.0	4.68%	1751.0	4.20%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-2	-5.707e+00	0.0124	242.0	1.21%	403.3	0.97%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-2	-5.659e+00	0.0130	1730.0	8.65%	3339.0	8.01%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-2	-5.637e+00	0.0132	2602.0	13.01%	5104.9	12.24%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-2	-5.590e+00	0.0138	576.0	2.88%	1045.7	2.51%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-2	-5.551e+00	0.0143	533.0	2.67%	962.0	2.31%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e-2	-5.543e+00	0.0143	663.0	3.31%	1216.6	2.92%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-2	-5.503e+00	0.0148	408.0	2.04%	721.7	1.73%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e-2	-5.455e+00	0.0155	313.0	1.57%	540.8	1.30%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-2	-5.392e+00	0.0165	639.0	3.19%	1172.6	2.81%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-2	-5.369e+00	0.0168	1920.0	9.60%	3732.5	8.95%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.303e+00	0.0179	837.0	4.18%	1564.7	3.75%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-2	-5.262e+00	0.0185	2251.0	11.25%	4406.5	10.57%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-2	-5.239e+00	0.0189	3718.0	18.59%	7398.0	17.74%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-2	-5.190e+00	0.0198	1698.0	8.49%	3291.0	7.89%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e-2	-5.091e+00	0.0217	2394.0	11.97%	4703.6	11.28%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-2	-5.038e+00	0.0228	2597.0	12.98%	5118.8	12.27%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-2	-5.038e+00	0.0228	3203.0	16.01%	6354.4	15.24%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-4.975e+00	0.0241	346.0	1.73%	610.7	1.46%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-4.967e+00	0.0242	553.0	2.77%	1012.7	2.43%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-2	-4.954e+00	0.0245	751.0	3.75%	1402.1	3.36%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-2	-4.904e+00	0.0256	198.0	0.99%	330.8	0.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-2	-4.827e+00	0.0275	258.0	1.29%	444.4	1.07%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-2	-4.712e+00	0.0308	126.0	0.63%	199.7	0.48%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-4.694e+00	0.0313	366.0	1.83%	653.7	1.57%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-4.652e+00	0.0325	466.0	2.33%	848.3	2.03%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-2	-4.650e+00	0.0325	1139.0	5.70%	2183.5	5.24%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e-2	-4.650e+00	0.0325	89.0	0.45%	133.5	0.32%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e-2	-4.645e+00	0.0325	669.0	3.35%	1248.0	2.99%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-2	-4.608e+00	0.0334	442.0	2.21%	802.4	1.92%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-4.560e+00	0.0350	234.0	1.17%	402.6	0.97%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-1	-4.527e+00	0.0360	760.0	3.80%	1430.3	3.43%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-1	-4.499e+00	0.0369	1881.0	9.40%	3685.5	8.84%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-4.349e+00	0.0427	398.0	1.99%	721.5	1.73%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-1	-4.338e+00	0.0430	492.0	2.46%	905.2	2.17%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-1	-4.314e+00	0.0439	62.0	0.31%	88.4	0.21%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-4.299e+00	0.0444	328.0	1.64%	586.0	1.41%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-4.293e+00	0.0445	890.0	4.45%	1695.2	4.06%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-4.273e+00	0.0452	19989.0	99.94%	41654.9	99.89%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-4.251e+00	0.0461	19314.0	96.57%	40123.0	96.21%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-4.237e+00	0.0466	299.0	1.49%	531.1	1.27%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-4.232e+00	0.0466	2386.0	11.93%	4724.0	11.33%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-1	-4.222e+00	0.0470	1980.0	9.90%	3897.3	9.35%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-4.185e+00	0.0486	19966.0	99.83%	41593.0	99.74%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-1	-4.177e+00	0.0488	1088.0	5.44%	2095.4	5.02%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-4.172e+00	0.0489	162.0	0.81%	271.9	0.65%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-1	-4.169e+00	0.0489	300.0	1.50%	534.0	1.28%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.166e+00	0.0489	1041.0	5.21%	2001.7	4.80%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-4.148e+00	0.0496	649.0	3.25%	1219.2	2.92%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e-1	-4.122e+00	0.0507	505.0	2.53%	935.3	2.24%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-1	-4.118e+00	0.0507	1104.0	5.52%	2129.4	5.11%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-1	-4.048e+00	0.0542	1943.0	9.71%	3829.8	9.18%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-1	-4.046e+00	0.0542	616.0	3.08%	1156.2	2.77%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-4.031e+00	0.0547	225.0	1.12%	392.5	0.94%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.994e+00	0.0566	348.0	1.74%	630.6	1.51%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e-1	-3.979e+00	0.0573	1148.0	5.74%	2222.1	5.33%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-3.902e+00	0.0617	118.0	0.59%	192.9	0.46%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.886e+00	0.0625	3568.0	17.84%	7160.4	17.17%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-1	-3.878e+00	0.0628	194.0	0.97%	335.7	0.80%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-1	-3.872e+00	0.0630	1028.0	5.14%	1984.7	4.76%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-3.845e+00	0.0644	1338.0	6.69%	2610.1	6.26%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-3.835e+00	0.0649	389.0	1.94%	713.3	1.71%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.824e+00	0.0654	575.0	2.88%	1080.5	2.59%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.743e+00	0.0707	2810.0	14.05%	5613.5	13.46%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.740e+00	0.0707	172.0	0.86%	295.2	0.71%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-1	-3.678e+00	0.0749	2864.0	14.32%	5727.4	13.73%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.674e+00	0.0750	3383.0	16.91%	6792.8	16.29%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-3.635e+00	0.0777	298.0	1.49%	539.6	1.29%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-3.623e+00	0.0784	167.0	0.83%	287.3	0.69%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-3.615e+00	0.0788	1231.0	6.16%	2402.7	5.76%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-3.606e+00	0.0792	525.0	2.62%	986.0	2.36%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-3.560e+00	0.0827	948.0	4.74%	1833.6	4.40%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e-1	-3.552e+00	0.0831	443.0	2.21%	825.0	1.98%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-3.508e+00	0.0866	143.0	0.71%	243.3	0.58%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e-1	-3.499e+00	0.0871	1018.0	5.09%	1976.8	4.74%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-1	-3.480e+00	0.0884	468.0	2.34%	876.4	2.10%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-3.475e+00	0.0887	2539.0	12.70%	5072.3	12.16%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e-1	-3.470e+00	0.0888	543.0	2.71%	1025.5	2.46%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-1	-3.457e+00	0.0897	8902.0	44.51%	18229.1	43.71%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-3.441e+00	0.0909	742.0	3.71%	1423.1	3.41%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.439e+00	0.0909	719.0	3.60%	1377.3	3.30%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-1	-3.434e+00	0.0909	195.0	0.97%	343.4	0.82%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.388e+00	0.0949	474.0	2.37%	890.6	2.14%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-1	-3.378e+00	0.0956	5147.0	25.74%	10446.4	25.05%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.376e+00	0.0956	2514.0	12.57%	5026.2	12.05%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-1	-3.366e+00	0.0962	508.0	2.54%	958.3	2.30%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-1	-3.342e+00	0.0982	262.0	1.31%	474.7	1.14%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.340e+00	0.0982	71.0	0.36%	111.6	0.27%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.338e+00	0.0982	431.0	2.15%	806.9	1.93%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-1	-3.299e+00	0.1016	2258.0	11.29%	4506.8	10.81%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-1	-3.198e+00	0.1120	1379.0	6.89%	2719.0	6.52%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-3.192e+00	0.1125	1200.0	6.00%	2355.3	5.65%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-1	-3.139e+00	0.1182	327.0	1.64%	605.4	1.45%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-1	-3.087e+00	0.1241	847.0	4.23%	1645.2	3.95%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-1	-3.080e+00	0.1246	1115.0	5.58%	2187.3	5.25%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-1	-3.070e+00	0.1255	1100.0	5.50%	2157.1	5.17%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-1	-3.070e+00	0.1255	2383.0	11.92%	4774.5	11.45%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-1	-3.067e+00	0.1255	385.0	1.93%	721.1	1.73%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-1	-3.052e+00	0.1267	43.0	0.21%	63.6	0.15%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-1	-3.012e+00	0.1315	3002.0	15.01%	6048.4	14.50%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-2.932e+00	0.1420	584.0	2.92%	1121.1	2.69%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-1	-2.932e+00	0.1420	3383.0	16.91%	6838.0	16.40%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.906e+00	0.1448	285.0	1.43%	527.1	1.26%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-1	-2.846e+00	0.1535	1236.0	6.18%	2442.3	5.86%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-2.839e+00	0.1541	2308.0	11.54%	4634.0	11.11%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e-1	-2.776e+00	0.1636	15.0	0.07%	17.3	0.04%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.722e+00	0.1722	1014.0	5.07%	1996.3	4.79%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.702e+00	0.1751	254.0	1.27%	470.8	1.13%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-1	-2.695e+00	0.1759	1224.0	6.12%	2424.4	5.81%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-2.643e+00	0.1847	371.0	1.85%	703.1	1.69%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-2.596e+00	0.1931	1319.0	6.59%	2622.3	6.29%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e-1	-2.573e+00	0.1971	277.0	1.39%	518.4	1.24%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.566e+00	0.1980	501.0	2.50%	965.2	2.31%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-2.530e+00	0.2046	961.0	4.81%	1896.2	4.55%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e-1	-2.517e+00	0.2067	406.0	2.03%	776.6	1.86%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e-1	-2.492e+00	0.2113	574.0	2.87%	1114.1	2.67%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-2.492e+00	0.2113	4060.0	20.30%	8265.5	19.82%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-2.480e+00	0.2126	275.0	1.38%	516.5	1.24%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-2.463e+00	0.2157	210.0	1.05%	388.1	0.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.425e+00	0.2234	1172.0	5.86%	2330.7	5.59%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-2.409e+00	0.2264	439.0	2.20%	845.8	2.03%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.399e+00	0.2281	261.0	1.31%	490.5	1.18%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-1	-2.395e+00	0.2285	569.0	2.84%	1107.7	2.66%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-2.367e+00	0.2343	72.0	0.36%	122.3	0.29%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-1	-2.350e+00	0.2376	1806.0	9.03%	3631.3	8.71%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.301e+00	0.2489	862.0	4.31%	1704.5	4.09%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.286e+00	0.2519	2180.0	10.90%	4404.0	10.56%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.278e+00	0.2532	236.0	1.18%	443.4	1.06%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-2.258e+00	0.2578	31.0	0.15%	47.6	0.11%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-2.228e+00	0.2650	740.0	3.70%	1459.6	3.50%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.218e+00	0.2668	38.0	0.19%	60.6	0.15%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.213e+00	0.2676	2044.0	10.22%	4128.8	9.90%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-2.184e+00	0.2747	571.0	2.85%	1118.7	2.68%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.177e+00	0.2758	98.0	0.49%	174.0	0.42%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-2.157e+00	0.2806	779.0	3.90%	1541.2	3.70%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-2.151e+00	0.2815	643.0	3.21%	1265.6	3.03%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-2.128e+00	0.2873	429.0	2.15%	833.0	2.00%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-2.095e+00	0.2964	428.0	2.14%	832.6	2.00%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-2.079e+00	0.3002	980.0	4.90%	1954.8	4.69%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.076e+00	0.3005	650.0	3.25%	1282.8	3.08%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-2.060e+00	0.3044	663.0	3.31%	1309.7	3.14%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-2.050e+00	0.3066	1064.0	5.32%	2127.7	5.10%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.049e+00	0.3066	1790.0	8.95%	3616.5	8.67%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-2.033e+00	0.3105	8657.0	43.29%	17850.7	42.81%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.019e+00	0.3138	2547.0	12.73%	5177.4	12.42%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.011e+00	0.3157	315.0	1.57%	607.7	1.46%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.990e+00	0.3214	544.0	2.72%	1070.0	2.57%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.946e+00	0.3352	1458.0	7.29%	2940.6	7.05%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.930e+00	0.3397	13703.0	68.52%	28395.0	68.09%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-1.925e+00	0.3407	710.0	3.55%	1410.9	3.38%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.923e+00	0.3407	2808.0	14.04%	5723.9	13.73%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.920e+00	0.3407	1159.0	5.79%	2328.2	5.58%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.895e+00	0.3482	3915.0	19.57%	8015.5	19.22%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.849e+00	0.3635	681.0	3.40%	1354.8	3.25%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.835e+00	0.3679	235.0	1.18%	451.7	1.08%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-1.834e+00	0.3679	325.0	1.62%	632.3	1.52%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.830e+00	0.3680	98.0	0.49%	179.2	0.43%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.821e+00	0.3705	842.0	4.21%	1684.2	4.04%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-1.753e+00	0.3953	23.0	0.11%	36.2	0.09%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.737e+00	0.4006	2012.0	10.06%	4094.8	9.82%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-1.687e+00	0.4204	834.0	4.17%	1675.0	4.02%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.685e+00	0.4204	853.0	4.26%	1713.4	4.11%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.678e+00	0.4219	241.0	1.21%	467.5	1.12%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.667e+00	0.4257	814.0	4.07%	1634.6	3.92%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.660e+00	0.4276	1551.0	7.75%	3149.8	7.55%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-1.659e+00	0.4276	2985.0	14.92%	6111.6	14.66%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.640e+00	0.4340	3802.0	19.01%	7805.7	18.72%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.637e+00	0.4343	1201.0	6.00%	2430.8	5.83%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.631e+00	0.4360	30.0	0.15%	50.6	0.12%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.611e+00	0.4435	4532.0	22.66%	9322.7	22.36%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.605e+00	0.4451	13927.0	69.64%	28899.7	69.30%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.596e+00	0.4484	1279.0	6.40%	2593.1	6.22%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.576e+00	0.4563	35.0	0.18%	60.2	0.14%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.551e+00	0.4667	9.0	0.04%	12.8	0.03%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.533e+00	0.4737	14.0	0.07%	21.8	0.05%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.530e+00	0.4743	759.0	3.79%	1528.7	3.67%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.519e+00	0.4781	62.0	0.31%	113.1	0.27%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.517e+00	0.4784	302.0	1.51%	596.0	1.43%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.492e+00	0.4892	1033.0	5.17%	2093.8	5.02%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.488e+00	0.4897	391.0	1.96%	777.4	1.86%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.485e+00	0.4903	1179.0	5.90%	2394.4	5.74%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.470e+00	0.4962	517.0	2.58%	1035.9	2.48%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.439e+00	0.5110	613.0	3.06%	1233.9	2.96%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.427e+00	0.5161	2515.0	12.57%	5159.8	12.37%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.425e+00	0.5161	4640.0	23.20%	9567.2	22.94%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.424e+00	0.5161	3246.0	16.23%	6674.3	16.00%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.421e+00	0.5161	3009.0	15.04%	6183.9	14.83%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.391e+00	0.5298	1384.0	6.92%	2823.1	6.77%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.378e+00	0.5356	141.0	0.70%	273.6	0.66%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.364e+00	0.5419	114.0	0.57%	219.0	0.53%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.349e+00	0.5486	408.0	2.04%	817.0	1.96%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.344e+00	0.5501	3958.0	19.79%	8160.8	19.57%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.335e+00	0.5541	417.0	2.08%	836.5	2.01%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.331e+00	0.5548	476.0	2.38%	957.9	2.30%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.303e+00	0.5696	1703.0	8.52%	3489.2	8.37%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.303e+00	0.5696	249.0	1.24%	494.8	1.19%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.296e+00	0.5710	145.0	0.73%	283.8	0.68%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.292e+00	0.5718	35.0	0.18%	63.8	0.15%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.292e+00	0.5718	266.0	1.33%	529.1	1.27%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.275e+00	0.5787	1136.0	5.68%	2319.5	5.56%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.273e+00	0.5790	162.0	0.81%	318.0	0.76%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.253e+00	0.5892	429.0	2.15%	864.5	2.07%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.239e+00	0.5960	223.0	1.11%	444.0	1.06%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-1.234e+00	0.5980	3203.0	16.01%	6605.7	15.84%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.222e+00	0.6036	848.0	4.24%	1728.7	4.15%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.205e+00	0.6126	687.0	3.44%	1397.8	3.35%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-1.204e+00	0.6126	4511.0	22.55%	9326.1	22.36%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.194e+00	0.6167	78.0	0.39%	150.5	0.36%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.186e+00	0.6205	1293.0	6.46%	2650.9	6.36%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.170e+00	0.6286	263.0	1.31%	527.1	1.26%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.154e+00	0.6379	229.0	1.15%	458.5	1.10%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-1.144e+00	0.6425	2307.0	11.54%	4755.5	11.40%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.132e+00	0.6491	1046.0	5.23%	2143.4	5.14%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.125e+00	0.6522	1905.0	9.53%	3923.7	9.41%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.120e+00	0.6538	2853.0	14.27%	5891.8	14.13%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.115e+00	0.6560	1158.0	5.79%	2376.5	5.70%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.111e+00	0.6573	176.0	0.88%	351.4	0.84%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.077e+00	0.6786	1046.0	5.23%	2147.1	5.15%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.066e+00	0.6846	421.0	2.10%	856.6	2.05%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.052e+00	0.6928	613.0	3.06%	1253.8	3.01%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.047e+00	0.6946	1029.0	5.15%	2114.1	5.07%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.043e+00	0.6957	1011.0	5.05%	2077.1	4.98%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.042e+00	0.6957	1273.0	6.37%	2620.8	6.28%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.036e+00	0.6977	2185.0	10.93%	4514.0	10.82%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.034e+00	0.6977	1058.0	5.29%	2175.2	5.22%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.018e+00	0.7073	1082.0	5.41%	2226.0	5.34%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.013e+00	0.7095	1362.0	6.81%	2807.2	6.73%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.012e+00	0.7095	534.0	2.67%	1092.1	2.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.002e+00	0.7140	801.0	4.00%	1646.0	3.95%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-9.969e-01	0.7163	824.0	4.12%	1693.7	4.06%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-9.930e-01	0.7176	548.0	2.74%	1122.2	2.69%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-9.589e-01	0.7409	718.0	3.59%	1476.4	3.54%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-9.511e-01	0.7452	627.0	3.14%	1288.0	3.09%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-9.468e-01	0.7468	693.0	3.46%	1425.6	3.42%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.441e-01	0.7468	98.0	0.49%	196.9	0.47%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-9.441e-01	0.7468	98.0	0.49%	196.9	0.47%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-9.389e-01	0.7481	2.0	0.01%	2.7	0.01%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-9.321e-01	0.7516	165.0	0.83%	334.7	0.80%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-9.312e-01	0.7516	214.0	1.07%	435.8	1.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-9.293e-01	0.7516	594.0	2.97%	1222.0	2.93%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-9.212e-01	0.7551	4502.0	22.51%	9347.4	22.41%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-9.115e-01	0.7609	36.0	0.18%	70.5	0.17%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-9.109e-01	0.7609	338.0	1.69%	692.3	1.66%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-9.099e-01	0.7609	136.0	0.68%	275.3	0.66%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.045e-01	0.7616	150.0	0.75%	304.9	0.73%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-8.972e-01	0.7656	270.0	1.35%	552.6	1.33%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-8.953e-01	0.7656	727.0	3.64%	1499.7	3.60%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-8.926e-01	0.7660	617.0	3.08%	1271.7	3.05%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-8.825e-01	0.7722	347.0	1.74%	712.2	1.71%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-8.757e-01	0.7759	412.0	2.06%	848.0	2.03%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-8.677e-01	0.7806	688.0	3.44%	1420.2	3.41%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-8.644e-01	0.7816	539.0	2.70%	1111.3	2.66%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-8.602e-01	0.7833	10.0	0.05%	18.0	0.04%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-8.598e-01	0.7833	9.0	0.04%	16.1	0.04%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-8.495e-01	0.7885	3857.0	19.29%	8015.7	19.22%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-8.490e-01	0.7885	324.0	1.62%	666.7	1.60%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-8.453e-01	0.7887	151.0	0.76%	308.1	0.74%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-8.272e-01	0.8015	171.0	0.85%	350.7	0.84%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-8.120e-01	0.8122	1943.0	9.71%	4035.8	9.68%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.937e-01	0.8255	971.0	4.86%	2014.3	4.83%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-7.872e-01	0.8293	1712.0	8.56%	3557.3	8.53%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-7.869e-01	0.8293	231.0	1.16%	476.5	1.14%
SeqBias: CA-repeat	CACACACACA	1e0	-7.863e-01	0.8293	7874.0	39.37%	16397.4	39.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-7.790e-01	0.8312	1579.0	7.90%	3282.0	7.87%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-7.783e-01	0.8312	78.0	0.39%	159.6	0.38%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-7.755e-01	0.8312	132.0	0.66%	272.0	0.65%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-7.738e-01	0.8312	715.0	3.57%	1483.7	3.56%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-7.727e-01	0.8312	1958.0	9.79%	4071.6	9.76%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-7.612e-01	0.8379	2697.0	13.48%	5612.3	13.46%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-7.566e-01	0.8401	2988.0	14.94%	6219.2	14.91%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-7.488e-01	0.8451	1297.0	6.49%	2698.0	6.47%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-7.442e-01	0.8473	344.0	1.72%	713.1	1.71%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-7.372e-01	0.8516	290.0	1.45%	601.6	1.44%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-7.355e-01	0.8516	956.0	4.78%	1988.1	4.77%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-7.251e-01	0.8586	123.0	0.61%	254.5	0.61%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.218e-01	0.8598	1382.0	6.91%	2877.5	6.90%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.205e-01	0.8598	340.0	1.70%	706.5	1.69%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.174e-01	0.8603	530.0	2.65%	1102.6	2.64%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-7.121e-01	0.8632	1547.0	7.74%	3222.6	7.73%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.981e-01	0.8737	443.0	2.21%	922.4	2.21%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.980e-01	0.8737	1539.0	7.70%	3207.6	7.69%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-6.935e-01	0.8744	604.0	3.02%	1258.1	3.02%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-6.924e-01	0.8744	98.0	0.49%	203.5	0.49%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-6.912e-01	0.8744	4.0	0.02%	7.4	0.02%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-6.834e-01	0.8783	4144.0	20.72%	8641.8	20.72%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-6.803e-01	0.8794	1631.0	8.15%	3401.6	8.16%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-6.749e-01	0.8825	959.0	4.79%	2000.4	4.80%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.737e-01	0.8825	171.0	0.85%	356.0	0.85%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-6.670e-01	0.8862	293.0	1.47%	611.9	1.47%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-6.518e-01	0.8981	1728.0	8.64%	3607.1	8.65%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-6.333e-01	0.9131	18.0	0.09%	37.6	0.09%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-6.263e-01	0.9179	1392.0	6.96%	2909.9	6.98%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-6.201e-01	0.9218	19954.0	99.77%	41606.1	99.77%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.174e-01	0.9226	1425.0	7.12%	2979.6	7.14%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-6.172e-01	0.9226	1164.0	5.82%	2434.9	5.84%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-6.065e-01	0.9292	3766.0	18.83%	7867.2	18.87%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-6.040e-01	0.9298	119.0	0.60%	250.3	0.60%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-5.912e-01	0.9401	875.0	4.38%	1833.7	4.40%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.823e-01	0.9467	1453.0	7.27%	3042.8	7.30%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-5.781e-01	0.9490	904.0	4.52%	1895.5	4.55%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-5.686e-01	0.9563	1355.0	6.78%	2839.3	6.81%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-5.578e-01	0.9649	360.0	1.80%	758.6	1.82%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-5.577e-01	0.9649	527.0	2.63%	1108.0	2.66%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-5.474e-01	0.9714	1710.0	8.55%	3584.6	8.60%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-5.192e-01	0.9974	142.0	0.71%	302.7	0.73%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-5.084e-01	1.0000	1012.0	5.06%	2129.3	5.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.071e-01	1.0000	1287.0	6.44%	2705.6	6.49%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-5.033e-01	1.0000	1228.0	6.14%	2582.9	6.19%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-5.019e-01	1.0000	1797.0	8.98%	3773.7	9.05%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-5.016e-01	1.0000	330.0	1.65%	699.9	1.68%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-4.694e-01	1.0000	961.0	4.81%	2027.6	4.86%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.693e-01	1.0000	2726.0	13.63%	5722.4	13.72%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-4.678e-01	1.0000	1513.0	7.56%	3184.2	7.64%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-4.613e-01	1.0000	2.0	0.01%	4.9	0.01%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.513e-01	1.0000	18.0	0.09%	40.3	0.10%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-4.513e-01	1.0000	18.0	0.09%	40.0	0.10%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-4.502e-01	1.0000	206.0	1.03%	441.0	1.06%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-4.459e-01	1.0000	910.0	4.55%	1923.5	4.61%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-4.418e-01	1.0000	8.0	0.04%	18.5	0.04%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-4.396e-01	1.0000	103.0	0.52%	223.9	0.54%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-4.389e-01	1.0000	2831.0	14.16%	5948.5	14.26%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.383e-01	1.0000	95.0	0.47%	206.4	0.49%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-4.381e-01	1.0000	12.0	0.06%	28.0	0.07%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-4.368e-01	1.0000	1223.0	6.12%	2581.5	6.19%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-4.337e-01	1.0000	2290.0	11.45%	4817.6	11.55%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-4.242e-01	1.0000	744.0	3.72%	1577.1	3.78%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-4.225e-01	1.0000	1426.0	7.13%	3009.7	7.22%
SeqBias: TA-repeat	TATATATATA	1e0	-4.178e-01	1.0000	4314.0	21.57%	9054.3	21.71%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-4.148e-01	1.0000	477.0	2.38%	1016.0	2.44%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-4.146e-01	1.0000	9335.0	46.67%	19537.1	46.85%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-4.129e-01	1.0000	94.0	0.47%	205.3	0.49%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-4.102e-01	1.0000	161.0	0.80%	348.9	0.84%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.033e-01	1.0000	596.0	2.98%	1268.3	3.04%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-4.017e-01	1.0000	1595.0	7.98%	3367.4	8.07%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-3.972e-01	1.0000	731.0	3.65%	1553.4	3.72%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-3.884e-01	1.0000	1837.0	9.19%	3877.0	9.30%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-3.882e-01	1.0000	54.0	0.27%	120.2	0.29%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.856e-01	1.0000	99.0	0.50%	217.4	0.52%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-3.739e-01	1.0000	466.0	2.33%	998.0	2.39%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-3.711e-01	1.0000	24.0	0.12%	55.3	0.13%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-3.666e-01	1.0000	530.0	2.65%	1133.4	2.72%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.620e-01	1.0000	588.0	2.94%	1256.2	3.01%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-3.556e-01	1.0000	1588.0	7.94%	3361.5	8.06%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-3.540e-01	1.0000	58.0	0.29%	130.5	0.31%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.494e-01	1.0000	583.0	2.92%	1247.4	2.99%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-3.477e-01	1.0000	147.0	0.73%	322.9	0.77%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-3.452e-01	1.0000	614.0	3.07%	1313.1	3.15%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.441e-01	1.0000	1575.0	7.88%	3336.8	8.00%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-3.354e-01	1.0000	728.0	3.64%	1555.3	3.73%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.274e-01	1.0000	2490.0	12.45%	5260.9	12.62%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-3.273e-01	1.0000	481.0	2.40%	1034.3	2.48%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-3.185e-01	1.0000	942.0	4.71%	2009.9	4.82%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-3.174e-01	1.0000	3433.0	17.16%	7239.3	17.36%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-3.064e-01	1.0000	155.0	0.78%	342.1	0.82%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-3.013e-01	1.0000	5481.0	27.41%	11530.7	27.65%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-3.012e-01	1.0000	692.0	3.46%	1484.3	3.56%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.994e-01	1.0000	867.0	4.33%	1854.3	4.45%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-2.965e-01	1.0000	346.0	1.73%	751.7	1.80%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-2.926e-01	1.0000	812.0	4.06%	1739.8	4.17%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.905e-01	1.0000	1609.0	8.04%	3419.6	8.20%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.856e-01	1.0000	784.0	3.92%	1681.9	4.03%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-2.854e-01	1.0000	2977.0	14.89%	6293.2	15.09%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.799e-01	1.0000	1043.0	5.21%	2229.1	5.35%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-2.784e-01	1.0000	3577.0	17.89%	7553.3	18.11%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.780e-01	1.0000	135.0	0.68%	301.5	0.72%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-2.735e-01	1.0000	555.0	2.77%	1198.0	2.87%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.734e-01	1.0000	70.0	0.35%	160.8	0.39%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.733e-01	1.0000	158.0	0.79%	352.0	0.84%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.727e-01	1.0000	296.0	1.48%	647.7	1.55%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-2.696e-01	1.0000	182.0	0.91%	404.0	0.97%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-2.659e-01	1.0000	3731.0	18.66%	7880.1	18.90%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.652e-01	1.0000	669.0	3.35%	1441.7	3.46%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.649e-01	1.0000	2942.0	14.71%	6226.5	14.93%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-2.632e-01	1.0000	4.0	0.02%	11.9	0.03%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.605e-01	1.0000	164.0	0.82%	365.9	0.88%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-2.566e-01	1.0000	432.0	2.16%	939.9	2.25%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-2.441e-01	1.0000	1652.0	8.26%	3521.8	8.45%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-2.399e-01	1.0000	749.0	3.74%	1615.0	3.87%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.392e-01	1.0000	56.0	0.28%	131.4	0.32%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.344e-01	1.0000	757.0	3.79%	1633.2	3.92%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.300e-01	1.0000	1039.0	5.20%	2231.3	5.35%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-2.296e-01	1.0000	700.0	3.50%	1513.3	3.63%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-2.294e-01	1.0000	275.0	1.38%	607.3	1.46%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-2.282e-01	1.0000	1446.0	7.23%	3091.9	7.41%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.269e-01	1.0000	1129.0	5.64%	2423.0	5.81%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.264e-01	1.0000	2078.0	10.39%	4423.8	10.61%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.222e-01	1.0000	3.0	0.01%	9.9	0.02%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.207e-01	1.0000	222.0	1.11%	494.1	1.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.199e-01	1.0000	841.0	4.21%	1814.9	4.35%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-2.192e-01	1.0000	260.0	1.30%	576.7	1.38%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-2.147e-01	1.0000	709.0	3.55%	1535.4	3.68%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-2.142e-01	1.0000	72.0	0.36%	168.0	0.40%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-2.083e-01	1.0000	284.0	1.42%	629.3	1.51%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.083e-01	1.0000	659.0	3.29%	1430.8	3.43%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-2.050e-01	1.0000	2069.0	10.35%	4411.4	10.58%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.024e-01	1.0000	1616.0	8.08%	3457.1	8.29%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-2.006e-01	1.0000	1831.0	9.16%	3911.2	9.38%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.993e-01	1.0000	171.0	0.85%	386.4	0.93%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.993e-01	1.0000	3578.0	17.89%	7585.8	18.19%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.991e-01	1.0000	456.0	2.28%	999.9	2.40%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.952e-01	1.0000	266.0	1.33%	592.3	1.42%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.924e-01	1.0000	1454.0	7.27%	3118.9	7.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.838e-01	1.0000	1103.0	5.51%	2378.7	5.70%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.828e-01	1.0000	139.0	0.69%	318.6	0.76%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.821e-01	1.0000	1684.0	8.42%	3607.6	8.65%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.819e-01	1.0000	312.0	1.56%	693.8	1.66%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.795e-01	1.0000	210.0	1.05%	473.5	1.14%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.763e-01	1.0000	498.0	2.49%	1093.4	2.62%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.724e-01	1.0000	4948.0	24.74%	10471.3	25.11%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.710e-01	1.0000	2678.0	13.39%	5706.1	13.68%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-1.701e-01	1.0000	643.0	3.21%	1404.3	3.37%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.683e-01	1.0000	944.0	4.72%	2045.7	4.91%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.623e-01	1.0000	1552.0	7.76%	3335.1	8.00%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.622e-01	1.0000	457.0	2.28%	1008.1	2.42%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.622e-01	1.0000	457.0	2.28%	1008.1	2.42%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.613e-01	1.0000	185.0	0.92%	421.8	1.01%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.561e-01	1.0000	885.0	4.42%	1923.8	4.61%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.467e-01	1.0000	363.0	1.81%	809.3	1.94%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.456e-01	1.0000	2540.0	12.70%	5428.0	13.02%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.418e-01	1.0000	969.0	4.84%	2106.8	5.05%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.413e-01	1.0000	529.0	2.65%	1167.5	2.80%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.379e-01	1.0000	133.0	0.66%	310.4	0.74%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.344e-01	1.0000	538.0	2.69%	1188.9	2.85%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-1.331e-01	1.0000	522.0	2.61%	1154.5	2.77%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.317e-01	1.0000	58.0	0.29%	143.1	0.34%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.280e-01	1.0000	493.0	2.46%	1093.1	2.62%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.229e-01	1.0000	928.0	4.64%	2025.0	4.86%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.195e-01	1.0000	1593.0	7.96%	3439.4	8.25%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.193e-01	1.0000	2802.0	14.01%	5993.5	14.37%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.192e-01	1.0000	1206.0	6.03%	2619.0	6.28%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.174e-01	1.0000	262.0	1.31%	596.7	1.43%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-1.149e-01	1.0000	723.0	3.62%	1590.2	3.81%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.141e-01	1.0000	97.0	0.48%	233.4	0.56%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-1.087e-01	1.0000	1330.0	6.65%	2886.6	6.92%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-1.061e-01	1.0000	1147.0	5.73%	2498.9	5.99%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.046e-01	1.0000	171.0	0.85%	399.3	0.96%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.018e-01	1.0000	15.0	0.07%	44.7	0.11%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.006e-01	1.0000	3784.0	18.92%	8073.5	19.36%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-9.969e-02	1.0000	652.0	3.26%	1443.1	3.46%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.869e-02	1.0000	417.0	2.08%	937.3	2.25%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-9.766e-02	1.0000	2188.0	10.94%	4710.3	11.30%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-9.749e-02	1.0000	271.0	1.35%	620.5	1.49%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-9.343e-02	1.0000	378.0	1.89%	854.9	2.05%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-9.306e-02	1.0000	1730.0	8.65%	3743.8	8.98%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-9.042e-02	1.0000	2148.0	10.74%	4631.0	11.10%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-9.033e-02	1.0000	327.0	1.64%	744.0	1.78%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-8.970e-02	1.0000	486.0	2.43%	1089.4	2.61%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-8.912e-02	1.0000	491.0	2.46%	1100.6	2.64%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-8.810e-02	1.0000	2.0	0.01%	9.0	0.02%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-8.803e-02	1.0000	520.0	2.60%	1163.2	2.79%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.713e-02	1.0000	138.0	0.69%	329.8	0.79%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-8.713e-02	1.0000	138.0	0.69%	329.3	0.79%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-8.625e-02	1.0000	7.0	0.03%	24.5	0.06%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-8.591e-02	1.0000	972.0	4.86%	2134.2	5.12%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-8.073e-02	1.0000	181.0	0.91%	426.9	1.02%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-8.037e-02	1.0000	853.0	4.26%	1882.2	4.51%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-7.982e-02	1.0000	162.0	0.81%	384.8	0.92%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-7.969e-02	1.0000	136.0	0.68%	326.1	0.78%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-7.928e-02	1.0000	1028.0	5.14%	2257.0	5.41%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.789e-02	1.0000	1581.0	7.90%	3436.7	8.24%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-7.518e-02	1.0000	346.0	1.73%	790.7	1.90%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-7.485e-02	1.0000	1677.0	8.38%	3642.4	8.73%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.158e-02	1.0000	2068.0	10.34%	4474.7	10.73%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-7.145e-02	1.0000	323.0	1.62%	741.6	1.78%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-7.123e-02	1.0000	98.0	0.49%	242.4	0.58%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-6.949e-02	1.0000	631.0	3.16%	1410.3	3.38%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-6.815e-02	1.0000	627.0	3.14%	1403.0	3.36%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-6.719e-02	1.0000	62.0	0.31%	160.1	0.38%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-6.691e-02	1.0000	385.0	1.93%	878.8	2.11%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-6.655e-02	1.0000	50.0	0.25%	132.7	0.32%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-6.445e-02	1.0000	226.0	1.13%	530.9	1.27%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-6.261e-02	1.0000	1436.0	7.18%	3138.3	7.53%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-6.036e-02	1.0000	795.0	3.98%	1768.4	4.24%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-5.896e-02	1.0000	4403.0	22.02%	9415.6	22.58%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-5.808e-02	1.0000	1501.0	7.51%	3280.8	7.87%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-5.660e-02	1.0000	2318.0	11.59%	5017.4	12.03%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-5.634e-02	1.0000	251.0	1.26%	588.7	1.41%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.222e-02	1.0000	1149.0	5.75%	2533.7	6.08%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-5.178e-02	1.0000	388.0	1.94%	891.7	2.14%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-5.126e-02	1.0000	140.0	0.70%	342.7	0.82%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-5.053e-02	1.0000	417.0	2.08%	956.0	2.29%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-4.921e-02	1.0000	50.0	0.25%	135.8	0.33%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.848e-02	1.0000	1321.0	6.60%	2904.4	6.96%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-4.804e-02	1.0000	52.0	0.26%	140.1	0.34%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-4.714e-02	1.0000	281.0	1.41%	658.9	1.58%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-4.403e-02	1.0000	55.0	0.27%	149.0	0.36%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-4.313e-02	1.0000	1988.0	9.94%	4331.3	10.39%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-4.282e-02	1.0000	3647.0	18.23%	7844.6	18.81%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.825e-02	1.0000	640.0	3.20%	1448.2	3.47%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.740e-02	1.0000	175.0	0.88%	426.3	1.02%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.643e-02	1.0000	266.0	1.33%	630.1	1.51%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.592e-02	1.0000	635.0	3.17%	1439.3	3.45%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-3.550e-02	1.0000	13.0	0.07%	45.4	0.11%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-3.524e-02	1.0000	52.0	0.26%	143.0	0.34%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.187e-02	1.0000	2820.0	14.10%	6113.5	14.66%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-3.109e-02	1.0000	358.0	1.79%	837.1	2.01%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-3.084e-02	1.0000	12.0	0.06%	43.6	0.10%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.898e-02	1.0000	1018.0	5.09%	2274.8	5.45%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.897e-02	1.0000	1553.0	7.76%	3422.8	8.21%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.876e-02	1.0000	1141.0	5.71%	2539.2	6.09%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-2.856e-02	1.0000	957.0	4.78%	2143.4	5.14%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-2.766e-02	1.0000	32.0	0.16%	96.9	0.23%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.693e-02	1.0000	913.0	4.57%	2050.7	4.92%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-2.674e-02	1.0000	26.0	0.13%	81.1	0.19%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.502e-02	1.0000	1495.0	7.47%	3304.1	7.92%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-2.381e-02	1.0000	739.0	3.69%	1677.8	4.02%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.173e-02	1.0000	135.0	0.68%	343.5	0.82%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.165e-02	1.0000	480.0	2.40%	1114.8	2.67%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.994e-02	1.0000	4174.0	20.87%	9004.6	21.59%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-1.987e-02	1.0000	285.0	1.43%	684.4	1.64%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.964e-02	1.0000	1149.0	5.75%	2570.7	6.16%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.963e-02	1.0000	1469.0	7.34%	3258.6	7.81%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.951e-02	1.0000	70.0	0.35%	192.6	0.46%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.929e-02	1.0000	532.0	2.66%	1232.0	2.95%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.784e-02	1.0000	2549.0	12.75%	5568.1	13.35%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.706e-02	1.0000	6.0	0.03%	28.4	0.07%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-1.662e-02	1.0000	21.0	0.10%	71.0	0.17%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.662e-02	1.0000	292.0	1.46%	703.6	1.69%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.647e-02	1.0000	584.0	2.92%	1349.7	3.24%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.626e-02	1.0000	6172.0	30.86%	13224.9	31.71%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.625e-02	1.0000	7221.0	36.10%	15425.3	36.99%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.500e-02	1.0000	148.0	0.74%	378.5	0.91%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-1.487e-02	1.0000	1832.0	9.16%	4047.6	9.71%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.470e-02	1.0000	2695.0	13.48%	5888.5	14.12%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.316e-02	1.0000	263.0	1.31%	643.0	1.54%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.293e-02	1.0000	202.0	1.01%	504.9	1.21%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.255e-02	1.0000	668.0	3.34%	1540.3	3.69%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.205e-02	1.0000	390.0	1.95%	928.6	2.23%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.199e-02	1.0000	1925.0	9.62%	4255.1	10.20%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-1.181e-02	1.0000	1710.0	8.55%	3795.7	9.10%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.162e-02	1.0000	418.0	2.09%	991.6	2.38%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.113e-02	1.0000	164.0	0.82%	419.8	1.01%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.088e-02	1.0000	1229.0	6.14%	2763.2	6.63%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-1.069e-02	1.0000	68.0	0.34%	193.4	0.46%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-8.981e-03	1.0000	58.0	0.29%	170.4	0.41%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-8.383e-03	1.0000	5679.0	28.39%	12229.0	29.32%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-8.346e-03	1.0000	207.0	1.03%	522.2	1.25%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-7.910e-03	1.0000	504.0	2.52%	1190.1	2.85%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-6.782e-03	1.0000	716.0	3.58%	1661.8	3.98%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-6.692e-03	1.0000	699.0	3.50%	1624.7	3.90%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-6.514e-03	1.0000	137.0	0.69%	363.2	0.87%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-6.461e-03	1.0000	80.0	0.40%	227.7	0.55%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-5.174e-03	1.0000	2053.0	10.27%	4563.7	10.94%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.873e-03	1.0000	1159.0	5.79%	2637.0	6.32%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.569e-03	1.0000	9.0	0.04%	43.8	0.10%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-4.410e-03	1.0000	547.0	2.73%	1298.8	3.11%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-4.297e-03	1.0000	3064.0	15.32%	6731.3	16.14%
Tal1	CATCTG	1e0	-3.939e-03	1.0000	1862.0	9.31%	4163.2	9.98%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.937e-03	1.0000	1279.0	6.40%	2904.2	6.96%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-3.822e-03	1.0000	182.0	0.91%	475.9	1.14%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-3.503e-03	1.0000	203.0	1.01%	525.8	1.26%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-3.355e-03	1.0000	192.0	0.96%	500.6	1.20%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.318e-03	1.0000	1408.0	7.04%	3189.6	7.65%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-3.315e-03	1.0000	2176.0	10.88%	4844.7	11.62%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-3.246e-03	1.0000	2082.0	10.41%	4643.9	11.14%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.230e-03	1.0000	15.0	0.07%	63.8	0.15%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.714e-03	1.0000	2780.0	13.90%	6146.0	14.74%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.475e-03	1.0000	636.0	3.18%	1508.3	3.62%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-2.344e-03	1.0000	801.0	4.00%	1874.8	4.50%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-2.298e-03	1.0000	295.0	1.47%	743.3	1.78%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.047e-03	1.0000	73.0	0.36%	220.2	0.53%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.999e-03	1.0000	716.0	3.58%	1690.7	4.05%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-1.878e-03	1.0000	1129.0	5.64%	2599.8	6.23%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.716e-03	1.0000	2577.0	12.88%	5729.1	13.74%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.710e-03	1.0000	2253.0	11.27%	5034.5	12.07%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.528e-03	1.0000	1497.0	7.49%	3406.9	8.17%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.267e-03	1.0000	172.0	0.86%	465.8	1.12%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.261e-03	1.0000	2517.0	12.58%	5612.6	13.46%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.250e-03	1.0000	984.0	4.92%	2292.4	5.50%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-1.174e-03	1.0000	1717.0	8.58%	3891.3	9.33%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-9.750e-04	1.0000	71.0	0.36%	221.8	0.53%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-9.750e-04	1.0000	107.0	0.53%	311.1	0.75%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.430e-04	1.0000	1326.0	6.63%	3048.4	7.31%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.080e-04	1.0000	1255.0	6.28%	2894.3	6.94%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-9.040e-04	1.0000	95.0	0.47%	282.6	0.68%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-7.870e-04	1.0000	1673.0	8.37%	3808.2	9.13%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-7.170e-04	1.0000	720.0	3.60%	1721.7	4.13%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-7.060e-04	1.0000	2042.0	10.21%	4610.7	11.06%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-6.310e-04	1.0000	909.0	4.54%	2143.8	5.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.090e-04	1.0000	343.0	1.71%	883.2	2.12%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.030e-04	1.0000	238.0	1.19%	643.8	1.54%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-2.010e-04	1.0000	438.0	2.19%	1108.4	2.66%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.570e-04	1.0000	5098.0	25.49%	11197.8	26.85%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.430e-04	1.0000	222.0	1.11%	609.0	1.46%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.400e-04	1.0000	1744.0	8.72%	4012.7	9.62%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.390e-04	1.0000	797.0	3.98%	1926.7	4.62%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.120e-04	1.0000	1716.0	8.58%	3957.6	9.49%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.030e-04	1.0000	646.0	3.23%	1592.8	3.82%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-9.500e-05	1.0000	569.0	2.84%	1419.4	3.40%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.200e-05	1.0000	1814.0	9.07%	4176.1	10.01%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-7.100e-05	1.0000	1312.0	6.56%	3083.8	7.39%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-5.500e-05	1.0000	949.0	4.75%	2284.8	5.48%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-3.900e-05	1.0000	138.0	0.69%	417.1	1.00%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-3.800e-05	1.0000	1773.0	8.87%	4110.1	9.86%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.500e-05	1.0000	891.0	4.46%	2163.7	5.19%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-2.800e-05	1.0000	1256.0	6.28%	2980.9	7.15%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.800e-05	1.0000	67.0	0.34%	236.2	0.57%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-2.600e-05	1.0000	1187.0	5.93%	2829.4	6.78%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.200e-05	1.0000	921.0	4.61%	2239.6	5.37%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-2.100e-05	1.0000	1004.0	5.02%	2426.7	5.82%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.000e-05	1.0000	1421.0	7.11%	3353.9	8.04%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.700e-05	1.0000	1874.0	9.37%	4352.3	10.44%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.600e-05	1.0000	166.0	0.83%	495.4	1.19%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.600e-05	1.0000	127.0	0.64%	397.4	0.95%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.300e-05	1.0000	145.0	0.73%	444.7	1.07%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.300e-05	1.0000	15.0	0.07%	87.0	0.21%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.100e-05	1.0000	310.0	1.55%	848.2	2.03%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.000e-05	1.0000	143.0	0.71%	441.6	1.06%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-8.000e-06	1.0000	3132.0	15.66%	7101.6	17.03%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-8.000e-06	1.0000	822.0	4.11%	2035.9	4.88%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-7.000e-06	1.0000	4006.0	20.03%	8983.3	21.54%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-6.000e-06	1.0000	564.0	2.82%	1451.0	3.48%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.000e-06	1.0000	1412.0	7.06%	3359.7	8.06%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-6.000e-06	1.0000	63.0	0.32%	235.8	0.57%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-5.000e-06	1.0000	1442.0	7.21%	3429.0	8.22%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-5.000e-06	1.0000	149.0	0.74%	463.4	1.11%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.000e-06	1.0000	301.0	1.50%	837.2	2.01%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-3.000e-06	1.0000	1162.0	5.81%	2817.1	6.76%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.000e-06	1.0000	3590.0	17.95%	8124.8	19.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.000e-06	1.0000	2173.0	10.87%	5060.5	12.13%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.000e-06	1.0000	99.0	0.50%	345.5	0.83%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-1.000e-06	1.0000	1650.0	8.25%	3933.0	9.43%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.000e-06	1.0000	1319.0	6.59%	3199.7	7.67%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-0.000e+00	1.0000	1293.0	6.46%	3146.5	7.55%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-0.000e+00	1.0000	1775.0	8.88%	4221.9	10.12%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	384.0	1.92%	1063.1	2.55%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	1732.0	8.66%	4138.5	9.92%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-0.000e+00	1.0000	681.0	3.40%	1770.7	4.25%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-0.000e+00	1.0000	2690.0	13.45%	6247.0	14.98%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	515.0	2.57%	1383.7	3.32%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-0.000e+00	1.0000	3.0	0.01%	52.3	0.13%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-0.000e+00	1.0000	1.0	0.01%	39.2	0.09%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-0.000e+00	1.0000	246.0	1.23%	739.5	1.77%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-0.000e+00	1.0000	1448.0	7.24%	3521.4	8.44%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-0.000e+00	1.0000	1545.0	7.72%	3738.5	8.96%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-0.000e+00	1.0000	65.0	0.33%	265.6	0.64%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-0.000e+00	1.0000	1221.0	6.11%	3016.9	7.23%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-0.000e+00	1.0000	1505.0	7.52%	3660.3	8.78%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-0.000e+00	1.0000	2134.0	10.67%	5075.3	12.17%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	768.0	3.84%	2005.1	4.81%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-0.000e+00	1.0000	1615.0	8.08%	3941.4	9.45%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	1074.0	5.37%	2724.0	6.53%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	2102.0	10.51%	5031.4	12.06%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-0.000e+00	1.0000	3713.0	18.57%	8554.1	20.51%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	4109.0	20.54%	9425.9	22.60%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-0.000e+00	1.0000	537.0	2.69%	1484.2	3.56%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	288.0	1.44%	880.5	2.11%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-0.000e+00	1.0000	355.0	1.77%	1046.9	2.51%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-0.000e+00	1.0000	2396.0	11.98%	5729.1	13.74%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-0.000e+00	1.0000	1384.0	6.92%	3464.0	8.31%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	465.0	2.33%	1354.9	3.25%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-0.000e+00	1.0000	335.0	1.68%	1025.1	2.46%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	664.0	3.32%	1832.6	4.39%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	5774.0	28.87%	13118.9	31.46%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1323.0	6.62%	3997.1	9.58%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-0.000e+00	1.0000	2095.0	10.47%	5097.6	12.22%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	3497.0	17.48%	8616.5	20.66%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1443.0	7.22%	3822.3	9.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	2453.0	12.26%	6259.3	15.01%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	1178.0	5.89%	3267.4	7.84%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	3102.0	15.51%	7570.8	18.15%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	2069.0	10.35%	5220.6	12.52%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	4505.0	22.53%	10393.0	24.92%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-0.000e+00	1.0000	7741.0	38.70%	17515.9	42.00%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1698.0	8.49%	4408.2	10.57%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	1429.0	7.14%	4375.5	10.49%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-0.000e+00	1.0000	1254.0	6.27%	3279.7	7.86%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-0.000e+00	1.0000	494.0	2.47%	1498.7	3.59%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	439.0	2.20%	1469.8	3.52%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	2602.0	13.01%	6384.3	15.31%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2248.0	11.24%	5652.0	13.55%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-0.000e+00	1.0000	27.0	0.14%	179.2	0.43%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	1280.0	6.40%	3331.6	7.99%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	2901.0	14.51%	7321.8	17.56%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	41702.3	100.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	7.9	0.02%