Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 19994)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47957)	% of Background Sequences with Motif
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-282	-6.499e+02	0.0000	3185.0	15.93%	3217.9	6.71%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-270	-6.236e+02	0.0000	3633.0	18.16%	4041.6	8.43%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-237	-5.471e+02	0.0000	4137.0	20.69%	5192.5	10.83%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-234	-5.399e+02	0.0000	4379.0	21.89%	5665.3	11.82%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-230	-5.311e+02	0.0000	4381.0	21.91%	5703.6	11.90%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-223	-5.138e+02	0.0000	4607.0	23.04%	6198.3	12.93%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-222	-5.114e+02	0.0000	2259.0	11.29%	2112.4	4.41%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-214	-4.940e+02	0.0000	4617.0	23.09%	6300.7	13.15%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-200	-4.628e+02	0.0000	2463.0	12.31%	2566.8	5.36%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-197	-4.544e+02	0.0000	4703.0	23.52%	6639.4	13.85%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-188	-4.336e+02	0.0000	2438.0	12.19%	2611.7	5.45%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-172	-3.966e+02	0.0000	3518.0	17.59%	4642.4	9.69%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-169	-3.902e+02	0.0000	2168.0	10.84%	2298.6	4.80%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-169	-3.899e+02	0.0000	1154.0	5.77%	790.0	1.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-154	-3.568e+02	0.0000	4720.0	23.60%	7150.8	14.92%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-150	-3.468e+02	0.0000	1593.0	7.96%	1507.3	3.15%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-150	-3.456e+02	0.0000	4093.0	20.46%	5968.8	12.45%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-131	-3.022e+02	0.0000	1059.0	5.29%	829.8	1.73%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-127	-2.937e+02	0.0000	3842.0	19.21%	5743.9	11.99%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-126	-2.915e+02	0.0000	918.0	4.59%	659.2	1.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-122	-2.818e+02	0.0000	1098.0	5.49%	928.3	1.94%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-119	-2.749e+02	0.0000	1418.0	7.09%	1429.3	2.98%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-115	-2.655e+02	0.0000	656.0	3.28%	374.3	0.78%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-108	-2.494e+02	0.0000	1178.0	5.89%	1126.3	2.35%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-94	-2.180e+02	0.0000	3473.0	17.36%	5439.2	11.35%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-88	-2.033e+02	0.0000	380.0	1.90%	153.4	0.32%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-80	-1.864e+02	0.0000	4923.0	24.62%	8666.1	18.08%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-80	-1.848e+02	0.0000	409.0	2.04%	206.9	0.43%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-77	-1.791e+02	0.0000	3930.0	19.65%	6629.2	13.83%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-76	-1.758e+02	0.0000	778.0	3.89%	712.1	1.49%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-69	-1.597e+02	0.0000	2107.0	10.54%	3100.3	6.47%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-64	-1.492e+02	0.0000	437.0	2.19%	294.4	0.61%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-62	-1.432e+02	0.0000	1068.0	5.34%	1279.9	2.67%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-60	-1.401e+02	0.0000	990.0	4.95%	1158.6	2.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-58	-1.357e+02	0.0000	2693.0	13.46%	4404.5	9.19%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-56	-1.291e+02	0.0000	189.0	0.95%	50.3	0.10%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-54	-1.259e+02	0.0000	670.0	3.35%	682.5	1.42%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-50	-1.169e+02	0.0000	1308.0	6.54%	1820.2	3.80%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-48	-1.107e+02	0.0000	2414.0	12.07%	4018.7	8.39%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-46	-1.066e+02	0.0000	1281.0	6.40%	1822.0	3.80%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-46	-1.066e+02	0.0000	1373.0	6.87%	1995.8	4.16%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-45	-1.057e+02	0.0000	288.0	1.44%	182.3	0.38%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-44	-1.031e+02	0.0000	1790.0	8.95%	2821.6	5.89%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-44	-1.026e+02	0.0000	2269.0	11.34%	3784.5	7.90%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-43	-1.007e+02	0.0000	1742.0	8.71%	2742.7	5.72%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-42	-9.675e+01	0.0000	2164.0	10.82%	3615.5	7.54%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-41	-9.541e+01	0.0000	1641.0	8.21%	2578.2	5.38%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-41	-9.472e+01	0.0000	886.0	4.43%	1158.2	2.42%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-40	-9.312e+01	0.0000	2344.0	11.72%	4012.3	8.37%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-39	-9.193e+01	0.0000	1640.0	8.20%	2599.3	5.42%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-39	-9.068e+01	0.0000	1880.0	9.40%	3086.9	6.44%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-38	-8.864e+01	0.0000	625.0	3.12%	730.9	1.53%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-38	-8.839e+01	0.0000	684.0	3.42%	831.3	1.73%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-37	-8.596e+01	0.0000	233.0	1.17%	147.1	0.31%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-36	-8.449e+01	0.0000	2022.0	10.11%	3421.4	7.14%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-36	-8.418e+01	0.0000	2913.0	14.56%	5283.1	11.02%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-36	-8.349e+01	0.0000	1675.0	8.38%	2727.9	5.69%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-35	-8.262e+01	0.0000	775.0	3.88%	1014.9	2.12%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-34	-7.947e+01	0.0000	420.0	2.10%	427.1	0.89%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-33	-7.677e+01	0.0000	3093.0	15.47%	5743.7	11.98%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-32	-7.504e+01	0.0000	3668.0	18.34%	7009.9	14.63%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-32	-7.389e+01	0.0000	1285.0	6.42%	2021.1	4.22%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-31	-7.219e+01	0.0000	1166.0	5.83%	1800.8	3.76%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-31	-7.164e+01	0.0000	1584.0	7.92%	2632.2	5.49%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-29	-6.711e+01	0.0000	3293.0	16.46%	6284.0	13.11%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-26	-6.216e+01	0.0000	877.0	4.38%	1306.3	2.73%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-26	-6.061e+01	0.0000	952.0	4.76%	1460.0	3.05%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-26	-5.994e+01	0.0000	927.0	4.63%	1415.1	2.95%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-24	-5.640e+01	0.0000	2471.0	12.35%	4629.4	9.66%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-24	-5.636e+01	0.0000	357.0	1.79%	399.7	0.83%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-24	-5.628e+01	0.0000	2358.0	11.79%	4388.3	9.16%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-24	-5.606e+01	0.0000	252.0	1.26%	235.8	0.49%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-24	-5.601e+01	0.0000	2308.0	11.54%	4284.7	8.94%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-24	-5.552e+01	0.0000	280.0	1.40%	279.1	0.58%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-24	-5.542e+01	0.0000	3965.0	19.82%	7919.1	16.52%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-23	-5.437e+01	0.0000	2064.0	10.32%	3782.5	7.89%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-22	-5.196e+01	0.0000	308.0	1.54%	334.3	0.70%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-22	-5.193e+01	0.0000	4551.0	22.75%	9287.6	19.38%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-22	-5.134e+01	0.0000	639.0	3.19%	919.9	1.92%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-21	-4.975e+01	0.0000	1966.0	9.83%	3624.0	7.56%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-21	-4.958e+01	0.0000	1951.0	9.75%	3593.3	7.50%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-20	-4.679e+01	0.0000	832.0	4.16%	1316.0	2.75%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-19	-4.478e+01	0.0000	1056.0	5.28%	1777.6	3.71%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-18	-4.324e+01	0.0000	2920.0	14.60%	5775.8	12.05%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-18	-4.305e+01	0.0000	308.0	1.54%	365.1	0.76%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-17	-3.999e+01	0.0000	1053.0	5.27%	1811.1	3.78%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-16	-3.836e+01	0.0000	1809.0	9.04%	3417.1	7.13%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-16	-3.709e+01	0.0000	2359.0	11.79%	4628.1	9.66%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-16	-3.703e+01	0.0000	2222.0	11.11%	4329.4	9.03%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-15	-3.567e+01	0.0000	1738.0	8.69%	3297.6	6.88%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-15	-3.522e+01	0.0000	3761.0	18.80%	7785.9	16.25%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-15	-3.522e+01	0.0000	2733.0	13.66%	5481.5	11.44%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-14	-3.404e+01	0.0000	1244.0	6.22%	2264.6	4.73%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-14	-3.240e+01	0.0000	1000.0	5.00%	1771.3	3.70%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-13	-3.202e+01	0.0000	1101.0	5.50%	1985.7	4.14%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-13	-3.195e+01	0.0000	1927.0	9.63%	3755.1	7.84%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-13	-3.187e+01	0.0000	924.0	4.62%	1620.0	3.38%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-13	-3.168e+01	0.0000	2464.0	12.32%	4940.7	10.31%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-13	-3.006e+01	0.0000	3056.0	15.28%	6289.8	13.12%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-13	-2.997e+01	0.0000	334.0	1.67%	468.4	0.98%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-12	-2.911e+01	0.0000	2748.0	13.74%	5615.5	11.72%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-12	-2.868e+01	0.0000	1169.0	5.85%	2164.3	4.52%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-11	-2.692e+01	0.0000	1271.0	6.35%	2402.2	5.01%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-11	-2.543e+01	0.0000	424.0	2.12%	665.7	1.39%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-10	-2.495e+01	0.0000	1884.0	9.42%	3764.5	7.85%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-10	-2.381e+01	0.0000	153.0	0.77%	176.9	0.37%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-10	-2.339e+01	0.0000	2259.0	11.29%	4623.6	9.65%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-9	-2.299e+01	0.0000	706.0	3.53%	1253.6	2.62%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-9	-2.278e+01	0.0000	1213.0	6.07%	2330.5	4.86%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-9	-2.158e+01	0.0000	1850.0	9.25%	3744.0	7.81%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-9	-2.075e+01	0.0000	3137.0	15.68%	6659.7	13.90%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-8	-2.007e+01	0.0000	567.0	2.83%	994.1	2.07%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-8	-1.976e+01	0.0000	1298.0	6.49%	2557.2	5.34%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-8	-1.931e+01	0.0000	1949.0	9.74%	4005.5	8.36%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-8	-1.920e+01	0.0000	442.0	2.21%	748.0	1.56%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-8	-1.900e+01	0.0000	733.0	3.67%	1351.3	2.82%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-8	-1.891e+01	0.0000	2320.0	11.60%	4846.6	10.11%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-8	-1.879e+01	0.0000	578.0	2.89%	1030.0	2.15%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-7	-1.830e+01	0.0000	2474.0	12.37%	5207.9	10.87%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-7	-1.782e+01	0.0000	2614.0	13.07%	5535.1	11.55%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-7	-1.781e+01	0.0000	2679.0	13.40%	5683.2	11.86%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-7	-1.777e+01	0.0000	1498.0	7.49%	3029.6	6.32%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-7	-1.760e+01	0.0000	264.0	1.32%	407.2	0.85%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-7	-1.745e+01	0.0000	80.0	0.40%	79.6	0.17%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-7	-1.688e+01	0.0000	959.0	4.79%	1861.7	3.88%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-6	-1.566e+01	0.0000	1808.0	9.04%	3760.3	7.85%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-6	-1.527e+01	0.0000	442.0	2.21%	782.8	1.63%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-6	-1.516e+01	0.0000	993.0	4.96%	1960.6	4.09%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-6	-1.516e+01	0.0000	3009.0	15.04%	6502.3	13.57%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-6	-1.503e+01	0.0000	1177.0	5.88%	2366.7	4.94%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-6	-1.423e+01	0.0000	1174.0	5.87%	2374.0	4.95%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-6	-1.416e+01	0.0000	227.0	1.14%	358.3	0.75%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-6	-1.404e+01	0.0000	1433.0	7.17%	2952.3	6.16%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-6	-1.394e+01	0.0000	1078.0	5.39%	2166.3	4.52%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-6	-1.386e+01	0.0000	7106.0	35.53%	16113.5	33.62%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-5	-1.326e+01	0.0000	3361.0	16.80%	7366.4	15.37%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-5	-1.306e+01	0.0000	1256.0	6.28%	2576.7	5.38%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-5	-1.278e+01	0.0000	329.0	1.65%	573.1	1.20%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-5	-1.274e+01	0.0000	1619.0	8.09%	3396.6	7.09%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-5	-1.264e+01	0.0000	532.0	2.66%	999.1	2.08%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-5	-1.243e+01	0.0000	653.0	3.26%	1261.4	2.63%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-5	-1.231e+01	0.0000	239.0	1.20%	395.1	0.82%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-5	-1.201e+01	0.0000	1748.0	8.74%	3704.3	7.73%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-5	-1.164e+01	0.0001	2012.0	10.06%	4313.8	9.00%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-4	-1.145e+01	0.0001	1353.0	6.77%	2825.5	5.90%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-4	-1.109e+01	0.0001	2743.0	13.71%	6005.3	12.53%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-4	-1.083e+01	0.0001	660.0	3.30%	1299.2	2.71%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-4	-1.070e+01	0.0001	771.0	3.85%	1545.0	3.22%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-4	-1.068e+01	0.0001	630.0	3.15%	1236.1	2.58%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-4	-1.065e+01	0.0001	1646.0	8.23%	3505.5	7.31%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-4	-1.021e+01	0.0002	18963.0	94.81%	45069.2	94.04%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-4	-1.015e+01	0.0002	437.0	2.19%	827.3	1.73%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-4	-1.010e+01	0.0002	495.0	2.48%	952.1	1.99%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-4	-9.848e+00	0.0003	284.0	1.42%	508.5	1.06%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-4	-9.837e+00	0.0003	329.0	1.65%	602.3	1.26%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-4	-9.800e+00	0.0003	1266.0	6.33%	2665.7	5.56%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-4	-9.731e+00	0.0003	356.0	1.78%	660.9	1.38%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-4	-9.525e+00	0.0004	378.0	1.89%	709.5	1.48%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-9.477e+00	0.0004	805.0	4.03%	1641.0	3.42%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-4	-9.461e+00	0.0004	584.0	2.92%	1154.4	2.41%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-3	-9.149e+00	0.0006	2312.0	11.56%	5071.3	10.58%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-3	-9.109e+00	0.0006	1205.0	6.02%	2543.0	5.31%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-9.049e+00	0.0007	713.0	3.56%	1444.7	3.01%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-3	-9.041e+00	0.0007	467.0	2.33%	906.2	1.89%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-3	-8.890e+00	0.0008	3218.0	16.09%	7179.6	14.98%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-3	-8.744e+00	0.0009	807.0	4.04%	1658.2	3.46%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-3	-8.741e+00	0.0009	1398.0	6.99%	2989.5	6.24%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.690e+00	0.0009	1125.0	5.62%	2372.5	4.95%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-3	-8.582e+00	0.0010	344.0	1.72%	648.6	1.35%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-8.576e+00	0.0010	1111.0	5.56%	2343.9	4.89%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-3	-8.417e+00	0.0012	254.0	1.27%	461.0	0.96%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-3	-8.416e+00	0.0012	1124.0	5.62%	2376.8	4.96%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-3	-8.366e+00	0.0012	3228.0	16.14%	7222.5	15.07%
SeqBias: G/A bias	RRRRRRRRRR	1e-3	-8.338e+00	0.0013	19992.0	99.96%	47861.0	99.87%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-8.005e+00	0.0018	2795.0	13.98%	6228.6	13.00%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-7.991e+00	0.0018	173.0	0.86%	297.6	0.62%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-3	-7.908e+00	0.0019	465.0	2.33%	918.4	1.92%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-3	-7.853e+00	0.0020	2691.0	13.46%	5992.5	12.50%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-3	-7.514e+00	0.0028	189.0	0.95%	334.0	0.70%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-3	-7.225e+00	0.0037	1330.0	6.65%	2874.7	6.00%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-3	-7.217e+00	0.0037	2004.0	10.02%	4423.6	9.23%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-3	-7.069e+00	0.0043	1201.0	6.00%	2584.1	5.39%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-3	-7.046e+00	0.0044	364.0	1.82%	711.8	1.49%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-2	-6.866e+00	0.0052	2487.0	12.44%	5556.0	11.59%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-2	-6.841e+00	0.0053	755.0	3.77%	1580.6	3.30%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.834e+00	0.0053	1649.0	8.24%	3617.9	7.55%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-2	-6.747e+00	0.0058	3287.0	16.43%	7426.0	15.50%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-2	-6.707e+00	0.0060	414.0	2.07%	825.7	1.72%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-6.664e+00	0.0062	1155.0	5.78%	2490.3	5.20%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-2	-6.609e+00	0.0065	1356.0	6.78%	2951.4	6.16%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-2	-6.497e+00	0.0073	3122.0	15.61%	7051.1	14.71%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-6.477e+00	0.0074	225.0	1.12%	420.1	0.88%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-6.412e+00	0.0078	855.0	4.28%	1815.3	3.79%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-2	-6.406e+00	0.0078	190.0	0.95%	348.0	0.73%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-2	-6.344e+00	0.0083	357.0	1.79%	706.4	1.47%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-2	-6.190e+00	0.0096	1009.0	5.04%	2170.4	4.53%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-2	-5.985e+00	0.0118	2129.0	10.64%	4757.0	9.93%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-5.852e+00	0.0134	110.0	0.55%	187.6	0.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-5.811e+00	0.0139	498.0	2.49%	1026.2	2.14%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-2	-5.771e+00	0.0144	383.0	1.92%	772.7	1.61%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.598e+00	0.0170	235.0	1.18%	452.0	0.94%
SeqBias: CG bias	SSSSSSSSSS	1e-2	-5.585e+00	0.0171	13304.0	66.52%	31366.0	65.45%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-2	-5.561e+00	0.0175	196.0	0.98%	369.8	0.77%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-2	-5.500e+00	0.0185	498.0	2.49%	1032.3	2.15%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-5.474e+00	0.0189	1411.0	7.05%	3113.7	6.50%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.444e+00	0.0194	1825.0	9.12%	4072.0	8.50%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-5.443e+00	0.0194	1056.0	5.28%	2298.2	4.80%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-2	-5.322e+00	0.0217	182.0	0.91%	342.5	0.71%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-2	-5.299e+00	0.0220	4094.0	20.47%	9393.8	19.60%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-2	-5.019e+00	0.0290	641.0	3.21%	1364.8	2.85%
SeqBias: CA-repeat	CACACACACA	1e-2	-5.017e+00	0.0290	8335.0	41.68%	19479.9	40.65%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-4.990e+00	0.0296	6070.0	30.35%	14088.2	29.40%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-2	-4.798e+00	0.0357	757.0	3.79%	1633.3	3.41%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-2	-4.792e+00	0.0357	1130.0	5.65%	2488.1	5.19%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-4.774e+00	0.0362	542.0	2.71%	1147.0	2.39%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-2	-4.674e+00	0.0398	289.0	1.44%	583.2	1.22%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-2	-4.665e+00	0.0400	1103.0	5.51%	2430.0	5.07%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.642e+00	0.0408	1140.0	5.70%	2516.1	5.25%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-2	-4.620e+00	0.0415	469.0	2.34%	985.5	2.06%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-4.603e+00	0.0420	5.0	0.03%	1.6	0.00%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-4.584e+00	0.0426	533.0	2.67%	1130.7	2.36%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-1	-4.543e+00	0.0442	3798.0	18.99%	8738.4	18.23%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-4.465e+00	0.0476	209.0	1.04%	411.3	0.86%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-4.439e+00	0.0486	1489.0	7.45%	3331.7	6.95%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-4.334e+00	0.0537	1682.0	8.41%	3784.7	7.90%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-4.248e+00	0.0583	484.0	2.42%	1027.9	2.14%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-1	-4.233e+00	0.0589	37.0	0.18%	54.8	0.11%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e-1	-4.214e+00	0.0598	171.0	0.85%	332.8	0.69%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-1	-4.211e+00	0.0598	902.0	4.51%	1982.2	4.14%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-4.201e+00	0.0601	88.0	0.44%	156.3	0.33%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-1	-4.177e+00	0.0612	690.0	3.45%	1497.2	3.12%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-1	-4.168e+00	0.0616	291.0	1.46%	596.9	1.25%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-1	-4.139e+00	0.0630	1486.0	7.43%	3336.6	6.96%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-1	-4.120e+00	0.0640	406.0	2.03%	855.0	1.78%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-1	-4.072e+00	0.0669	200.0	1.00%	397.9	0.83%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1	-3.962e+00	0.0743	1567.0	7.83%	3532.7	7.37%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-1	-3.948e+00	0.0751	84.0	0.42%	150.0	0.31%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-1	-3.911e+00	0.0775	439.0	2.20%	933.6	1.95%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-3.886e+00	0.0792	616.0	3.08%	1336.4	2.79%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-3.883e+00	0.0792	2461.0	12.31%	5628.1	11.74%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-1	-3.861e+00	0.0806	446.0	2.23%	950.0	1.98%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-3.856e+00	0.0806	224.0	1.12%	453.5	0.95%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-1	-3.854e+00	0.0806	209.0	1.04%	420.0	0.88%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-3.838e+00	0.0814	104.0	0.52%	193.9	0.40%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-1	-3.744e+00	0.0891	2670.0	13.35%	6127.4	12.79%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-1	-3.733e+00	0.0896	274.0	1.37%	566.2	1.18%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-3.726e+00	0.0899	1572.0	7.86%	3554.2	7.42%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-3.720e+00	0.0901	336.0	1.68%	705.5	1.47%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-1	-3.705e+00	0.0911	10485.0	52.42%	24726.2	51.59%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-1	-3.694e+00	0.0917	4085.0	20.42%	9470.6	19.76%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.648e+00	0.0957	736.0	3.68%	1618.5	3.38%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-1	-3.633e+00	0.0967	3246.0	16.23%	7491.3	15.63%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-1	-3.571e+00	0.1025	24.0	0.12%	33.1	0.07%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.492e+00	0.1105	3021.0	15.10%	6969.4	14.54%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-3.467e+00	0.1128	1363.0	6.82%	3078.8	6.42%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-1	-3.440e+00	0.1155	975.0	4.88%	2177.9	4.54%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-1	-3.433e+00	0.1158	296.0	1.48%	621.9	1.30%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.402e+00	0.1191	1842.0	9.21%	4201.6	8.77%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-1	-3.370e+00	0.1224	346.0	1.73%	735.1	1.53%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-1	-3.312e+00	0.1292	1846.0	9.23%	4215.7	8.80%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-1	-3.306e+00	0.1295	532.0	2.66%	1160.8	2.42%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-1	-3.234e+00	0.1386	2484.0	12.42%	5719.0	11.93%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-1	-3.141e+00	0.1515	315.0	1.57%	670.6	1.40%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-3.134e+00	0.1520	1738.0	8.69%	3971.6	8.29%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-1	-3.116e+00	0.1542	2357.0	11.79%	5427.3	11.32%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-1	-3.099e+00	0.1562	522.0	2.61%	1143.8	2.39%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-3.088e+00	0.1574	598.0	2.99%	1318.2	2.75%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.085e+00	0.1574	1231.0	6.16%	2787.2	5.82%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-3.069e+00	0.1593	1407.0	7.03%	3199.1	6.68%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-3.056e+00	0.1608	40.0	0.20%	67.3	0.14%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-3.034e+00	0.1637	11.0	0.06%	12.4	0.03%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-1	-3.010e+00	0.1671	2956.0	14.78%	6847.4	14.29%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e-1	-3.002e+00	0.1678	199.0	1.00%	412.0	0.86%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e-1	-2.993e+00	0.1687	256.0	1.28%	541.0	1.13%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-1	-2.971e+00	0.1719	766.0	3.83%	1710.8	3.57%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-2.920e+00	0.1801	2180.0	10.90%	5022.2	10.48%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e-1	-2.910e+00	0.1813	29.0	0.14%	46.3	0.10%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-1	-2.882e+00	0.1857	759.0	3.79%	1697.6	3.54%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-1	-2.865e+00	0.1883	3799.0	19.00%	8853.8	18.47%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-2.846e+00	0.1913	761.0	3.81%	1703.5	3.55%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-2.816e+00	0.1965	723.0	3.62%	1616.7	3.37%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-1	-2.763e+00	0.2063	4649.0	23.24%	10879.1	22.70%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.760e+00	0.2063	1412.0	7.06%	3226.4	6.73%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.751e+00	0.2074	28.0	0.14%	45.3	0.09%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-1	-2.749e+00	0.2074	382.0	1.91%	832.5	1.74%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-1	-2.716e+00	0.2132	4.0	0.02%	2.7	0.01%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-2.709e+00	0.2141	168.0	0.84%	348.9	0.73%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-2.694e+00	0.2165	1005.0	5.03%	2277.0	4.75%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-2.628e+00	0.2304	1311.0	6.55%	2996.2	6.25%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-1	-2.625e+00	0.2304	530.0	2.65%	1176.5	2.45%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-1	-2.607e+00	0.2336	476.0	2.38%	1052.1	2.20%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e-1	-2.574e+00	0.2408	854.0	4.27%	1930.7	4.03%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-1	-2.561e+00	0.2430	43.0	0.21%	77.0	0.16%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-1	-2.551e+00	0.2447	394.0	1.97%	865.7	1.81%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.535e+00	0.2478	362.0	1.81%	792.3	1.65%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e-1	-2.476e+00	0.2618	68.0	0.34%	131.7	0.27%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-2.460e+00	0.2651	141.0	0.70%	292.0	0.61%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-1	-2.459e+00	0.2651	477.0	2.38%	1059.7	2.21%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-2.457e+00	0.2651	257.0	1.29%	554.7	1.16%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-2.425e+00	0.2719	600.0	3.00%	1345.9	2.81%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e-1	-2.413e+00	0.2744	374.0	1.87%	823.7	1.72%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-1	-2.404e+00	0.2759	3946.0	19.73%	9240.2	19.28%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-1	-2.403e+00	0.2759	455.0	2.27%	1010.8	2.11%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.391e+00	0.2776	3839.0	19.20%	8987.3	18.75%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.357e+00	0.2862	308.0	1.54%	673.9	1.41%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-2.349e+00	0.2877	443.0	2.21%	984.0	2.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-1	-2.344e+00	0.2882	1219.0	6.09%	2795.6	5.83%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-1	-2.331e+00	0.2909	140.0	0.70%	292.6	0.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.306e+00	0.2974	499.0	2.50%	1115.8	2.33%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-2.288e+00	0.3017	161.0	0.80%	340.1	0.71%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-2.282e+00	0.3027	420.0	2.10%	933.1	1.95%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-2.261e+00	0.3082	544.0	2.72%	1221.2	2.55%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-2.225e+00	0.3184	1057.0	5.29%	2422.0	5.05%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-2.215e+00	0.3206	2416.0	12.08%	5628.0	11.74%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-2.186e+00	0.3290	378.0	1.89%	839.7	1.75%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.150e+00	0.3398	106.0	0.53%	219.5	0.46%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.144e+00	0.3408	1417.0	7.08%	3272.2	6.83%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.139e+00	0.3413	4244.0	21.22%	9973.7	20.81%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-2.136e+00	0.3414	539.0	2.70%	1214.3	2.53%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-2.135e+00	0.3414	657.0	3.28%	1489.8	3.11%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.130e+00	0.3414	1521.0	7.61%	3518.9	7.34%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-2.108e+00	0.3478	4336.0	21.68%	10195.0	21.27%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.105e+00	0.3478	2461.0	12.31%	5742.7	11.98%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.097e+00	0.3495	697.0	3.48%	1584.9	3.31%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-2.091e+00	0.3505	2798.0	13.99%	6542.0	13.65%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-2.069e+00	0.3571	133.0	0.66%	281.3	0.59%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.069e+00	0.3571	11672.0	58.36%	27739.3	57.88%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-2.027e+00	0.3705	1172.0	5.86%	2702.8	5.64%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-2.019e+00	0.3721	1261.0	6.30%	2912.8	6.08%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.998e+00	0.3789	120.0	0.60%	253.1	0.53%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.995e+00	0.3789	1943.0	9.71%	4524.4	9.44%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.978e+00	0.3844	40.0	0.20%	76.2	0.16%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.960e+00	0.3901	173.0	0.86%	374.7	0.78%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.920e+00	0.4049	5848.0	29.24%	13819.8	28.84%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.901e+00	0.4112	2981.0	14.90%	6993.4	14.59%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.901e+00	0.4112	4798.0	23.99%	11317.2	23.61%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.886e+00	0.4148	34.0	0.17%	64.5	0.13%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-1.879e+00	0.4166	40.0	0.20%	77.3	0.16%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.870e+00	0.4193	946.0	4.73%	2179.6	4.55%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.869e+00	0.4193	1174.0	5.87%	2716.8	5.67%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.863e+00	0.4196	317.0	1.58%	708.9	1.48%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-1.855e+00	0.4216	500.0	2.50%	1134.9	2.37%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-1.831e+00	0.4309	624.0	3.12%	1425.7	2.97%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.787e+00	0.4490	1160.0	5.80%	2688.7	5.61%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-1.781e+00	0.4501	600.0	3.00%	1371.5	2.86%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-1.770e+00	0.4539	424.0	2.12%	960.0	2.00%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.760e+00	0.4570	19963.0	99.81%	47816.5	99.77%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.746e+00	0.4623	921.0	4.61%	2127.2	4.44%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.738e+00	0.4646	1057.0	5.29%	2448.2	5.11%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.737e+00	0.4646	57.0	0.29%	117.0	0.24%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.731e+00	0.4653	182.0	0.91%	400.1	0.83%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-1.720e+00	0.4691	557.0	2.79%	1273.1	2.66%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.711e+00	0.4719	453.0	2.27%	1030.1	2.15%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.663e+00	0.4935	465.0	2.33%	1060.9	2.21%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.647e+00	0.5002	5300.0	26.50%	12544.2	26.17%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.631e+00	0.5067	109.0	0.55%	235.6	0.49%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.628e+00	0.5070	1777.0	8.88%	4160.0	8.68%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.623e+00	0.5083	173.0	0.86%	382.6	0.80%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.613e+00	0.5120	1077.0	5.38%	2503.2	5.22%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-1.598e+00	0.5181	200.0	1.00%	445.7	0.93%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.597e+00	0.5181	124.0	0.62%	270.8	0.57%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.596e+00	0.5181	222.0	1.11%	496.3	1.04%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.594e+00	0.5181	19358.0	96.79%	46324.5	96.66%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.587e+00	0.5182	834.0	4.17%	1931.7	4.03%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-1.582e+00	0.5191	14960.0	74.80%	35701.1	74.49%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.578e+00	0.5197	647.0	3.23%	1491.5	3.11%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.559e+00	0.5284	458.0	2.29%	1048.4	2.19%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.546e+00	0.5339	1917.0	9.59%	4498.6	9.39%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.538e+00	0.5368	2935.0	14.67%	6919.3	14.44%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.531e+00	0.5389	73.0	0.36%	155.7	0.32%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-1.523e+00	0.5418	1339.0	6.69%	3129.6	6.53%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.512e+00	0.5462	3371.0	16.86%	7960.8	16.61%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.493e+00	0.5553	547.0	2.73%	1260.7	2.63%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-1.493e+00	0.5553	339.0	1.70%	772.3	1.61%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.493e+00	0.5553	415.0	2.08%	950.9	1.98%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.481e+00	0.5574	3116.0	15.58%	7356.7	15.35%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.450e+00	0.5737	375.0	1.88%	858.6	1.79%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-1.449e+00	0.5737	4454.0	22.27%	10550.4	22.01%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.445e+00	0.5738	208.0	1.04%	468.7	0.98%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-1.441e+00	0.5742	466.0	2.33%	1072.3	2.24%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-1.439e+00	0.5742	752.0	3.76%	1746.5	3.64%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-1.431e+00	0.5772	276.0	1.38%	627.7	1.31%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.428e+00	0.5772	355.0	1.77%	812.8	1.70%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.413e+00	0.5845	202.0	1.01%	455.8	0.95%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.395e+00	0.5937	154.0	0.77%	344.6	0.72%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.394e+00	0.5937	188.0	0.94%	423.5	0.88%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.385e+00	0.5964	1187.0	5.93%	2779.4	5.80%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.364e+00	0.6075	748.0	3.74%	1741.7	3.63%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.363e+00	0.6075	304.0	1.52%	695.4	1.45%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-1.356e+00	0.6093	4.0	0.02%	5.2	0.01%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.344e+00	0.6153	824.0	4.12%	1922.4	4.01%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.339e+00	0.6167	6.0	0.03%	9.6	0.02%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.329e+00	0.6209	1587.0	7.94%	3733.1	7.79%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.327e+00	0.6209	507.0	2.54%	1174.4	2.45%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.327e+00	0.6209	3216.0	16.08%	7612.1	15.88%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.306e+00	0.6308	204.0	1.02%	463.5	0.97%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.291e+00	0.6389	793.0	3.96%	1852.7	3.87%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.281e+00	0.6432	2637.0	13.18%	6237.9	13.02%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-1.277e+00	0.6442	2419.0	12.10%	5718.8	11.93%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.277e+00	0.6442	728.0	3.64%	1699.6	3.55%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.260e+00	0.6525	955.0	4.78%	2238.3	4.67%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.258e+00	0.6525	332.0	1.66%	765.9	1.60%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.250e+00	0.6557	108.0	0.54%	241.3	0.50%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.235e+00	0.6638	767.0	3.84%	1794.8	3.75%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.224e+00	0.6693	572.0	2.86%	1333.5	2.78%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-1.206e+00	0.6796	114.0	0.57%	256.2	0.53%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.196e+00	0.6849	3063.0	15.32%	7263.3	15.16%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-1.186e+00	0.6904	2546.0	12.73%	6031.6	12.59%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.165e+00	0.7033	1726.0	8.63%	4079.7	8.51%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.161e+00	0.7042	853.0	4.26%	2003.1	4.18%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.156e+00	0.7062	1216.0	6.08%	2866.9	5.98%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-1.150e+00	0.7084	574.0	2.87%	1342.7	2.80%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.149e+00	0.7084	432.0	2.16%	1006.1	2.10%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.146e+00	0.7084	994.0	4.97%	2339.1	4.88%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.142e+00	0.7084	115.0	0.57%	260.0	0.54%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.142e+00	0.7084	115.0	0.57%	260.0	0.54%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-1.141e+00	0.7084	540.0	2.70%	1262.5	2.63%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-1.141e+00	0.7084	2405.0	12.03%	5700.3	11.89%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.132e+00	0.7091	1303.0	6.51%	3075.1	6.42%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.129e+00	0.7101	4099.0	20.50%	9746.5	20.34%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.127e+00	0.7101	761.0	3.81%	1787.8	3.73%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.123e+00	0.7106	548.0	2.74%	1282.3	2.68%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-1.123e+00	0.7106	401.0	2.00%	934.6	1.95%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-1.116e+00	0.7125	625.0	3.12%	1465.9	3.06%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.111e+00	0.7145	67.0	0.34%	149.4	0.31%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.097e+00	0.7226	2790.0	13.95%	6624.9	13.82%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.093e+00	0.7241	30.0	0.15%	64.3	0.13%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.089e+00	0.7253	292.0	1.46%	678.9	1.42%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-1.085e+00	0.7259	131.0	0.66%	299.5	0.62%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.084e+00	0.7259	3255.0	16.28%	7736.2	16.14%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.082e+00	0.7259	1186.0	5.93%	2801.8	5.85%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.077e+00	0.7273	1567.0	7.83%	3709.9	7.74%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.074e+00	0.7274	304.0	1.52%	707.6	1.48%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.072e+00	0.7274	2169.0	10.85%	5145.4	10.74%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.069e+00	0.7280	237.0	1.19%	549.4	1.15%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.067e+00	0.7280	1138.0	5.69%	2688.6	5.61%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.063e+00	0.7284	592.0	2.96%	1390.1	2.90%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.056e+00	0.7322	435.0	2.17%	1018.4	2.13%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.051e+00	0.7341	2718.0	13.59%	6458.1	13.48%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.051e+00	0.7341	445.0	2.23%	1042.5	2.18%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.050e+00	0.7341	3325.0	16.62%	7908.7	16.50%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.049e+00	0.7341	1244.0	6.22%	2942.7	6.14%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.047e+00	0.7341	190.0	0.95%	439.3	0.92%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.045e+00	0.7341	706.0	3.53%	1662.0	3.47%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.043e+00	0.7341	184.0	0.92%	425.4	0.89%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.038e+00	0.7341	829.0	4.15%	1955.3	4.08%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.036e+00	0.7341	291.0	1.46%	678.0	1.41%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.034e+00	0.7341	2002.0	10.01%	4751.1	9.91%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.007e+00	0.7502	2811.0	14.06%	6686.1	13.95%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.003e+00	0.7512	78.0	0.39%	177.8	0.37%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-1.000e+00	0.7518	66.0	0.33%	149.2	0.31%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-9.980e-01	0.7519	270.0	1.35%	630.2	1.32%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-9.794e-01	0.7643	1042.0	5.21%	2467.4	5.15%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-9.737e-01	0.7670	1860.0	9.30%	4419.8	9.22%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.590e-01	0.7767	109.0	0.55%	251.2	0.52%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.550e-01	0.7780	449.0	2.25%	1057.9	2.21%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-9.528e-01	0.7781	916.0	4.58%	2169.6	4.53%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-9.475e-01	0.7805	188.0	0.94%	438.9	0.92%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-9.346e-01	0.7889	1125.0	5.62%	2669.8	5.57%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-9.313e-01	0.7898	3109.0	15.54%	7409.5	15.46%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-9.270e-01	0.7914	67.0	0.34%	153.2	0.32%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-9.246e-01	0.7917	683.0	3.42%	1616.2	3.37%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-9.208e-01	0.7930	1062.0	5.31%	2520.3	5.26%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-9.048e-01	0.8040	2011.0	10.05%	4788.8	9.99%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-8.980e-01	0.8078	316.0	1.58%	744.1	1.55%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-8.838e-01	0.8176	2209.0	11.04%	5264.1	10.98%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-8.815e-01	0.8176	4.0	0.02%	7.9	0.02%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-8.704e-01	0.8250	118.0	0.59%	275.3	0.57%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-8.685e-01	0.8250	581.0	2.90%	1377.1	2.87%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-8.680e-01	0.8250	401.0	2.00%	948.4	1.98%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-8.625e-01	0.8263	120.0	0.60%	281.0	0.59%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-8.393e-01	0.8439	2571.0	12.86%	6136.4	12.80%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-8.259e-01	0.8535	1282.0	6.41%	3055.4	6.38%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-8.223e-01	0.8548	1053.0	5.27%	2508.7	5.23%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-8.218e-01	0.8548	634.0	3.17%	1507.6	3.15%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-8.169e-01	0.8558	566.0	2.83%	1345.9	2.81%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-8.164e-01	0.8558	1706.0	8.53%	4070.4	8.49%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-8.092e-01	0.8588	706.0	3.53%	1680.4	3.51%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-8.077e-01	0.8588	337.0	1.69%	799.1	1.67%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-7.889e-01	0.8727	4728.0	23.64%	11308.5	23.60%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-7.817e-01	0.8772	1170.0	5.85%	2792.3	5.83%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-7.816e-01	0.8772	1799.0	9.00%	4297.8	8.97%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-7.758e-01	0.8787	2.0	0.01%	3.3	0.01%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-7.710e-01	0.8812	1503.0	7.51%	3590.5	7.49%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-7.629e-01	0.8865	627.0	3.14%	1495.1	3.12%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.610e-01	0.8865	335.0	1.68%	797.2	1.66%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-7.505e-01	0.8938	1900.0	9.50%	4543.3	9.48%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.483e-01	0.8940	2315.0	11.58%	5537.4	11.55%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-7.423e-01	0.8975	73.0	0.36%	172.4	0.36%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-7.390e-01	0.8987	114.0	0.57%	270.5	0.56%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-7.362e-01	0.8994	377.0	1.88%	899.7	1.88%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-7.322e-01	0.9011	139.0	0.69%	330.4	0.69%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-7.241e-01	0.9066	3747.0	18.73%	8971.2	18.72%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-7.185e-01	0.9098	1109.0	5.54%	2653.1	5.54%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-7.112e-01	0.9147	246.0	1.23%	587.1	1.23%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-7.080e-01	0.9157	552.0	2.76%	1321.0	2.76%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.976e-01	0.9234	906.0	4.53%	2169.6	4.53%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-6.944e-01	0.9246	1097.0	5.49%	2627.6	5.48%
Tal1	CATCTG	1e0	-6.914e-01	0.9254	2199.0	11.00%	5268.5	10.99%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-6.893e-01	0.9256	2453.0	12.26%	5877.3	12.26%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-6.800e-01	0.9324	2265.0	11.33%	5428.9	11.33%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-6.792e-01	0.9324	322.0	1.61%	771.6	1.61%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-6.790e-01	0.9324	1027.0	5.13%	2461.4	5.14%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-6.743e-01	0.9324	1003.0	5.01%	2404.3	5.02%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-6.742e-01	0.9324	33.0	0.17%	78.1	0.16%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-6.518e-01	0.9496	688.0	3.44%	1651.6	3.45%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-6.500e-01	0.9496	1908.0	9.54%	4577.8	9.55%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-6.371e-01	0.9598	542.0	2.71%	1302.2	2.72%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-6.303e-01	0.9644	242.0	1.21%	582.8	1.22%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-6.303e-01	0.9644	548.0	2.74%	1317.1	2.75%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-6.110e-01	0.9794	678.0	3.39%	1631.5	3.40%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-5.822e-01	1.0000	750.0	3.75%	1807.1	3.77%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-5.792e-01	1.0000	970.0	4.85%	2336.9	4.88%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-5.765e-01	1.0000	2183.0	10.91%	5249.6	10.95%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-5.646e-01	1.0000	138.0	0.69%	335.2	0.70%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-5.606e-01	1.0000	7755.0	38.77%	18616.3	38.84%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-5.592e-01	1.0000	50.0	0.25%	122.5	0.26%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-5.592e-01	1.0000	3285.0	16.43%	7897.6	16.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.570e-01	1.0000	1082.0	5.41%	2608.6	5.44%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-5.490e-01	1.0000	283.0	1.42%	686.7	1.43%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-5.436e-01	1.0000	1412.0	7.06%	3403.4	7.10%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-5.396e-01	1.0000	2196.0	10.98%	5287.8	11.03%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-5.336e-01	1.0000	477.0	2.38%	1155.5	2.41%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-5.321e-01	1.0000	9.0	0.04%	22.1	0.05%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.273e-01	1.0000	224.0	1.12%	545.7	1.14%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-5.272e-01	1.0000	698.0	3.49%	1688.6	3.52%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-5.204e-01	1.0000	21.0	0.10%	52.6	0.11%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-5.203e-01	1.0000	2914.0	14.57%	7015.0	14.64%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-5.201e-01	1.0000	70.0	0.35%	172.8	0.36%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-5.100e-01	1.0000	329.0	1.65%	800.9	1.67%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.078e-01	1.0000	283.0	1.42%	689.1	1.44%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-5.024e-01	1.0000	511.0	2.56%	1241.0	2.59%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-5.007e-01	1.0000	320.0	1.60%	779.4	1.63%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-4.938e-01	1.0000	357.0	1.79%	869.1	1.81%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-4.925e-01	1.0000	1824.0	9.12%	4402.6	9.19%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-4.870e-01	1.0000	1004.0	5.02%	2430.4	5.07%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.851e-01	1.0000	267.0	1.33%	652.1	1.36%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-4.849e-01	1.0000	348.0	1.74%	848.6	1.77%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-4.832e-01	1.0000	362.0	1.81%	882.5	1.84%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-4.830e-01	1.0000	1669.0	8.34%	4031.9	8.41%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-4.751e-01	1.0000	2110.0	10.55%	5094.0	10.63%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-4.603e-01	1.0000	997.0	4.98%	2417.3	5.04%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-4.560e-01	1.0000	663.0	3.31%	1612.9	3.37%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-4.553e-01	1.0000	808.0	4.04%	1962.7	4.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.493e-01	1.0000	324.0	1.62%	793.6	1.66%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-4.462e-01	1.0000	689.0	3.45%	1676.5	3.50%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-4.389e-01	1.0000	219.0	1.09%	539.5	1.13%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-4.387e-01	1.0000	641.0	3.21%	1561.2	3.26%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-4.336e-01	1.0000	929.0	4.64%	2257.6	4.71%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-4.267e-01	1.0000	210.0	1.05%	518.5	1.08%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-4.244e-01	1.0000	394.0	1.97%	965.4	2.01%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-4.208e-01	1.0000	83.0	0.41%	208.2	0.43%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-4.179e-01	1.0000	2827.0	14.13%	6830.8	14.25%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-4.161e-01	1.0000	778.0	3.89%	1895.1	3.95%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-4.117e-01	1.0000	1638.0	8.19%	3970.1	8.28%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-4.087e-01	1.0000	166.0	0.83%	412.9	0.86%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-4.081e-01	1.0000	1159.0	5.79%	2816.4	5.88%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-4.066e-01	1.0000	510.0	2.55%	1248.6	2.61%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-4.029e-01	1.0000	284.0	1.42%	700.1	1.46%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-3.917e-01	1.0000	1053.0	5.27%	2563.9	5.35%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-3.861e-01	1.0000	292.0	1.46%	721.7	1.51%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-3.849e-01	1.0000	3544.0	17.72%	8563.7	17.87%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-3.813e-01	1.0000	1015.0	5.08%	2473.5	5.16%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.804e-01	1.0000	465.0	2.33%	1142.4	2.38%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.804e-01	1.0000	465.0	2.33%	1142.4	2.38%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-3.723e-01	1.0000	97.0	0.48%	245.1	0.51%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.710e-01	1.0000	717.0	3.58%	1754.3	3.66%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-3.707e-01	1.0000	138.0	0.69%	346.0	0.72%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-3.693e-01	1.0000	116.0	0.58%	292.7	0.61%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-3.687e-01	1.0000	13.0	0.07%	35.5	0.07%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-3.659e-01	1.0000	503.0	2.51%	1236.6	2.58%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-3.657e-01	1.0000	1826.0	9.13%	4433.5	9.25%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.582e-01	1.0000	189.0	0.95%	473.0	0.99%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.498e-01	1.0000	2885.0	14.42%	6988.5	14.58%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-3.461e-01	1.0000	26.0	0.13%	69.9	0.15%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-3.449e-01	1.0000	180.0	0.90%	451.8	0.94%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-3.413e-01	1.0000	744.0	3.72%	1824.4	3.81%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-3.369e-01	1.0000	70.0	0.35%	180.5	0.38%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-3.357e-01	1.0000	1189.0	5.95%	2902.1	6.06%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-3.352e-01	1.0000	383.0	1.92%	948.5	1.98%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-3.348e-01	1.0000	596.0	2.98%	1466.3	3.06%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-3.324e-01	1.0000	2603.0	13.01%	6315.0	13.18%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-3.272e-01	1.0000	140.0	0.70%	354.4	0.74%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.257e-01	1.0000	463.0	2.31%	1144.9	2.39%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.223e-01	1.0000	189.0	0.95%	475.1	0.99%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-3.221e-01	1.0000	1006.0	5.03%	2462.1	5.14%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-3.210e-01	1.0000	1275.0	6.38%	3113.7	6.50%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-3.179e-01	1.0000	1386.0	6.93%	3382.1	7.06%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-3.172e-01	1.0000	1549.0	7.75%	3776.2	7.88%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-3.132e-01	1.0000	2151.0	10.76%	5230.8	10.91%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.085e-01	1.0000	40.0	0.20%	106.2	0.22%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-3.055e-01	1.0000	377.0	1.88%	937.4	1.96%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-3.006e-01	1.0000	878.0	4.39%	2156.4	4.50%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-2.985e-01	1.0000	1928.0	9.64%	4696.3	9.80%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-2.978e-01	1.0000	945.0	4.72%	2319.7	4.84%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.884e-01	1.0000	1127.0	5.63%	2762.2	5.76%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-2.877e-01	1.0000	2126.0	10.63%	5177.6	10.80%
SeqBias: TA-repeat	TATATATATA	1e0	-2.830e-01	1.0000	4236.0	21.18%	10262.8	21.41%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-2.799e-01	1.0000	126.0	0.63%	323.8	0.68%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-2.772e-01	1.0000	22.0	0.11%	61.1	0.13%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.764e-01	1.0000	1601.0	8.00%	3912.0	8.16%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-2.764e-01	1.0000	660.0	3.30%	1631.3	3.40%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.757e-01	1.0000	1493.0	7.46%	3651.6	7.62%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.723e-01	1.0000	11.0	0.06%	32.2	0.07%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.684e-01	1.0000	431.0	2.15%	1074.2	2.24%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-2.644e-01	1.0000	1474.0	7.37%	3608.2	7.53%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-2.608e-01	1.0000	5971.0	29.85%	14444.0	30.14%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.599e-01	1.0000	4112.0	20.56%	9973.3	20.81%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-2.562e-01	1.0000	1896.0	9.48%	4631.1	9.66%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-2.552e-01	1.0000	373.0	1.86%	934.7	1.95%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-2.513e-01	1.0000	1020.0	5.10%	2511.5	5.24%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.505e-01	1.0000	19949.0	99.74%	47815.9	99.77%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.502e-01	1.0000	123.0	0.61%	318.1	0.66%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-2.444e-01	1.0000	1751.0	8.76%	4284.8	8.94%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-2.440e-01	1.0000	1734.0	8.67%	4243.8	8.86%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.370e-01	1.0000	239.0	1.20%	607.5	1.27%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-2.365e-01	1.0000	10231.0	51.15%	24676.6	51.49%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.356e-01	1.0000	260.0	1.30%	659.8	1.38%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.289e-01	1.0000	325.0	1.62%	820.3	1.71%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-2.230e-01	1.0000	1439.0	7.20%	3536.0	7.38%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.220e-01	1.0000	987.0	4.93%	2438.7	5.09%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-2.191e-01	1.0000	1481.0	7.41%	3638.3	7.59%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-2.177e-01	1.0000	9032.0	45.16%	21813.6	45.52%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-2.168e-01	1.0000	2721.0	13.61%	6638.6	13.85%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-2.150e-01	1.0000	69.0	0.34%	185.6	0.39%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-2.104e-01	1.0000	826.0	4.13%	2049.7	4.28%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.092e-01	1.0000	325.0	1.62%	823.8	1.72%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-2.074e-01	1.0000	515.0	2.57%	1290.6	2.69%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.066e-01	1.0000	1717.0	8.58%	4214.8	8.79%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-2.004e-01	1.0000	337.0	1.69%	854.8	1.78%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.947e-01	1.0000	29.0	0.14%	83.9	0.18%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.915e-01	1.0000	772.0	3.86%	1922.7	4.01%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.886e-01	1.0000	3.0	0.01%	11.6	0.02%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.857e-01	1.0000	1509.0	7.54%	3717.6	7.76%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.848e-01	1.0000	723.0	3.62%	1804.2	3.76%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.810e-01	1.0000	15.0	0.07%	46.0	0.10%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.737e-01	1.0000	995.0	4.98%	2471.7	5.16%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.727e-01	1.0000	1224.0	6.12%	3029.9	6.32%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.719e-01	1.0000	276.0	1.38%	708.4	1.48%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.705e-01	1.0000	330.0	1.65%	842.7	1.76%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.701e-01	1.0000	148.0	0.74%	389.3	0.81%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.674e-01	1.0000	2308.0	11.54%	5661.5	11.81%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.624e-01	1.0000	1526.0	7.63%	3767.8	7.86%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.611e-01	1.0000	394.0	1.97%	1002.1	2.09%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.600e-01	1.0000	402.0	2.01%	1022.7	2.13%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-1.583e-01	1.0000	98.0	0.49%	264.7	0.55%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.553e-01	1.0000	368.0	1.84%	939.1	1.96%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-1.550e-01	1.0000	6413.0	32.06%	15566.7	32.48%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.548e-01	1.0000	231.0	1.16%	599.9	1.25%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-1.461e-01	1.0000	1970.0	9.85%	4853.0	10.13%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.428e-01	1.0000	1357.0	6.78%	3364.3	7.02%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.414e-01	1.0000	1061.0	5.30%	2643.6	5.52%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-1.359e-01	1.0000	701.0	3.50%	1764.4	3.68%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.359e-01	1.0000	16.0	0.08%	51.6	0.11%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.344e-01	1.0000	9.0	0.04%	31.1	0.06%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.326e-01	1.0000	798.0	3.99%	2003.7	4.18%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.325e-01	1.0000	2799.0	13.99%	6868.5	14.33%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.322e-01	1.0000	324.0	1.62%	835.3	1.74%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.317e-01	1.0000	477.0	2.38%	1214.2	2.53%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.309e-01	1.0000	810.0	4.05%	2033.7	4.24%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.305e-01	1.0000	5.0	0.03%	19.4	0.04%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-1.305e-01	1.0000	185.0	0.92%	488.4	1.02%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.298e-01	1.0000	280.0	1.40%	727.0	1.52%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-1.292e-01	1.0000	18.0	0.09%	57.3	0.12%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-1.288e-01	1.0000	1068.0	5.34%	2665.9	5.56%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.229e-01	1.0000	338.0	1.69%	873.0	1.82%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-1.229e-01	1.0000	419.0	2.10%	1073.3	2.24%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-1.218e-01	1.0000	3588.0	17.94%	8783.9	18.33%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.207e-01	1.0000	1239.0	6.19%	3086.5	6.44%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.198e-01	1.0000	1279.0	6.40%	3184.9	6.65%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.175e-01	1.0000	103.0	0.52%	282.4	0.59%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.132e-01	1.0000	658.0	3.29%	1666.9	3.48%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.132e-01	1.0000	957.0	4.78%	2400.6	5.01%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.123e-01	1.0000	284.0	1.42%	740.2	1.54%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-1.122e-01	1.0000	1187.0	5.93%	2963.9	6.18%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.017e-01	1.0000	576.0	2.88%	1469.0	3.07%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.004e-01	1.0000	2956.0	14.78%	7270.4	15.17%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.001e-01	1.0000	1488.0	7.44%	3704.7	7.73%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-9.940e-02	1.0000	93.0	0.46%	259.9	0.54%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-9.885e-02	1.0000	776.0	3.88%	1962.0	4.09%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.802e-02	1.0000	412.0	2.06%	1063.6	2.22%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-9.691e-02	1.0000	976.0	4.88%	2454.3	5.12%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-9.536e-02	1.0000	1575.0	7.88%	3919.2	8.18%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-9.512e-02	1.0000	8.0	0.04%	30.5	0.06%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.340e-02	1.0000	70.0	0.35%	200.8	0.42%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-9.265e-02	1.0000	673.0	3.36%	1711.9	3.57%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-9.156e-02	1.0000	3930.0	19.65%	9634.3	20.10%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-9.047e-02	1.0000	148.0	0.74%	403.0	0.84%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-8.986e-02	1.0000	155.0	0.78%	421.0	0.88%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.984e-02	1.0000	87.0	0.43%	245.7	0.51%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-8.929e-02	1.0000	640.0	3.20%	1631.2	3.40%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-8.919e-02	1.0000	1387.0	6.93%	3464.1	7.23%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-8.873e-02	1.0000	1312.0	6.56%	3281.9	6.85%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-8.740e-02	1.0000	145.0	0.73%	395.1	0.82%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-8.686e-02	1.0000	501.0	2.50%	1288.5	2.69%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-8.589e-02	1.0000	688.0	3.44%	1751.6	3.65%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-8.426e-02	1.0000	330.0	1.65%	863.8	1.80%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-8.142e-02	1.0000	658.0	3.29%	1679.6	3.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-7.822e-02	1.0000	82.0	0.41%	234.3	0.49%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-7.809e-02	1.0000	1066.0	5.33%	2685.7	5.60%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-7.802e-02	1.0000	168.0	0.84%	456.7	0.95%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-7.791e-02	1.0000	150.0	0.75%	410.8	0.86%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-7.747e-02	1.0000	810.0	4.05%	2056.3	4.29%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-7.680e-02	1.0000	792.0	3.96%	2012.8	4.20%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-7.655e-02	1.0000	34.0	0.17%	106.2	0.22%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-7.616e-02	1.0000	1165.0	5.83%	2929.9	6.11%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-7.583e-02	1.0000	344.0	1.72%	901.8	1.88%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-6.983e-02	1.0000	107.0	0.53%	301.9	0.63%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-6.860e-02	1.0000	1535.0	7.67%	3840.8	8.01%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-6.814e-02	1.0000	6920.0	34.60%	16870.7	35.20%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-6.571e-02	1.0000	1595.0	7.98%	3989.1	8.32%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-6.530e-02	1.0000	670.0	3.35%	1717.4	3.58%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-6.466e-02	1.0000	910.0	4.55%	2310.1	4.82%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-6.419e-02	1.0000	197.0	0.98%	534.4	1.12%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-6.306e-02	1.0000	792.0	3.96%	2020.1	4.22%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.060e-02	1.0000	6605.0	33.02%	16123.2	33.64%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-6.005e-02	1.0000	6.0	0.03%	26.2	0.05%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.956e-02	1.0000	1556.0	7.78%	3899.5	8.14%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-5.725e-02	1.0000	308.0	1.54%	818.7	1.71%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-5.721e-02	1.0000	287.0	1.44%	765.9	1.60%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-5.675e-02	1.0000	123.0	0.61%	346.0	0.72%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.480e-02	1.0000	220.0	1.10%	596.2	1.24%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-5.468e-02	1.0000	1913.0	9.56%	4776.6	9.97%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-5.468e-02	1.0000	1076.0	5.38%	2726.2	5.69%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.426e-02	1.0000	5427.0	27.13%	13294.8	27.74%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.081e-02	1.0000	488.0	2.44%	1273.9	2.66%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-4.890e-02	1.0000	149.0	0.74%	416.8	0.87%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-4.858e-02	1.0000	132.0	0.66%	372.0	0.78%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-4.843e-02	1.0000	1348.0	6.74%	3400.1	7.09%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.721e-02	1.0000	1286.0	6.43%	3249.0	6.78%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-4.473e-02	1.0000	138.0	0.69%	389.3	0.81%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.320e-02	1.0000	613.0	3.06%	1590.6	3.32%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-4.313e-02	1.0000	538.0	2.69%	1403.6	2.93%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-4.138e-02	1.0000	43.0	0.21%	137.1	0.29%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-4.084e-02	1.0000	209.0	1.04%	575.0	1.20%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-4.012e-02	1.0000	135.0	0.68%	383.4	0.80%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-3.848e-02	1.0000	186.0	0.93%	516.7	1.08%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-3.842e-02	1.0000	4.0	0.02%	21.2	0.04%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.815e-02	1.0000	1081.0	5.41%	2754.9	5.75%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-3.655e-02	1.0000	782.0	3.91%	2016.4	4.21%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-3.562e-02	1.0000	1262.0	6.31%	3203.4	6.68%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-3.515e-02	1.0000	266.0	1.33%	723.9	1.51%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-3.501e-02	1.0000	36.0	0.18%	119.6	0.25%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-3.413e-02	1.0000	1118.0	5.59%	2850.8	5.95%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-3.331e-02	1.0000	1789.0	8.95%	4500.8	9.39%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-3.161e-02	1.0000	827.0	4.13%	2133.2	4.45%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.145e-02	1.0000	470.0	2.35%	1242.5	2.59%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-3.088e-02	1.0000	111.0	0.56%	324.4	0.68%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-3.080e-02	1.0000	208.0	1.04%	578.0	1.21%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-3.027e-02	1.0000	289.0	1.44%	785.5	1.64%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.870e-02	1.0000	1600.0	8.00%	4044.3	8.44%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.863e-02	1.0000	1375.0	6.88%	3491.5	7.29%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.850e-02	1.0000	1860.0	9.30%	4682.2	9.77%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-2.626e-02	1.0000	112.0	0.56%	329.6	0.69%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-2.604e-02	1.0000	189.0	0.95%	531.4	1.11%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.584e-02	1.0000	4249.0	21.25%	10504.6	21.92%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.494e-02	1.0000	828.0	4.14%	2144.5	4.47%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-2.362e-02	1.0000	1619.0	8.09%	4100.1	8.56%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.354e-02	1.0000	648.0	3.24%	1697.3	3.54%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-2.228e-02	1.0000	1138.0	5.69%	2917.1	6.09%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.083e-02	1.0000	930.0	4.65%	2404.0	5.02%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.066e-02	1.0000	104.0	0.52%	311.1	0.65%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-2.046e-02	1.0000	1429.0	7.14%	3639.8	7.59%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.969e-02	1.0000	499.0	2.50%	1328.6	2.77%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-1.931e-02	1.0000	9049.0	45.25%	22099.0	46.11%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.930e-02	1.0000	1642.0	8.21%	4166.2	8.69%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.911e-02	1.0000	180.0	0.90%	513.7	1.07%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.905e-02	1.0000	213.0	1.06%	599.7	1.25%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.895e-02	1.0000	1925.0	9.62%	4862.9	10.15%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-1.822e-02	1.0000	1235.0	6.17%	3165.8	6.61%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.748e-02	1.0000	135.0	0.68%	396.6	0.83%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-1.735e-02	1.0000	51.0	0.26%	168.1	0.35%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.697e-02	1.0000	2261.0	11.30%	5691.1	11.87%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.623e-02	1.0000	182.0	0.91%	521.3	1.09%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-1.490e-02	1.0000	315.0	1.57%	867.2	1.81%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.450e-02	1.0000	267.0	1.33%	744.6	1.55%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-1.393e-02	1.0000	133.0	0.66%	394.6	0.82%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.372e-02	1.0000	1708.0	8.54%	4345.0	9.07%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-1.348e-02	1.0000	1166.0	5.83%	3006.4	6.27%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.170e-02	1.0000	350.0	1.75%	962.2	2.01%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-1.131e-02	1.0000	459.0	2.30%	1242.0	2.59%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.067e-02	1.0000	982.0	4.91%	2557.8	5.34%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.053e-02	1.0000	217.0	1.08%	620.1	1.29%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.008e-02	1.0000	64.0	0.32%	211.0	0.44%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-9.344e-03	1.0000	987.0	4.93%	2574.1	5.37%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-9.126e-03	1.0000	435.0	2.17%	1185.3	2.47%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.089e-03	1.0000	8.0	0.04%	42.7	0.09%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-9.076e-03	1.0000	692.0	3.46%	1836.3	3.83%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-9.046e-03	1.0000	79.0	0.40%	253.9	0.53%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-8.775e-03	1.0000	204.0	1.02%	589.1	1.23%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-8.680e-03	1.0000	81.0	0.40%	259.4	0.54%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-8.263e-03	1.0000	11.0	0.06%	53.6	0.11%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-7.648e-03	1.0000	1154.0	5.77%	2997.0	6.25%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-7.563e-03	1.0000	1738.0	8.69%	4444.8	9.27%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-7.392e-03	1.0000	700.0	3.50%	1862.1	3.89%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-7.301e-03	1.0000	591.0	2.96%	1587.8	3.31%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-7.257e-03	1.0000	755.0	3.77%	2001.8	4.18%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-6.849e-03	1.0000	717.0	3.58%	1907.7	3.98%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-6.707e-03	1.0000	271.0	1.35%	769.4	1.61%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-6.389e-03	1.0000	170.0	0.85%	504.9	1.05%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.345e-03	1.0000	438.0	2.19%	1201.0	2.51%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-6.222e-03	1.0000	2210.0	11.05%	5615.8	11.72%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.199e-03	1.0000	1610.0	8.05%	4136.5	8.63%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.966e-03	1.0000	1300.0	6.50%	3369.9	7.03%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-5.600e-03	1.0000	11.0	0.06%	55.7	0.12%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.346e-03	1.0000	483.0	2.42%	1320.7	2.76%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-5.270e-03	1.0000	724.0	3.62%	1932.2	4.03%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-5.164e-03	1.0000	197.0	0.98%	579.9	1.21%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.074e-03	1.0000	3252.0	16.26%	8178.1	17.06%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-5.015e-03	1.0000	2887.0	14.44%	7287.0	15.20%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-5.002e-03	1.0000	1189.0	5.95%	3099.8	6.47%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-4.997e-03	1.0000	1248.0	6.24%	3246.1	6.77%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-4.819e-03	1.0000	1650.0	8.25%	4245.7	8.86%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-4.557e-03	1.0000	123.0	0.61%	382.7	0.80%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-4.556e-03	1.0000	1217.0	6.08%	3172.9	6.62%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-4.046e-03	1.0000	654.0	3.27%	1762.5	3.68%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-3.714e-03	1.0000	8391.0	41.95%	20639.3	43.07%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-3.640e-03	1.0000	192.0	0.96%	571.1	1.19%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-3.574e-03	1.0000	282.0	1.41%	809.1	1.69%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.459e-03	1.0000	584.0	2.92%	1588.0	3.31%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-3.261e-03	1.0000	488.0	2.44%	1344.5	2.81%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.230e-03	1.0000	552.0	2.76%	1508.6	3.15%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.104e-03	1.0000	377.0	1.88%	1059.6	2.21%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-2.599e-03	1.0000	1778.0	8.89%	4586.9	9.57%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-2.402e-03	1.0000	84.0	0.42%	281.4	0.59%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.342e-03	1.0000	1755.0	8.77%	4533.8	9.46%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-2.271e-03	1.0000	4774.0	23.87%	11930.3	24.89%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-2.143e-03	1.0000	1901.0	9.50%	4898.7	10.22%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-2.041e-03	1.0000	528.0	2.64%	1457.8	3.04%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.933e-03	1.0000	148.0	0.74%	461.7	0.96%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.907e-03	1.0000	284.0	1.42%	825.9	1.72%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-1.875e-03	1.0000	594.0	2.97%	1628.8	3.40%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.693e-03	1.0000	2308.0	11.54%	5913.8	12.34%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.631e-03	1.0000	1115.0	5.58%	2950.2	6.16%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.612e-03	1.0000	44.0	0.22%	168.6	0.35%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.587e-03	1.0000	351.0	1.75%	1004.1	2.10%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.115e-03	1.0000	868.0	4.34%	2338.5	4.88%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.044e-03	1.0000	381.0	1.91%	1090.3	2.27%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-9.280e-04	1.0000	100.0	0.50%	336.1	0.70%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-8.990e-04	1.0000	1014.0	5.07%	2713.8	5.66%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-8.940e-04	1.0000	1796.0	8.98%	4670.5	9.75%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-8.300e-04	1.0000	936.0	4.68%	2518.6	5.26%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-7.780e-04	1.0000	1356.0	6.78%	3577.0	7.46%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-7.480e-04	1.0000	87.0	0.43%	301.2	0.63%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-7.370e-04	1.0000	1737.0	8.69%	4530.0	9.45%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-6.980e-04	1.0000	192.0	0.96%	594.5	1.24%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-6.750e-04	1.0000	2061.0	10.30%	5338.9	11.14%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-6.720e-04	1.0000	758.0	3.79%	2071.2	4.32%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.430e-04	1.0000	640.0	3.20%	1770.1	3.69%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-6.250e-04	1.0000	1276.0	6.38%	3383.7	7.06%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.120e-04	1.0000	325.0	1.62%	952.5	1.99%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-5.940e-04	1.0000	3.0	0.01%	32.9	0.07%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-5.410e-04	1.0000	1256.0	6.28%	3337.3	6.96%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.270e-04	1.0000	1315.0	6.58%	3486.4	7.27%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-4.730e-04	1.0000	1480.0	7.40%	3903.6	8.15%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-4.130e-04	1.0000	414.0	2.07%	1193.8	2.49%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-4.000e-04	1.0000	70.0	0.35%	257.5	0.54%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-3.990e-04	1.0000	1237.0	6.19%	3298.5	6.88%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-3.820e-04	1.0000	2354.0	11.77%	6085.1	12.70%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-3.590e-04	1.0000	59.0	0.29%	225.2	0.47%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.370e-04	1.0000	473.0	2.37%	1351.9	2.82%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-2.850e-04	1.0000	1572.0	7.86%	4149.1	8.66%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-2.450e-04	1.0000	1363.0	6.82%	3629.2	7.57%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.270e-04	1.0000	907.0	4.54%	2477.7	5.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.150e-04	1.0000	280.0	1.40%	848.1	1.77%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.980e-04	1.0000	1278.0	6.39%	3421.4	7.14%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.960e-04	1.0000	2011.0	10.05%	5257.1	10.97%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.880e-04	1.0000	4518.0	22.59%	11431.2	23.85%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-1.790e-04	1.0000	749.0	3.74%	2078.6	4.34%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.750e-04	1.0000	1985.0	9.93%	5196.1	10.84%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.710e-04	1.0000	1955.0	9.78%	5122.7	10.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.430e-04	1.0000	2403.0	12.02%	6242.6	13.03%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.380e-04	1.0000	3863.0	19.31%	9843.0	20.54%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.300e-04	1.0000	554.0	2.77%	1580.6	3.30%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.180e-04	1.0000	1530.0	7.65%	4070.5	8.49%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-1.170e-04	1.0000	9757.0	48.79%	24120.3	50.33%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-1.140e-04	1.0000	2040.0	10.20%	5347.1	11.16%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-9.900e-05	1.0000	2954.0	14.77%	7619.6	15.90%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-7.700e-05	1.0000	579.0	2.90%	1655.1	3.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.600e-05	1.0000	3082.0	15.41%	7945.5	16.58%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-7.500e-05	1.0000	52.0	0.26%	215.5	0.45%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-7.100e-05	1.0000	1881.0	9.40%	4965.1	10.36%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-6.200e-05	1.0000	1506.0	7.53%	4028.1	8.40%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-6.000e-05	1.0000	150.0	0.75%	506.4	1.06%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-4.800e-05	1.0000	557.0	2.79%	1606.8	3.35%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-4.000e-05	1.0000	507.0	2.54%	1478.4	3.08%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-3.600e-05	1.0000	1449.0	7.25%	3899.8	8.14%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-3.100e-05	1.0000	412.0	2.06%	1230.6	2.57%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-3.100e-05	1.0000	2320.0	11.60%	6088.0	12.70%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.600e-05	1.0000	4988.0	24.94%	12665.7	26.43%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.100e-05	1.0000	2.0	0.01%	37.2	0.08%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.500e-05	1.0000	5215.0	26.07%	13242.7	27.63%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-1.400e-05	1.0000	1954.0	9.77%	5197.7	10.85%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.200e-05	1.0000	2684.0	13.42%	7022.6	14.65%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-9.000e-06	1.0000	11.0	0.06%	84.3	0.18%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-5.000e-06	1.0000	172.0	0.86%	594.6	1.24%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.000e-06	1.0000	2953.0	14.77%	7729.1	16.13%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-3.000e-06	1.0000	2344.0	11.72%	6217.4	12.97%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-3.000e-06	1.0000	2684.0	13.42%	7072.8	14.76%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-2.000e-06	1.0000	519.0	2.60%	1561.2	3.26%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.000e-06	1.0000	701.0	3.50%	2056.1	4.29%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-0.000e+00	1.0000	2577.0	12.88%	6874.2	14.34%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	3845.0	19.23%	10051.4	20.97%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1852.0	9.26%	5077.1	10.59%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-0.000e+00	1.0000	1308.0	6.54%	3691.1	7.70%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-0.000e+00	1.0000	1651.0	8.25%	4574.5	9.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2469.0	12.35%	6650.0	13.88%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	1903.0	9.52%	5294.0	11.05%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-0.000e+00	1.0000	1048.0	5.24%	3083.2	6.43%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-0.000e+00	1.0000	1377.0	6.88%	3999.8	8.35%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1440.0	7.20%	4609.1	9.62%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-0.000e+00	1.0000	1215.0	6.08%	3581.3	7.47%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	4136.0	20.68%	11096.2	23.15%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-0.000e+00	1.0000	1513.0	7.56%	4326.6	9.03%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	301.0	1.50%	1091.9	2.28%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	1720.0	8.60%	5058.9	10.56%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	1558.0	7.79%	5132.3	10.71%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	3083.0	15.42%	8645.9	18.04%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-0.000e+00	1.0000	3878.0	19.39%	10755.1	22.44%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	451.0	2.25%	1612.2	3.36%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	47925.0	100.00%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	0.000e+00	1.0000	1678.0	8.39%	4839.8	10.10%