Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20081)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47667)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-43	-9.916e+01	0.0000	247.0	1.23%	143.0	0.30%
SeqBias: CG bias	SSSSSSSSSS	1e-14	-3.389e+01	0.0000	17476.0	87.38%	40594.7	85.09%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-6	-1.494e+01	0.0001	3353.0	16.77%	7266.1	15.23%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e-5	-1.224e+01	0.0011	2625.0	13.12%	5674.3	11.89%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-4	-1.065e+01	0.0044	3156.0	15.78%	6942.9	14.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-4	-1.062e+01	0.0044	3915.0	19.57%	8701.0	18.24%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-4	-1.059e+01	0.0044	403.0	2.02%	746.8	1.57%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e-3	-7.223e+00	0.0841	5000.0	25.00%	11377.3	23.85%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e-3	-7.198e+00	0.0841	632.0	3.16%	1292.4	2.71%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-2	-6.108e+00	0.2051	1071.0	5.36%	2303.2	4.83%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-2	-5.853e+00	0.2408	187.0	0.94%	345.5	0.72%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-2	-5.786e+00	0.2408	1186.0	5.93%	2574.0	5.40%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-2	-5.710e+00	0.2408	3483.0	17.41%	7898.7	16.56%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e-2	-5.561e+00	0.2532	373.0	1.86%	750.2	1.57%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-2	-5.453e+00	0.2634	379.0	1.90%	765.8	1.61%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-2	-5.391e+00	0.2634	1245.0	6.22%	2721.3	5.70%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e-2	-5.377e+00	0.2634	3826.0	19.13%	8719.0	18.27%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-2	-5.363e+00	0.2634	863.0	4.32%	1851.1	3.88%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-2	-5.236e+00	0.2634	11.0	0.06%	7.3	0.02%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-2	-5.128e+00	0.2733	299.0	1.49%	595.8	1.25%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.014e+00	0.2917	237.0	1.19%	462.3	0.97%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-2	-4.822e+00	0.3373	136.0	0.68%	249.2	0.52%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-2	-4.799e+00	0.3373	3610.0	18.05%	8243.3	17.28%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-4.751e+00	0.3373	12953.0	64.77%	30439.7	63.80%
SeqBias: TA-repeat	TATATATATA	1e-1	-4.550e+00	0.3898	2032.0	10.16%	4570.3	9.58%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-1	-4.525e+00	0.3898	2084.0	10.42%	4692.8	9.84%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e-1	-4.519e+00	0.3898	811.0	4.06%	1756.0	3.68%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-4.300e+00	0.4469	218.0	1.09%	431.6	0.90%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.258e+00	0.4498	741.0	3.71%	1604.6	3.36%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-4.143e+00	0.4879	891.0	4.46%	1950.6	4.09%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e-1	-4.115e+00	0.4879	639.0	3.19%	1376.6	2.89%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.038e+00	0.5080	316.0	1.58%	651.0	1.36%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-3.989e+00	0.5171	467.0	2.33%	990.8	2.08%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e-1	-3.967e+00	0.5171	12.0	0.06%	11.3	0.02%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-1	-3.905e+00	0.5303	559.0	2.79%	1200.0	2.52%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.824e+00	0.5595	320.0	1.60%	664.8	1.39%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e-1	-3.802e+00	0.5595	296.0	1.48%	611.9	1.28%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-3.795e+00	0.5595	3679.0	18.39%	8466.0	17.74%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-3.769e+00	0.5595	2839.0	14.19%	6494.3	13.61%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e-1	-3.700e+00	0.5697	886.0	4.43%	1953.9	4.10%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e-1	-3.700e+00	0.5697	1136.0	5.68%	2529.7	5.30%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-1	-3.691e+00	0.5697	384.0	1.92%	810.2	1.70%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-3.687e+00	0.5697	703.0	3.52%	1534.4	3.22%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e-1	-3.674e+00	0.5697	2126.0	10.63%	4831.3	10.13%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e-1	-3.660e+00	0.5697	1646.0	8.23%	3713.4	7.78%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e-1	-3.586e+00	0.5697	1297.0	6.49%	2906.0	6.09%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-1	-3.578e+00	0.5697	3315.0	16.57%	7623.7	15.98%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e-1	-3.544e+00	0.5697	750.0	3.75%	1646.8	3.45%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e-1	-3.480e+00	0.5794	894.0	4.47%	1979.0	4.15%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.465e+00	0.5794	57.0	0.29%	98.1	0.21%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e-1	-3.454e+00	0.5794	4288.0	21.44%	9924.0	20.80%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-3.432e+00	0.5794	70.0	0.35%	125.2	0.26%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-3.422e+00	0.5794	794.0	3.97%	1751.5	3.67%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-3.414e+00	0.5794	1113.0	5.56%	2487.5	5.21%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-3.395e+00	0.5794	435.0	2.17%	932.3	1.95%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-3.289e+00	0.6138	123.0	0.61%	239.5	0.50%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-3.138e+00	0.7014	2417.0	12.08%	5542.6	11.62%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-3.100e+00	0.7163	6489.0	32.45%	15160.5	31.78%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.086e+00	0.7163	182.0	0.91%	371.4	0.78%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-1	-3.072e+00	0.7163	1119.0	5.59%	2515.4	5.27%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.045e+00	0.7196	435.0	2.17%	941.7	1.97%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-2.927e+00	0.7962	145.0	0.73%	292.1	0.61%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-1	-2.925e+00	0.7962	3131.0	15.65%	7234.9	15.16%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-2.920e+00	0.7962	1534.0	7.67%	3488.6	7.31%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-2.919e+00	0.7962	746.0	3.73%	1658.6	3.48%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.912e+00	0.7962	2296.0	11.48%	5272.0	11.05%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e-1	-2.893e+00	0.7962	3679.0	18.39%	8528.7	17.88%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.892e+00	0.7962	1276.0	6.38%	2888.1	6.05%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-1	-2.862e+00	0.7962	329.0	1.65%	705.1	1.48%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e-1	-2.833e+00	0.7962	614.0	3.07%	1357.3	2.84%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-1	-2.808e+00	0.7962	174.0	0.87%	358.7	0.75%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e-1	-2.738e+00	0.8282	150.0	0.75%	306.7	0.64%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.733e+00	0.8282	519.0	2.60%	1142.4	2.39%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-2.694e+00	0.8420	572.0	2.86%	1265.3	2.65%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-2.677e+00	0.8453	19483.0	97.41%	46378.6	97.21%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-2.664e+00	0.8455	3265.0	16.32%	7569.7	15.87%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e-1	-2.632e+00	0.8614	12.0	0.06%	15.8	0.03%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-2.622e+00	0.8614	19.0	0.10%	28.7	0.06%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-2.620e+00	0.8614	1596.0	7.98%	3649.3	7.65%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e-1	-2.595e+00	0.8614	1172.0	5.86%	2660.7	5.58%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-2.591e+00	0.8614	236.0	1.18%	501.8	1.05%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.589e+00	0.8614	67.0	0.34%	127.7	0.27%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-1	-2.584e+00	0.8614	390.0	1.95%	851.7	1.79%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-2.579e+00	0.8614	407.0	2.04%	890.5	1.87%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e-1	-2.552e+00	0.8614	523.0	2.61%	1157.7	2.43%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-2.549e+00	0.8614	660.0	3.30%	1473.0	3.09%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e-1	-2.545e+00	0.8614	333.0	1.67%	722.8	1.51%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.528e+00	0.8614	250.0	1.25%	534.4	1.12%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e-1	-2.519e+00	0.8614	1731.0	8.65%	3971.2	8.32%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e-1	-2.490e+00	0.8614	1501.0	7.51%	3434.0	7.20%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-1	-2.483e+00	0.8614	1497.0	7.49%	3425.2	7.18%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-1	-2.477e+00	0.8614	157.0	0.78%	326.3	0.68%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-1	-2.473e+00	0.8614	10330.0	51.65%	24364.4	51.07%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e-1	-2.467e+00	0.8614	647.0	3.23%	1446.8	3.03%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-1	-2.467e+00	0.8614	361.0	1.80%	788.2	1.65%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e-1	-2.456e+00	0.8614	4645.0	23.23%	10848.4	22.74%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e-1	-2.447e+00	0.8614	1120.0	5.60%	2547.0	5.34%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-2.416e+00	0.8614	4944.0	24.72%	11560.6	24.23%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.412e+00	0.8614	255.0	1.27%	548.7	1.15%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-1	-2.411e+00	0.8614	2912.0	14.56%	6756.5	14.16%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-1	-2.404e+00	0.8614	386.0	1.93%	847.3	1.78%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-2.393e+00	0.8614	2855.0	14.27%	6623.6	13.88%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.361e+00	0.8614	419.0	2.10%	924.5	1.94%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.332e+00	0.8614	233.0	1.17%	500.6	1.05%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-1	-2.331e+00	0.8614	937.0	4.69%	2125.6	4.46%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-1	-2.326e+00	0.8614	912.0	4.56%	2067.5	4.33%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-2.314e+00	0.8614	4484.0	22.42%	10480.2	21.97%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-2.296e+00	0.8614	65.0	0.33%	126.7	0.27%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.263e+00	0.8804	27.0	0.14%	46.1	0.10%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-2.252e+00	0.8814	1867.0	9.34%	4307.8	9.03%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-2.217e+00	0.9047	295.0	1.47%	645.0	1.35%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-2.200e+00	0.9119	362.0	1.81%	798.7	1.67%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-2.199e+00	0.9119	321.0	1.60%	704.2	1.48%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.198e+00	0.9119	1868.0	9.34%	4313.2	9.04%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-2.193e+00	0.9119	2128.0	10.64%	4925.7	10.32%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-2.190e+00	0.9119	135.0	0.68%	282.7	0.59%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-2.187e+00	0.9119	3117.0	15.58%	7258.5	15.21%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-2.157e+00	0.9119	693.0	3.46%	1565.2	3.28%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.135e+00	0.9162	597.0	2.99%	1343.8	2.82%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.112e+00	0.9297	647.0	3.23%	1460.5	3.06%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-2.102e+00	0.9308	880.0	4.40%	2003.5	4.20%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.102e+00	0.9308	1082.0	5.41%	2475.3	5.19%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.096e+00	0.9308	198.0	0.99%	426.6	0.89%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-2.080e+00	0.9308	1152.0	5.76%	2640.4	5.53%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-2.067e+00	0.9337	1310.0	6.55%	3011.4	6.31%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-2.066e+00	0.9337	967.0	4.83%	2208.7	4.63%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.034e+00	0.9494	1287.0	6.44%	2959.7	6.20%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-2.029e+00	0.9494	1835.0	9.18%	4247.2	8.90%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-2.025e+00	0.9494	1570.0	7.85%	3624.7	7.60%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.022e+00	0.9494	1859.0	9.29%	4304.3	9.02%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.020e+00	0.9494	383.0	1.92%	852.3	1.79%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-2.001e+00	0.9494	886.0	4.43%	2022.2	4.24%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.989e+00	0.9494	120.0	0.60%	252.8	0.53%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.989e+00	0.9494	1466.0	7.33%	3382.7	7.09%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-1.982e+00	0.9494	170.0	0.85%	365.2	0.77%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.974e+00	0.9494	623.0	3.12%	1410.5	2.96%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.967e+00	0.9494	2825.0	14.12%	6587.7	13.81%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-1.962e+00	0.9494	2578.0	12.89%	6004.6	12.59%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.956e+00	0.9494	522.0	2.61%	1176.6	2.47%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.954e+00	0.9494	253.0	1.26%	555.7	1.16%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-1.953e+00	0.9494	92.0	0.46%	190.4	0.40%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.942e+00	0.9494	394.0	1.97%	880.0	1.84%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.936e+00	0.9494	132.0	0.66%	280.5	0.59%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.935e+00	0.9494	46.0	0.23%	89.6	0.19%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.928e+00	0.9494	357.0	1.79%	795.4	1.67%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.913e+00	0.9494	448.0	2.24%	1006.4	2.11%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-1.905e+00	0.9494	93.0	0.46%	193.3	0.41%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-1.896e+00	0.9494	570.0	2.85%	1290.9	2.71%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.890e+00	0.9494	195.0	0.97%	425.0	0.89%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.885e+00	0.9494	942.0	4.71%	2159.2	4.53%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.882e+00	0.9494	1064.0	5.32%	2445.1	5.12%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.855e+00	0.9494	19956.0	99.78%	47583.0	99.73%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.848e+00	0.9494	280.0	1.40%	620.2	1.30%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-1.833e+00	0.9578	1360.0	6.80%	3143.2	6.59%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-1.826e+00	0.9579	1147.0	5.73%	2643.4	5.54%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.826e+00	0.9579	32.0	0.16%	60.6	0.13%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.821e+00	0.9579	1868.0	9.34%	4340.8	9.10%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.819e+00	0.9579	1750.0	8.75%	4062.0	8.51%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-1.815e+00	0.9579	1122.0	5.61%	2585.9	5.42%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-1.790e+00	0.9620	1598.0	7.99%	3706.8	7.77%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.783e+00	0.9632	1804.0	9.02%	4192.5	8.79%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.765e+00	0.9739	2098.0	10.49%	4887.2	10.24%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.744e+00	0.9890	1144.0	5.72%	2641.1	5.54%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.743e+00	0.9890	738.0	3.69%	1689.1	3.54%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.743e+00	0.9890	1868.0	9.34%	4346.8	9.11%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.742e+00	0.9890	951.0	4.75%	2188.7	4.59%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-1.733e+00	0.9890	1293.0	6.46%	2992.7	6.27%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.729e+00	0.9890	278.0	1.39%	619.8	1.30%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.725e+00	0.9890	1155.0	5.78%	2668.1	5.59%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.718e+00	0.9890	2845.0	14.22%	6657.9	13.95%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.714e+00	0.9890	2263.0	11.31%	5281.0	11.07%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.710e+00	0.9890	680.0	3.40%	1555.7	3.26%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-1.695e+00	0.9890	4657.0	23.29%	10955.2	22.96%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-1.689e+00	0.9890	400.0	2.00%	903.1	1.89%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.683e+00	0.9890	1136.0	5.68%	2626.8	5.51%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-1.676e+00	0.9890	2058.0	10.29%	4800.7	10.06%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-1.660e+00	0.9908	482.0	2.41%	1095.1	2.30%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.653e+00	0.9917	195.0	0.97%	430.6	0.90%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-1.639e+00	1.0000	2445.0	12.22%	5718.1	11.99%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.630e+00	1.0000	1058.0	5.29%	2446.2	5.13%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.624e+00	1.0000	82.0	0.41%	173.5	0.36%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.622e+00	1.0000	299.0	1.49%	671.1	1.41%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.616e+00	1.0000	858.0	4.29%	1977.3	4.14%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.583e+00	1.0000	1766.0	8.83%	4118.4	8.63%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.583e+00	1.0000	63.0	0.32%	131.3	0.28%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-1.581e+00	1.0000	941.0	4.71%	2174.4	4.56%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.579e+00	1.0000	71.0	0.36%	149.9	0.31%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.577e+00	1.0000	1249.0	6.25%	2899.4	6.08%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.569e+00	1.0000	86.0	0.43%	183.8	0.39%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-1.568e+00	1.0000	807.0	4.04%	1860.3	3.90%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-1.567e+00	1.0000	1376.0	6.88%	3199.9	6.71%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-1.563e+00	1.0000	373.0	1.86%	845.6	1.77%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.560e+00	1.0000	620.0	3.10%	1422.6	2.98%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.544e+00	1.0000	389.0	1.94%	883.2	1.85%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.527e+00	1.0000	20.0	0.10%	37.7	0.08%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.513e+00	1.0000	775.0	3.88%	1788.9	3.75%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.510e+00	1.0000	192.0	0.96%	427.8	0.90%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.494e+00	1.0000	749.0	3.74%	1728.4	3.62%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.489e+00	1.0000	925.0	4.62%	2142.1	4.49%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.476e+00	1.0000	1044.0	5.22%	2423.3	5.08%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-1.472e+00	1.0000	1231.0	6.16%	2864.3	6.00%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.471e+00	1.0000	685.0	3.43%	1579.2	3.31%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.462e+00	1.0000	370.0	1.85%	842.2	1.77%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.452e+00	1.0000	5926.0	29.63%	14002.5	29.35%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.451e+00	1.0000	452.0	2.26%	1034.7	2.17%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.440e+00	1.0000	1244.0	6.22%	2897.8	6.07%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.432e+00	1.0000	974.0	4.87%	2261.8	4.74%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.415e+00	1.0000	31.0	0.15%	62.4	0.13%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-1.414e+00	1.0000	2101.0	10.51%	4925.3	10.32%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.402e+00	1.0000	734.0	3.67%	1698.8	3.56%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.383e+00	1.0000	691.0	3.45%	1598.6	3.35%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.379e+00	1.0000	84.0	0.42%	182.5	0.38%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.375e+00	1.0000	118.0	0.59%	260.1	0.55%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-1.370e+00	1.0000	1099.0	5.50%	2560.0	5.37%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-1.367e+00	1.0000	1143.0	5.71%	2664.9	5.59%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-1.362e+00	1.0000	579.0	2.90%	1336.6	2.80%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.361e+00	1.0000	280.0	1.40%	636.4	1.33%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.345e+00	1.0000	119.0	0.60%	263.9	0.55%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.343e+00	1.0000	78.0	0.39%	169.8	0.36%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.335e+00	1.0000	1541.0	7.70%	3607.2	7.56%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.333e+00	1.0000	7.0	0.03%	11.2	0.02%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.312e+00	1.0000	1129.0	5.64%	2635.3	5.52%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.298e+00	1.0000	185.0	0.92%	417.8	0.88%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.284e+00	1.0000	45.0	0.22%	95.9	0.20%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.281e+00	1.0000	37.0	0.18%	77.5	0.16%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-1.266e+00	1.0000	795.0	3.98%	1850.1	3.88%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.264e+00	1.0000	2344.0	11.72%	5517.0	11.56%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-1.258e+00	1.0000	1277.0	6.39%	2989.1	6.27%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.258e+00	1.0000	1068.0	5.34%	2495.9	5.23%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.251e+00	1.0000	1028.0	5.14%	2402.0	5.03%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-1.247e+00	1.0000	646.0	3.23%	1500.2	3.14%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.244e+00	1.0000	149.0	0.74%	335.8	0.70%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.244e+00	1.0000	696.0	3.48%	1618.3	3.39%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.237e+00	1.0000	1485.0	7.42%	3483.3	7.30%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-1.236e+00	1.0000	1014.0	5.07%	2369.5	4.97%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.226e+00	1.0000	306.0	1.53%	702.7	1.47%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.225e+00	1.0000	3007.0	15.04%	7094.0	14.87%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.219e+00	1.0000	1339.0	6.69%	3140.0	6.58%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.213e+00	1.0000	2616.0	13.08%	6167.5	12.93%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.195e+00	1.0000	511.0	2.56%	1185.6	2.48%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-1.191e+00	1.0000	371.0	1.85%	856.2	1.79%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.178e+00	1.0000	587.0	2.94%	1365.8	2.86%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.169e+00	1.0000	507.0	2.54%	1177.1	2.47%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.168e+00	1.0000	1644.0	8.22%	3866.3	8.10%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.159e+00	1.0000	1189.0	5.95%	2789.9	5.85%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.151e+00	1.0000	3267.0	16.34%	7721.4	16.18%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.143e+00	1.0000	1702.0	8.51%	4006.5	8.40%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-1.141e+00	1.0000	290.0	1.45%	668.5	1.40%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.129e+00	1.0000	1612.0	8.06%	3794.1	7.95%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.121e+00	1.0000	224.0	1.12%	514.7	1.08%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.118e+00	1.0000	212.0	1.06%	486.8	1.02%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.114e+00	1.0000	1514.0	7.57%	3563.5	7.47%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-1.113e+00	1.0000	590.0	2.95%	1376.2	2.88%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.108e+00	1.0000	155.0	0.78%	353.4	0.74%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.091e+00	1.0000	531.0	2.66%	1239.0	2.60%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.084e+00	1.0000	4.0	0.02%	6.9	0.01%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.077e+00	1.0000	3484.0	17.42%	8247.3	17.29%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-1.067e+00	1.0000	1238.0	6.19%	2913.5	6.11%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.066e+00	1.0000	295.0	1.47%	683.9	1.43%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.054e+00	1.0000	3227.0	16.13%	7639.0	16.01%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-1.041e+00	1.0000	542.0	2.71%	1267.9	2.66%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.041e+00	1.0000	272.0	1.36%	630.5	1.32%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.038e+00	1.0000	163.0	0.81%	374.5	0.78%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.038e+00	1.0000	1836.0	9.18%	4335.6	9.09%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-1.031e+00	1.0000	919.0	4.59%	2161.0	4.53%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.029e+00	1.0000	4650.0	23.25%	11029.6	23.12%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.028e+00	1.0000	399.0	1.99%	930.6	1.95%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.021e+00	1.0000	1951.0	9.75%	4610.2	9.66%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.016e+00	1.0000	524.0	2.62%	1226.4	2.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.014e+00	1.0000	4562.0	22.81%	10822.3	22.68%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.010e+00	1.0000	2030.0	10.15%	4799.1	10.06%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.005e+00	1.0000	889.0	4.45%	2091.7	4.38%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-9.996e-01	1.0000	625.0	3.12%	1466.7	3.07%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.955e-01	1.0000	408.0	2.04%	953.6	2.00%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.923e-01	1.0000	1756.0	8.78%	4150.2	8.70%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-9.909e-01	1.0000	144.0	0.72%	331.2	0.69%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-9.848e-01	1.0000	644.0	3.22%	1512.3	3.17%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-9.800e-01	1.0000	345.0	1.73%	805.1	1.69%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-9.782e-01	1.0000	1074.0	5.37%	2532.6	5.31%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-9.775e-01	1.0000	408.0	2.04%	954.1	2.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-9.759e-01	1.0000	372.0	1.86%	869.5	1.82%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-9.736e-01	1.0000	495.0	2.48%	1160.1	2.43%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-9.699e-01	1.0000	162.0	0.81%	374.0	0.78%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-9.600e-01	1.0000	44.0	0.22%	98.4	0.21%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-9.568e-01	1.0000	1117.0	5.58%	2636.4	5.53%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-9.561e-01	1.0000	242.0	1.21%	563.8	1.18%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-9.556e-01	1.0000	889.0	4.45%	2095.0	4.39%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-9.464e-01	1.0000	504.0	2.52%	1183.5	2.48%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-9.448e-01	1.0000	210.0	1.05%	488.7	1.02%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-9.370e-01	1.0000	616.0	3.08%	1449.2	3.04%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-9.349e-01	1.0000	812.0	4.06%	1914.7	4.01%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-9.330e-01	1.0000	13736.0	68.68%	32715.4	68.57%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-9.295e-01	1.0000	655.0	3.28%	1542.0	3.23%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-9.252e-01	1.0000	241.0	1.21%	562.4	1.18%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-9.155e-01	1.0000	1120.0	5.60%	2647.4	5.55%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-9.153e-01	1.0000	4673.0	23.36%	11103.9	23.27%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-9.075e-01	1.0000	2916.0	14.58%	6920.9	14.51%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-8.787e-01	1.0000	325.0	1.62%	763.2	1.60%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-8.728e-01	1.0000	1297.0	6.49%	3072.1	6.44%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-8.724e-01	1.0000	657.0	3.28%	1551.0	3.25%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-8.658e-01	1.0000	369.0	1.85%	868.8	1.82%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.626e-01	1.0000	11.0	0.06%	23.4	0.05%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-8.565e-01	1.0000	67.0	0.34%	155.0	0.32%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-8.492e-01	1.0000	318.0	1.59%	748.1	1.57%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-8.438e-01	1.0000	266.0	1.33%	625.3	1.31%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-8.422e-01	1.0000	66.0	0.33%	152.3	0.32%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-8.416e-01	1.0000	733.0	3.67%	1734.8	3.64%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.380e-01	1.0000	370.0	1.85%	872.8	1.83%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.335e-01	1.0000	556.0	2.78%	1314.2	2.75%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-8.305e-01	1.0000	10.0	0.05%	21.8	0.05%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.277e-01	1.0000	812.0	4.06%	1923.5	4.03%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-8.194e-01	1.0000	1037.0	5.18%	2459.2	5.15%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.178e-01	1.0000	241.0	1.21%	567.6	1.19%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.178e-01	1.0000	241.0	1.21%	567.6	1.19%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-8.160e-01	1.0000	1273.0	6.37%	3021.2	6.33%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-8.126e-01	1.0000	19988.0	99.94%	47678.1	99.93%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-8.022e-01	1.0000	255.0	1.27%	601.4	1.26%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.012e-01	1.0000	998.0	4.99%	2368.3	4.96%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-7.935e-01	1.0000	2494.0	12.47%	5932.9	12.44%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.875e-01	1.0000	205.0	1.03%	483.9	1.01%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-7.772e-01	1.0000	19958.0	99.79%	47606.1	99.78%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-7.676e-01	1.0000	144.0	0.72%	339.5	0.71%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-7.626e-01	1.0000	313.0	1.57%	741.1	1.55%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.623e-01	1.0000	471.0	2.35%	1117.7	2.34%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-7.577e-01	1.0000	457.0	2.28%	1084.5	2.27%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-7.511e-01	1.0000	129.0	0.65%	304.2	0.64%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.490e-01	1.0000	303.0	1.52%	718.8	1.51%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-7.483e-01	1.0000	387.0	1.93%	918.2	1.92%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-7.469e-01	1.0000	350.0	1.75%	830.9	1.74%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-7.446e-01	1.0000	651.0	3.26%	1548.0	3.24%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-7.394e-01	1.0000	885.0	4.42%	2105.1	4.41%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-7.389e-01	1.0000	220.0	1.10%	521.7	1.09%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-7.389e-01	1.0000	220.0	1.10%	521.5	1.09%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-7.339e-01	1.0000	1392.0	6.96%	3314.7	6.95%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-7.322e-01	1.0000	596.0	2.98%	1417.3	2.97%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.313e-01	1.0000	5037.0	25.19%	12006.1	25.16%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-7.310e-01	1.0000	5068.0	25.34%	12080.5	25.32%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-7.303e-01	1.0000	1271.0	6.35%	3026.5	6.34%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-7.250e-01	1.0000	34.0	0.17%	79.6	0.17%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.235e-01	1.0000	252.0	1.26%	598.3	1.25%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-7.194e-01	1.0000	674.0	3.37%	1604.4	3.36%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.131e-01	1.0000	347.0	1.74%	825.5	1.73%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-7.124e-01	1.0000	399.0	1.99%	949.8	1.99%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.073e-01	1.0000	135.0	0.68%	320.1	0.67%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-7.046e-01	1.0000	564.0	2.82%	1343.6	2.82%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-7.003e-01	1.0000	402.0	2.01%	957.9	2.01%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-6.830e-01	1.0000	241.0	1.21%	574.9	1.20%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-6.795e-01	1.0000	1470.0	7.35%	3507.8	7.35%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-6.776e-01	1.0000	2332.0	11.66%	5564.5	11.66%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-6.771e-01	1.0000	88.0	0.44%	209.5	0.44%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-6.759e-01	1.0000	1707.0	8.54%	4073.9	8.54%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-6.740e-01	1.0000	39.0	0.19%	92.3	0.19%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.734e-01	1.0000	1310.0	6.55%	3126.8	6.55%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-6.729e-01	1.0000	1359.0	6.79%	3243.0	6.80%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-6.672e-01	1.0000	141.0	0.70%	337.0	0.71%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-6.662e-01	1.0000	708.0	3.54%	1690.0	3.54%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-6.660e-01	1.0000	406.0	2.03%	969.6	2.03%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-6.613e-01	1.0000	261.0	1.31%	623.9	1.31%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.558e-01	1.0000	43.0	0.21%	102.2	0.21%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-6.502e-01	1.0000	1003.0	5.01%	2396.4	5.02%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.434e-01	1.0000	353.0	1.76%	844.7	1.77%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-6.423e-01	1.0000	2030.0	10.15%	4849.8	10.17%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-6.382e-01	1.0000	209.0	1.04%	500.0	1.05%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-6.377e-01	1.0000	457.0	2.28%	1093.4	2.29%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-6.312e-01	1.0000	1301.0	6.50%	3110.9	6.52%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.297e-01	1.0000	504.0	2.52%	1206.8	2.53%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-6.206e-01	1.0000	1120.0	5.60%	2679.3	5.62%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.130e-01	1.0000	150.0	0.75%	360.5	0.76%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.130e-01	1.0000	150.0	0.75%	360.5	0.76%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-6.108e-01	1.0000	579.0	2.90%	1387.1	2.91%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-6.048e-01	1.0000	440.0	2.20%	1055.4	2.21%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.039e-01	1.0000	323.0	1.62%	775.6	1.63%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-6.006e-01	1.0000	239.0	1.20%	574.0	1.20%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-5.997e-01	1.0000	106.0	0.53%	255.1	0.53%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-5.995e-01	1.0000	3545.0	17.72%	8474.8	17.76%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-5.986e-01	1.0000	317.0	1.58%	761.4	1.60%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-5.959e-01	1.0000	25.0	0.12%	60.0	0.13%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-5.891e-01	1.0000	3199.0	16.00%	7650.0	16.03%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.866e-01	1.0000	2644.0	13.22%	6325.1	13.26%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-5.820e-01	1.0000	1604.0	8.02%	3841.5	8.05%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.813e-01	1.0000	114.0	0.57%	275.7	0.58%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.810e-01	1.0000	3643.0	18.21%	8712.4	18.26%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-5.759e-01	1.0000	993.0	4.96%	2381.8	4.99%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-5.726e-01	1.0000	340.0	1.70%	818.3	1.72%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-5.621e-01	1.0000	542.0	2.71%	1303.9	2.73%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-5.616e-01	1.0000	358.0	1.79%	862.6	1.81%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-5.598e-01	1.0000	1723.0	8.62%	4129.5	8.66%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-5.557e-01	1.0000	829.0	4.15%	1991.8	4.17%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-5.502e-01	1.0000	635.0	3.17%	1527.9	3.20%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-5.459e-01	1.0000	48.0	0.24%	117.4	0.25%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.458e-01	1.0000	1263.0	6.31%	3031.7	6.35%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.446e-01	1.0000	6050.0	30.25%	14468.4	30.33%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-5.402e-01	1.0000	237.0	1.19%	573.4	1.20%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.395e-01	1.0000	814.0	4.07%	1957.0	4.10%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.376e-01	1.0000	1349.0	6.74%	3238.0	6.79%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-5.364e-01	1.0000	114.0	0.57%	277.5	0.58%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-5.331e-01	1.0000	325.0	1.62%	785.1	1.65%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-5.303e-01	1.0000	1214.0	6.07%	2916.9	6.11%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-5.220e-01	1.0000	370.0	1.85%	894.9	1.88%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-5.203e-01	1.0000	1538.0	7.69%	3693.0	7.74%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-5.168e-01	1.0000	797.0	3.98%	1919.0	4.02%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.166e-01	1.0000	2360.0	11.80%	5660.8	11.86%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-5.161e-01	1.0000	2061.0	10.30%	4945.5	10.37%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-5.082e-01	1.0000	298.0	1.49%	722.1	1.51%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-5.065e-01	1.0000	43.0	0.21%	106.3	0.22%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.028e-01	1.0000	755.0	3.77%	1820.6	3.82%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-5.013e-01	1.0000	216.0	1.08%	525.1	1.10%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-4.936e-01	1.0000	1755.0	8.77%	4217.3	8.84%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-4.829e-01	1.0000	37.0	0.18%	92.4	0.19%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-4.798e-01	1.0000	26.0	0.13%	65.2	0.14%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-4.738e-01	1.0000	791.0	3.96%	1910.9	4.01%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.713e-01	1.0000	109.0	0.55%	268.3	0.56%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-4.688e-01	1.0000	393.0	1.97%	954.8	2.00%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-4.614e-01	1.0000	566.0	2.83%	1371.2	2.87%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-4.611e-01	1.0000	4.0	0.02%	10.4	0.02%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-4.567e-01	1.0000	378.0	1.89%	920.0	1.93%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-4.529e-01	1.0000	426.0	2.13%	1035.2	2.17%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.520e-01	1.0000	394.0	1.97%	958.7	2.01%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-4.517e-01	1.0000	48.0	0.24%	120.2	0.25%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-4.498e-01	1.0000	3685.0	18.43%	8844.2	18.54%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-4.492e-01	1.0000	607.0	3.03%	1471.7	3.08%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-4.469e-01	1.0000	1458.0	7.29%	3514.4	7.37%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.446e-01	1.0000	150.0	0.75%	369.4	0.77%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.380e-01	1.0000	1547.0	7.74%	3729.4	7.82%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.274e-01	1.0000	1708.0	8.54%	4117.2	8.63%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-4.209e-01	1.0000	3041.0	15.20%	7311.5	15.32%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-4.208e-01	1.0000	348.0	1.74%	850.6	1.78%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-4.190e-01	1.0000	19.0	0.10%	49.3	0.10%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-4.179e-01	1.0000	461.0	2.31%	1123.9	2.36%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-4.170e-01	1.0000	2465.0	12.32%	5933.3	12.44%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-4.160e-01	1.0000	602.0	3.01%	1463.3	3.07%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-4.005e-01	1.0000	722.0	3.61%	1754.3	3.68%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.975e-01	1.0000	180.0	0.90%	445.9	0.93%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.968e-01	1.0000	684.0	3.42%	1663.6	3.49%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-3.949e-01	1.0000	1279.0	6.40%	3094.5	6.49%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-3.945e-01	1.0000	2742.0	13.71%	6602.9	13.84%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.930e-01	1.0000	16.0	0.08%	42.9	0.09%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-3.926e-01	1.0000	3.0	0.01%	8.3	0.02%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-3.889e-01	1.0000	1326.0	6.63%	3208.2	6.72%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-3.855e-01	1.0000	90.0	0.45%	226.8	0.48%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-3.855e-01	1.0000	335.0	1.68%	822.8	1.72%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-3.839e-01	1.0000	238.0	1.19%	587.2	1.23%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-3.839e-01	1.0000	471.0	2.35%	1151.4	2.41%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-3.833e-01	1.0000	81.0	0.40%	204.2	0.43%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-3.831e-01	1.0000	1199.0	6.00%	2904.9	6.09%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.816e-01	1.0000	396.0	1.98%	970.3	2.03%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-3.749e-01	1.0000	936.0	4.68%	2273.5	4.77%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-3.727e-01	1.0000	38.0	0.19%	98.4	0.21%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-3.723e-01	1.0000	661.0	3.31%	1611.7	3.38%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-3.710e-01	1.0000	315.0	1.57%	775.6	1.63%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-3.646e-01	1.0000	499.0	2.50%	1221.7	2.56%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.638e-01	1.0000	81.0	0.40%	205.4	0.43%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.619e-01	1.0000	491.0	2.46%	1202.4	2.52%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.590e-01	1.0000	1899.0	9.50%	4591.0	9.62%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.556e-01	1.0000	106.0	0.53%	267.7	0.56%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-3.534e-01	1.0000	2578.0	12.89%	6220.7	13.04%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-3.534e-01	1.0000	455.0	2.27%	1116.3	2.34%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-3.496e-01	1.0000	442.0	2.21%	1085.8	2.28%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-3.486e-01	1.0000	305.0	1.52%	753.7	1.58%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-3.460e-01	1.0000	734.0	3.67%	1791.2	3.75%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.449e-01	1.0000	398.0	1.99%	979.6	2.05%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-3.379e-01	1.0000	190.0	0.95%	474.0	0.99%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.371e-01	1.0000	704.0	3.52%	1720.5	3.61%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-3.371e-01	1.0000	1565.0	7.83%	3793.8	7.95%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-3.367e-01	1.0000	469.0	2.34%	1152.4	2.42%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-3.349e-01	1.0000	1351.0	6.75%	3279.8	6.87%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-3.338e-01	1.0000	86.0	0.43%	219.8	0.46%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.338e-01	1.0000	2876.0	14.38%	6940.6	14.55%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.302e-01	1.0000	227.0	1.14%	565.3	1.18%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-3.292e-01	1.0000	1841.0	9.21%	4458.4	9.34%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-3.193e-01	1.0000	7.0	0.03%	20.1	0.04%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.162e-01	1.0000	146.0	0.73%	368.6	0.77%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-3.161e-01	1.0000	2074.0	10.37%	5021.3	10.52%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-3.152e-01	1.0000	1498.0	7.49%	3637.8	7.62%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-3.151e-01	1.0000	1666.0	8.33%	4041.2	8.47%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-3.115e-01	1.0000	214.0	1.07%	535.1	1.12%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-3.099e-01	1.0000	636.0	3.18%	1560.6	3.27%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-3.054e-01	1.0000	114.0	0.57%	290.6	0.61%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-3.049e-01	1.0000	97.0	0.48%	248.6	0.52%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-3.004e-01	1.0000	1573.0	7.87%	3821.4	8.01%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-2.993e-01	1.0000	128.0	0.64%	325.5	0.68%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-2.981e-01	1.0000	424.0	2.12%	1048.2	2.20%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.964e-01	1.0000	347.0	1.74%	861.7	1.81%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.934e-01	1.0000	53.0	0.27%	140.0	0.29%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-2.925e-01	1.0000	266.0	1.33%	664.7	1.39%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.916e-01	1.0000	1881.0	9.40%	4564.2	9.57%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.905e-01	1.0000	1905.0	9.53%	4622.3	9.69%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.878e-01	1.0000	493.0	2.46%	1217.1	2.55%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.877e-01	1.0000	105.0	0.53%	269.6	0.56%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-2.871e-01	1.0000	2337.0	11.68%	5661.9	11.87%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-2.855e-01	1.0000	60.0	0.30%	157.6	0.33%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-2.852e-01	1.0000	1092.0	5.46%	2666.6	5.59%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.849e-01	1.0000	553.0	2.77%	1363.8	2.86%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.832e-01	1.0000	239.0	1.20%	599.7	1.26%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-2.815e-01	1.0000	270.0	1.35%	675.6	1.42%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-2.780e-01	1.0000	69.0	0.34%	180.2	0.38%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-2.774e-01	1.0000	296.0	1.48%	739.3	1.55%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.770e-01	1.0000	445.0	2.23%	1102.2	2.31%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-2.740e-01	1.0000	570.0	2.85%	1407.0	2.95%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-2.736e-01	1.0000	423.0	2.11%	1049.6	2.20%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-2.732e-01	1.0000	638.0	3.19%	1571.7	3.29%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-2.718e-01	1.0000	541.0	2.71%	1336.4	2.80%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-2.703e-01	1.0000	227.0	1.14%	571.5	1.20%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-2.703e-01	1.0000	76.0	0.38%	198.8	0.42%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-2.680e-01	1.0000	262.0	1.31%	657.3	1.38%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-2.634e-01	1.0000	335.0	1.68%	836.6	1.75%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-2.628e-01	1.0000	175.0	0.88%	444.1	0.93%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-2.623e-01	1.0000	93.0	0.46%	241.4	0.51%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-2.615e-01	1.0000	4327.0	21.63%	10443.7	21.89%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-2.551e-01	1.0000	76.0	0.38%	199.8	0.42%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-2.540e-01	1.0000	285.0	1.43%	715.7	1.50%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-2.528e-01	1.0000	316.0	1.58%	791.2	1.66%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.517e-01	1.0000	192.0	0.96%	487.1	1.02%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.499e-01	1.0000	4719.0	23.59%	11387.8	23.87%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-2.497e-01	1.0000	286.0	1.43%	718.8	1.51%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-2.495e-01	1.0000	2124.0	10.62%	5161.0	10.82%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-2.494e-01	1.0000	342.0	1.71%	855.3	1.79%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.471e-01	1.0000	241.0	1.21%	608.8	1.28%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-2.383e-01	1.0000	296.0	1.48%	744.4	1.56%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.373e-01	1.0000	5.0	0.03%	16.6	0.03%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-2.368e-01	1.0000	180.0	0.90%	459.2	0.96%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.350e-01	1.0000	930.0	4.65%	2286.7	4.79%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.338e-01	1.0000	1342.0	6.71%	3282.3	6.88%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-2.336e-01	1.0000	450.0	2.25%	1121.1	2.35%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-2.300e-01	1.0000	515.0	2.57%	1280.5	2.68%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-2.290e-01	1.0000	221.0	1.10%	561.8	1.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.274e-01	1.0000	997.0	4.98%	2450.8	5.14%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.254e-01	1.0000	2471.0	12.35%	6004.1	12.58%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-2.240e-01	1.0000	99.0	0.50%	259.7	0.54%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.236e-01	1.0000	6708.0	33.54%	16160.2	33.87%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.232e-01	1.0000	1940.0	9.70%	4727.8	9.91%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-2.213e-01	1.0000	335.0	1.68%	842.1	1.76%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.190e-01	1.0000	30.0	0.15%	84.6	0.18%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.177e-01	1.0000	246.0	1.23%	624.6	1.31%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.176e-01	1.0000	94.0	0.47%	247.9	0.52%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-2.155e-01	1.0000	2149.0	10.75%	5233.7	10.97%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.133e-01	1.0000	572.0	2.86%	1422.5	2.98%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-2.115e-01	1.0000	1049.0	5.24%	2580.2	5.41%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.106e-01	1.0000	7683.0	38.41%	18498.8	38.77%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.102e-01	1.0000	2385.0	11.92%	5803.7	12.16%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-2.095e-01	1.0000	83.0	0.41%	220.7	0.46%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-2.084e-01	1.0000	957.0	4.78%	2358.6	4.94%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-2.079e-01	1.0000	1485.0	7.42%	3635.3	7.62%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-2.051e-01	1.0000	238.0	1.19%	606.7	1.27%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.012e-01	1.0000	564.0	2.82%	1405.8	2.95%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.994e-01	1.0000	89.0	0.45%	236.0	0.49%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.992e-01	1.0000	1761.0	8.80%	4304.6	9.02%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.988e-01	1.0000	925.0	4.62%	2283.7	4.79%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.968e-01	1.0000	333.0	1.67%	841.2	1.76%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.961e-01	1.0000	19.0	0.10%	56.4	0.12%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.950e-01	1.0000	1159.0	5.79%	2851.9	5.98%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.946e-01	1.0000	75.0	0.38%	201.4	0.42%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.929e-01	1.0000	802.0	4.01%	1986.5	4.16%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.922e-01	1.0000	2746.0	13.73%	6679.3	14.00%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.909e-01	1.0000	200.0	1.00%	514.8	1.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.908e-01	1.0000	270.0	1.35%	687.3	1.44%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.900e-01	1.0000	7.0	0.03%	23.3	0.05%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.900e-01	1.0000	7.0	0.03%	23.5	0.05%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.854e-01	1.0000	186.0	0.93%	480.4	1.01%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.849e-01	1.0000	1642.0	8.21%	4023.0	8.43%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.795e-01	1.0000	168.0	0.84%	436.1	0.91%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.740e-01	1.0000	54.0	0.27%	149.2	0.31%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.737e-01	1.0000	193.0	0.97%	499.3	1.05%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-1.735e-01	1.0000	2673.0	13.36%	6512.3	13.65%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.735e-01	1.0000	19950.0	99.75%	47608.8	99.79%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.697e-01	1.0000	32.0	0.16%	92.1	0.19%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.692e-01	1.0000	611.0	3.06%	1527.1	3.20%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.686e-01	1.0000	458.0	2.29%	1153.8	2.42%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.678e-01	1.0000	135.0	0.68%	355.4	0.74%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.650e-01	1.0000	1418.0	7.09%	3488.1	7.31%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.635e-01	1.0000	132.0	0.66%	348.4	0.73%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.635e-01	1.0000	520.0	2.60%	1306.1	2.74%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-1.634e-01	1.0000	2732.0	13.66%	6659.4	13.96%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.623e-01	1.0000	9788.0	48.94%	23556.8	49.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.622e-01	1.0000	1724.0	8.62%	4229.1	8.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.601e-01	1.0000	3505.0	17.52%	8520.7	17.86%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.599e-01	1.0000	82.0	0.41%	222.8	0.47%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.546e-01	1.0000	571.0	2.85%	1433.2	3.00%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-1.519e-01	1.0000	221.0	1.10%	572.6	1.20%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-1.511e-01	1.0000	531.0	2.66%	1336.8	2.80%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.501e-01	1.0000	121.0	0.60%	322.5	0.68%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.464e-01	1.0000	683.0	3.42%	1709.5	3.58%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.462e-01	1.0000	3730.0	18.65%	9069.7	19.01%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.458e-01	1.0000	21.0	0.10%	64.5	0.14%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.430e-01	1.0000	1343.0	6.71%	3315.8	6.95%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.420e-01	1.0000	104.0	0.52%	280.4	0.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-1.416e-01	1.0000	984.0	4.92%	2444.9	5.12%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.393e-01	1.0000	694.0	3.47%	1738.2	3.64%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.390e-01	1.0000	1005.0	5.03%	2496.0	5.23%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.387e-01	1.0000	141.0	0.70%	374.7	0.79%
SeqBias: CA-repeat	CACACACACA	1e0	-1.363e-01	1.0000	8939.0	44.70%	21550.4	45.17%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-1.355e-01	1.0000	142.0	0.71%	377.4	0.79%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.350e-01	1.0000	2129.0	10.64%	5220.4	10.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.340e-01	1.0000	1407.0	7.03%	3474.7	7.28%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.340e-01	1.0000	865.0	4.32%	2157.8	4.52%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.315e-01	1.0000	9.0	0.04%	31.6	0.07%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.315e-01	1.0000	1520.0	7.60%	3749.7	7.86%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.307e-01	1.0000	2649.0	13.25%	6477.5	13.58%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.306e-01	1.0000	28.0	0.14%	84.4	0.18%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.299e-01	1.0000	205.0	1.03%	536.7	1.12%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.293e-01	1.0000	420.0	2.10%	1069.9	2.24%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.253e-01	1.0000	2309.0	11.54%	5660.8	11.87%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.240e-01	1.0000	2678.0	13.39%	6551.5	13.73%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.225e-01	1.0000	23.0	0.11%	71.5	0.15%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.205e-01	1.0000	117.0	0.58%	316.7	0.66%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.167e-01	1.0000	3015.0	15.07%	7368.3	15.44%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-1.154e-01	1.0000	151.0	0.76%	403.2	0.85%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.124e-01	1.0000	216.0	1.08%	567.3	1.19%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.106e-01	1.0000	915.0	4.58%	2288.6	4.80%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.102e-01	1.0000	876.0	4.38%	2193.5	4.60%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.100e-01	1.0000	432.0	2.16%	1104.7	2.32%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.083e-01	1.0000	881.0	4.41%	2206.7	4.63%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.082e-01	1.0000	1434.0	7.17%	3552.0	7.44%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-1.072e-01	1.0000	321.0	1.60%	830.6	1.74%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.059e-01	1.0000	253.0	1.26%	661.2	1.39%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.031e-01	1.0000	498.0	2.49%	1269.7	2.66%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.026e-01	1.0000	701.0	3.50%	1768.5	3.71%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.024e-01	1.0000	628.0	3.14%	1589.9	3.33%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.015e-01	1.0000	1040.0	5.20%	2597.3	5.44%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-9.961e-02	1.0000	1493.0	7.46%	3700.9	7.76%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-9.927e-02	1.0000	729.0	3.65%	1838.7	3.85%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-9.648e-02	1.0000	562.0	2.81%	1429.4	3.00%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-9.600e-02	1.0000	2362.0	11.81%	5807.5	12.17%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-9.592e-02	1.0000	2278.0	11.39%	5604.6	11.75%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-9.571e-02	1.0000	1628.0	8.14%	4030.8	8.45%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-9.452e-02	1.0000	1137.0	5.68%	2837.3	5.95%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-9.364e-02	1.0000	1632.0	8.16%	4041.6	8.47%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-9.322e-02	1.0000	1026.0	5.13%	2567.4	5.38%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-9.289e-02	1.0000	10090.0	50.45%	24339.7	51.02%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-9.120e-02	1.0000	436.0	2.18%	1120.7	2.35%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-8.842e-02	1.0000	523.0	2.61%	1336.3	2.80%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-8.781e-02	1.0000	400.0	2.00%	1032.3	2.16%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-8.591e-02	1.0000	432.0	2.16%	1112.1	2.33%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-8.542e-02	1.0000	294.0	1.47%	769.1	1.61%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-8.531e-02	1.0000	266.0	1.33%	699.6	1.47%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-8.391e-02	1.0000	851.0	4.25%	2144.3	4.49%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-8.307e-02	1.0000	1590.0	7.95%	3946.3	8.27%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-8.212e-02	1.0000	146.0	0.73%	397.2	0.83%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-8.157e-02	1.0000	179.0	0.90%	481.2	1.01%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-8.142e-02	1.0000	194.0	0.97%	519.3	1.09%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-8.112e-02	1.0000	358.0	1.79%	930.7	1.95%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-8.064e-02	1.0000	512.0	2.56%	1312.1	2.75%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-7.916e-02	1.0000	300.0	1.50%	786.1	1.65%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-7.908e-02	1.0000	318.0	1.59%	831.9	1.74%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-7.904e-02	1.0000	99.0	0.50%	277.8	0.58%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-7.858e-02	1.0000	525.0	2.62%	1345.1	2.82%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-7.813e-02	1.0000	1005.0	5.03%	2524.3	5.29%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-7.697e-02	1.0000	32.0	0.16%	100.1	0.21%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.346e-02	1.0000	1767.0	8.83%	4383.1	9.19%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-7.197e-02	1.0000	1019.0	5.10%	2562.0	5.37%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-7.053e-02	1.0000	298.0	1.49%	784.4	1.64%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-7.041e-02	1.0000	1543.0	7.71%	3841.0	8.05%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-7.024e-02	1.0000	1215.0	6.08%	3042.6	6.38%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-6.797e-02	1.0000	358.0	1.79%	935.8	1.96%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.573e-02	1.0000	992.0	4.96%	2500.5	5.24%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-6.553e-02	1.0000	78.0	0.39%	225.9	0.47%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-6.546e-02	1.0000	569.0	2.84%	1460.8	3.06%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-6.413e-02	1.0000	813.0	4.06%	2062.7	4.32%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-6.358e-02	1.0000	4072.0	20.36%	9963.4	20.88%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.240e-02	1.0000	418.0	2.09%	1087.7	2.28%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-6.222e-02	1.0000	2074.0	10.37%	5138.5	10.77%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-6.103e-02	1.0000	619.0	3.09%	1586.5	3.33%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.958e-02	1.0000	105.0	0.53%	297.1	0.62%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-5.933e-02	1.0000	3406.0	17.03%	8363.9	17.53%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-5.831e-02	1.0000	4207.0	21.04%	10295.3	21.58%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-5.743e-02	1.0000	210.0	1.05%	567.5	1.19%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.712e-02	1.0000	1980.0	9.90%	4915.7	10.30%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-5.590e-02	1.0000	2216.0	11.08%	5489.5	11.51%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-5.573e-02	1.0000	840.0	4.20%	2134.4	4.47%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.562e-02	1.0000	2326.0	11.63%	5756.2	12.06%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-5.454e-02	1.0000	352.0	1.76%	926.6	1.94%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-5.394e-02	1.0000	3112.0	15.56%	7660.0	16.06%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-5.336e-02	1.0000	83.0	0.41%	241.9	0.51%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-5.236e-02	1.0000	340.0	1.70%	897.4	1.88%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-5.182e-02	1.0000	113.0	0.56%	320.2	0.67%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-5.148e-02	1.0000	1037.0	5.18%	2621.1	5.49%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.133e-02	1.0000	166.0	0.83%	457.9	0.96%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-4.922e-02	1.0000	3622.0	18.11%	8898.7	18.65%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-4.832e-02	1.0000	1747.0	8.73%	4358.4	9.14%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-4.824e-02	1.0000	1495.0	7.47%	3744.2	7.85%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-4.753e-02	1.0000	700.0	3.50%	1795.5	3.76%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.730e-02	1.0000	1825.0	9.12%	4550.0	9.54%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.539e-02	1.0000	372.0	1.86%	981.7	2.06%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-4.494e-02	1.0000	208.0	1.04%	567.8	1.19%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-4.483e-02	1.0000	340.0	1.70%	901.6	1.89%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.419e-02	1.0000	46.0	0.23%	144.4	0.30%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.335e-02	1.0000	296.0	1.48%	791.2	1.66%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-4.127e-02	1.0000	637.0	3.19%	1644.5	3.45%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-4.056e-02	1.0000	3622.0	18.11%	8912.4	18.68%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.040e-02	1.0000	67.0	0.34%	202.5	0.42%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-4.031e-02	1.0000	5768.0	28.84%	14079.1	29.51%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-4.027e-02	1.0000	1146.0	5.73%	2899.6	6.08%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.751e-02	1.0000	146.0	0.73%	411.2	0.86%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.636e-02	1.0000	31.0	0.15%	104.1	0.22%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-3.603e-02	1.0000	1217.0	6.08%	3078.6	6.45%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.570e-02	1.0000	1060.0	5.30%	2693.3	5.65%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-3.442e-02	1.0000	132.0	0.66%	376.8	0.79%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-3.421e-02	1.0000	209.0	1.04%	575.5	1.21%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.418e-02	1.0000	585.0	2.93%	1521.6	3.19%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.381e-02	1.0000	109.0	0.55%	316.1	0.66%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-3.339e-02	1.0000	1977.0	9.88%	4938.5	10.35%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-3.259e-02	1.0000	62.0	0.31%	191.2	0.40%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-3.237e-02	1.0000	1023.0	5.12%	2606.7	5.46%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-3.207e-02	1.0000	155.0	0.78%	437.1	0.92%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.039e-02	1.0000	3.0	0.01%	18.1	0.04%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-3.035e-02	1.0000	277.0	1.39%	751.7	1.58%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-3.016e-02	1.0000	780.0	3.90%	2009.3	4.21%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-3.000e-02	1.0000	8.0	0.04%	36.3	0.08%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-2.919e-02	1.0000	2816.0	14.08%	6984.2	14.64%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.910e-02	1.0000	632.0	3.16%	1643.1	3.44%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-2.889e-02	1.0000	857.0	4.29%	2201.7	4.61%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-2.883e-02	1.0000	925.0	4.62%	2369.2	4.97%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-2.862e-02	1.0000	60.0	0.30%	187.9	0.39%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-2.769e-02	1.0000	117.0	0.58%	340.5	0.71%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-2.749e-02	1.0000	45.0	0.22%	146.4	0.31%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-2.697e-02	1.0000	341.0	1.70%	916.6	1.92%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.584e-02	1.0000	474.0	2.37%	1252.1	2.62%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.579e-02	1.0000	149.0	0.74%	425.3	0.89%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-2.561e-02	1.0000	533.0	2.67%	1400.8	2.94%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-2.483e-02	1.0000	1022.0	5.11%	2615.0	5.48%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-2.470e-02	1.0000	80.0	0.40%	243.5	0.51%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-2.328e-02	1.0000	9665.0	48.33%	23455.1	49.16%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-2.206e-02	1.0000	651.0	3.26%	1699.5	3.56%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.183e-02	1.0000	1238.0	6.19%	3151.5	6.61%
Tal1	CATCTG	1e0	-2.173e-02	1.0000	2495.0	12.47%	6222.3	13.04%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-2.065e-02	1.0000	18.0	0.09%	70.5	0.15%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.999e-02	1.0000	1964.0	9.82%	4933.6	10.34%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.852e-02	1.0000	816.0	4.08%	2115.6	4.43%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.847e-02	1.0000	63.0	0.32%	200.5	0.42%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.824e-02	1.0000	211.0	1.05%	592.1	1.24%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.773e-02	1.0000	548.0	2.74%	1448.7	3.04%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.754e-02	1.0000	382.0	1.91%	1030.6	2.16%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.727e-02	1.0000	836.0	4.18%	2167.1	4.54%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.716e-02	1.0000	1868.0	9.34%	4706.3	9.86%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-1.698e-02	1.0000	192.0	0.96%	544.2	1.14%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.680e-02	1.0000	54.0	0.27%	176.4	0.37%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-1.584e-02	1.0000	1999.0	9.99%	5030.2	10.54%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.566e-02	1.0000	129.0	0.65%	380.7	0.80%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.555e-02	1.0000	178.0	0.89%	509.7	1.07%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.545e-02	1.0000	1033.0	5.17%	2659.4	5.57%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.542e-02	1.0000	19.0	0.10%	75.7	0.16%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.527e-02	1.0000	1317.0	6.59%	3360.8	7.04%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.525e-02	1.0000	950.0	4.75%	2454.2	5.14%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-1.518e-02	1.0000	158.0	0.79%	458.0	0.96%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.509e-02	1.0000	1.0	0.01%	11.2	0.02%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-1.500e-02	1.0000	592.0	2.96%	1563.1	3.28%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.409e-02	1.0000	526.0	2.63%	1399.5	2.93%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.399e-02	1.0000	2264.0	11.32%	5683.3	11.91%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.337e-02	1.0000	232.0	1.16%	652.8	1.37%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.314e-02	1.0000	78.0	0.39%	245.7	0.51%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.226e-02	1.0000	579.0	2.90%	1536.7	3.22%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.191e-02	1.0000	192.0	0.96%	550.8	1.15%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.186e-02	1.0000	552.0	2.76%	1469.4	3.08%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.166e-02	1.0000	10087.0	50.43%	24517.4	51.39%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.146e-02	1.0000	529.0	2.65%	1412.9	2.96%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.145e-02	1.0000	436.0	2.18%	1177.6	2.47%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-1.134e-02	1.0000	2470.0	12.35%	6196.2	12.99%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.124e-02	1.0000	39.0	0.19%	137.4	0.29%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-1.100e-02	1.0000	2992.0	14.96%	7468.3	15.65%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.095e-02	1.0000	107.0	0.53%	326.4	0.68%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.071e-02	1.0000	130.0	0.65%	388.6	0.81%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.041e-02	1.0000	2492.0	12.46%	6254.7	13.11%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.039e-02	1.0000	382.0	1.91%	1043.0	2.19%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-9.725e-03	1.0000	1925.0	9.62%	4872.3	10.21%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-8.834e-03	1.0000	10.0	0.05%	49.9	0.10%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-7.975e-03	1.0000	8500.0	42.50%	20755.8	43.50%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-7.459e-03	1.0000	550.0	2.75%	1477.0	3.10%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.073e-03	1.0000	538.0	2.69%	1447.8	3.03%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-7.007e-03	1.0000	1438.0	7.19%	3690.0	7.73%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-6.030e-03	1.0000	386.0	1.93%	1064.1	2.23%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-5.770e-03	1.0000	789.0	3.94%	2084.1	4.37%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-5.640e-03	1.0000	2748.0	13.74%	6909.9	14.48%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.579e-03	1.0000	6376.0	31.88%	15686.9	32.88%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-4.849e-03	1.0000	3356.0	16.78%	8397.0	17.60%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-4.822e-03	1.0000	10.0	0.05%	52.6	0.11%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-4.821e-03	1.0000	556.0	2.78%	1502.2	3.15%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-4.183e-03	1.0000	1780.0	8.90%	4552.1	9.54%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.079e-03	1.0000	107.0	0.53%	338.7	0.71%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.070e-03	1.0000	300.0	1.50%	850.4	1.78%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.904e-03	1.0000	109.0	0.55%	345.0	0.72%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.593e-03	1.0000	318.0	1.59%	899.3	1.88%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-3.075e-03	1.0000	116.0	0.58%	366.1	0.77%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-2.763e-03	1.0000	1197.0	5.99%	3126.0	6.55%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.591e-03	1.0000	1759.0	8.79%	4519.1	9.47%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-2.458e-03	1.0000	2416.0	12.08%	6136.3	12.86%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-2.266e-03	1.0000	1492.0	7.46%	3864.7	8.10%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.906e-03	1.0000	815.0	4.08%	2180.4	4.57%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-1.830e-03	1.0000	2601.0	13.00%	6602.4	13.84%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-1.711e-03	1.0000	640.0	3.20%	1740.1	3.65%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.662e-03	1.0000	1360.0	6.80%	3547.1	7.43%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.661e-03	1.0000	353.0	1.76%	1004.1	2.10%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.545e-03	1.0000	1388.0	6.94%	3619.7	7.59%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-9.850e-04	1.0000	2510.0	12.55%	6405.3	13.43%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-9.690e-04	1.0000	1343.0	6.71%	3522.4	7.38%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.480e-04	1.0000	507.0	2.54%	1413.4	2.96%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.890e-04	1.0000	2915.0	14.57%	7402.3	15.52%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-7.690e-04	1.0000	6035.0	30.18%	14983.1	31.40%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-7.000e-04	1.0000	1621.0	8.11%	4224.2	8.85%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-6.870e-04	1.0000	626.0	3.13%	1725.2	3.62%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-6.870e-04	1.0000	1597.0	7.99%	4165.7	8.73%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-6.530e-04	1.0000	428.0	2.14%	1216.9	2.55%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-5.510e-04	1.0000	293.0	1.47%	865.8	1.81%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.370e-04	1.0000	11.0	0.06%	66.3	0.14%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-5.280e-04	1.0000	639.0	3.19%	1765.0	3.70%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.410e-04	1.0000	1216.0	6.08%	3228.3	6.77%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-3.840e-04	1.0000	203.0	1.01%	629.8	1.32%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.780e-04	1.0000	517.0	2.58%	1457.9	3.06%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-3.670e-04	1.0000	1120.0	5.60%	2992.4	6.27%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-3.400e-04	1.0000	795.0	3.98%	2172.9	4.55%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-3.270e-04	1.0000	1506.0	7.53%	3963.0	8.31%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-2.910e-04	1.0000	783.0	3.91%	2145.1	4.50%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-2.630e-04	1.0000	266.0	1.33%	804.1	1.69%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.560e-04	1.0000	11241.0	56.21%	27505.0	57.65%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.470e-04	1.0000	769.0	3.84%	2113.9	4.43%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.470e-04	1.0000	505.0	2.53%	1434.7	3.01%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.310e-04	1.0000	1005.0	5.03%	2714.8	5.69%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.720e-04	1.0000	2770.0	13.85%	7112.7	14.91%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.570e-04	1.0000	974.0	4.87%	2645.8	5.55%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.530e-04	1.0000	1220.0	6.10%	3267.7	6.85%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-1.510e-04	1.0000	1036.0	5.18%	2803.1	5.88%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.320e-04	1.0000	13.0	0.07%	80.0	0.17%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.220e-04	1.0000	1407.0	7.03%	3744.0	7.85%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.210e-04	1.0000	374.0	1.87%	1103.1	2.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.110e-04	1.0000	220.0	1.10%	691.1	1.45%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-8.900e-05	1.0000	82.0	0.41%	304.9	0.64%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.300e-05	1.0000	26.0	0.13%	130.0	0.27%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-8.200e-05	1.0000	1577.0	7.89%	4180.3	8.76%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-7.600e-05	1.0000	541.0	2.71%	1550.0	3.25%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-7.400e-05	1.0000	204.0	1.02%	652.5	1.37%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-6.100e-05	1.0000	1092.0	5.46%	2967.4	6.22%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-6.000e-05	1.0000	1260.0	6.30%	3392.1	7.11%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-5.500e-05	1.0000	1221.0	6.11%	3296.3	6.91%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-5.300e-05	1.0000	337.0	1.69%	1017.1	2.13%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-4.500e-05	1.0000	54.0	0.27%	224.4	0.47%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-4.400e-05	1.0000	564.0	2.82%	1619.6	3.39%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-4.300e-05	1.0000	1324.0	6.62%	3562.8	7.47%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-3.800e-05	1.0000	1236.0	6.18%	3343.5	7.01%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-3.300e-05	1.0000	3751.0	18.75%	9582.7	20.09%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-3.200e-05	1.0000	1369.0	6.84%	3683.5	7.72%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-3.000e-05	1.0000	334.0	1.67%	1017.4	2.13%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.200e-05	1.0000	722.0	3.61%	2042.1	4.28%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-2.200e-05	1.0000	1998.0	9.99%	5270.4	11.05%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-2.100e-05	1.0000	1662.0	8.31%	4431.5	9.29%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-2.100e-05	1.0000	328.0	1.64%	1006.9	2.11%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-2.000e-05	1.0000	47.0	0.24%	207.3	0.43%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.700e-05	1.0000	354.0	1.77%	1080.0	2.26%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.600e-05	1.0000	1990.0	9.95%	5259.6	11.02%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.300e-05	1.0000	378.0	1.89%	1147.7	2.41%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.100e-05	1.0000	257.0	1.29%	821.9	1.72%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-1.100e-05	1.0000	258.0	1.29%	824.7	1.73%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.000e-06	1.0000	902.0	4.51%	2524.3	5.29%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-9.000e-06	1.0000	2708.0	13.54%	7062.0	14.80%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-7.000e-06	1.0000	600.0	3.00%	1745.4	3.66%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.000e-06	1.0000	1495.0	7.47%	4040.7	8.47%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-7.000e-06	1.0000	247.0	1.23%	799.3	1.68%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.000e-06	1.0000	1184.0	5.92%	3254.3	6.82%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.000e-06	1.0000	290.0	1.45%	920.3	1.93%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-5.000e-06	1.0000	238.0	1.19%	778.2	1.63%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.000e-06	1.0000	811.0	4.06%	2309.0	4.84%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.000e-06	1.0000	272.0	1.36%	879.3	1.84%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.000e-06	1.0000	279.0	1.40%	906.6	1.90%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.000e-06	1.0000	341.0	1.70%	1077.9	2.26%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-1.000e-06	1.0000	1163.0	5.82%	3236.3	6.78%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-1.000e-06	1.0000	625.0	3.12%	1846.5	3.87%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.000e-06	1.0000	415.0	2.08%	1285.5	2.69%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.000e-06	1.0000	1269.0	6.35%	3523.3	7.38%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-0.000e+00	1.0000	627.0	3.14%	1859.1	3.90%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-0.000e+00	1.0000	76.0	0.38%	327.9	0.69%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	95.0	0.47%	387.7	0.81%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	414.0	2.07%	1295.0	2.71%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	1253.0	6.26%	3503.0	7.34%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-0.000e+00	1.0000	1573.0	7.87%	4321.0	9.06%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-0.000e+00	1.0000	560.0	2.80%	1695.2	3.55%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-0.000e+00	1.0000	276.0	1.38%	922.7	1.93%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-0.000e+00	1.0000	719.0	3.60%	2128.0	4.46%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-0.000e+00	1.0000	1822.0	9.11%	4974.4	10.43%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-0.000e+00	1.0000	1172.0	5.86%	3315.4	6.95%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	2100.0	10.50%	5684.2	11.91%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-0.000e+00	1.0000	292.0	1.46%	979.6	2.05%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-0.000e+00	1.0000	402.0	2.01%	1288.5	2.70%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	46.0	0.23%	242.9	0.51%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	1024.0	5.12%	2948.9	6.18%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	3370.0	16.85%	8886.3	18.63%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-0.000e+00	1.0000	526.0	2.63%	1639.1	3.44%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	2383.0	11.92%	6440.3	13.50%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-0.000e+00	1.0000	841.0	4.21%	2496.9	5.23%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-0.000e+00	1.0000	1252.0	6.26%	3592.5	7.53%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-0.000e+00	1.0000	690.0	3.45%	2116.4	4.44%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-0.000e+00	1.0000	1812.0	9.06%	5328.1	11.17%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-0.000e+00	1.0000	729.0	3.65%	2260.0	4.74%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-0.000e+00	1.0000	2130.0	10.65%	5915.8	12.40%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	701.0	3.50%	2378.0	4.98%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	1320.0	6.60%	4355.6	9.13%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	2739.0	13.69%	7503.2	15.73%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-0.000e+00	1.0000	769.0	3.84%	2376.8	4.98%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-0.000e+00	1.0000	2188.0	10.94%	6284.3	13.17%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-0.000e+00	1.0000	2004.0	10.02%	6121.5	12.83%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	184.0	0.92%	856.4	1.80%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-0.000e+00	1.0000	2044.0	10.22%	5806.6	12.17%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-0.000e+00	1.0000	2116.0	10.58%	5942.1	12.45%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-0.000e+00	1.0000	2193.0	10.96%	6159.1	12.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	424.0	2.12%	1553.8	3.26%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	160.0	0.80%	743.3	1.56%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1466.0	7.33%	4989.7	10.46%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-0.000e+00	1.0000	1805.0	9.03%	5295.1	11.10%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	834.0	4.17%	2598.5	5.45%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-0.000e+00	1.0000	1977.0	9.88%	5775.4	12.11%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	1077.0	5.38%	3356.1	7.03%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-0.000e+00	1.0000	1693.0	8.46%	4837.6	10.14%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	2617.0	13.08%	7327.2	15.36%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-0.000e+00	1.0000	323.0	1.62%	1370.5	2.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	759.0	3.79%	2400.0	5.03%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	1337.0	6.69%	4072.4	8.54%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-0.000e+00	1.0000	865.0	4.32%	2879.6	6.04%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-0.000e+00	1.0000	206.0	1.03%	904.1	1.89%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	3684.0	18.42%	10096.6	21.16%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-0.000e+00	1.0000	1686.0	8.43%	4965.5	10.41%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	695.0	3.48%	2197.2	4.61%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	47710.1	100.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	0.2	0.00%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	7.5	0.02%