Homer de novo Motif Results (K562_SV40P_20kVs50k_output//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 20005
Total background sequences = 47923
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 C T A G T A G C A C G T A C T G C G T A A T C G A C G T A G T C C G T A A G T C G T A C T A G C 1e-297-6.861e+0215.62%6.31%37.5bp (38.8bp)Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer(0.977)
More Information | Similar Motifs Found		motif file (matrix)
2 T G C A T A G C G T A C A C T G A C T G C G T A C G T A T C A G G A C T C T A G 1e-233-5.385e+029.54%3.20%38.4bp (44.3bp)Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer(0.984)
More Information | Similar Motifs Found		motif file (matrix)
3 C T A G T C A G T G A C C A G T C T A G G T C A A C G T T A C G G T C A T G C A G T C A A G C T 1e-154-3.557e+023.92%0.82%36.6bp (36.8bp)Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer(0.958)
More Information | Similar Motifs Found		motif file (matrix)
4 T C G A G T A C G A T C C T G A A T G C T G C A C T G A A G C T C G A T A G T C G T A C A G T C 1e-94-2.186e+021.99%0.32%37.0bp (45.7bp)GFY(?)/Promoter/Homer(0.939)
More Information | Similar Motifs Found		motif file (matrix)
5 A G C T G T C A A C G T A T G C C T A G A T G C A C T G G C T A T A C G C G T A 1e-81-1.866e+023.28%1.07%38.1bp (45.6bp)GFX(?)/Promoter/Homer(0.853)
More Information | Similar Motifs Found		motif file (matrix)
6 A G C T A C G T A G T C A G T C G C T A C T A G A T C G C T G A C G T A G T A C C G T A T C A G 1e-79-1.833e+023.31%1.10%36.6bp (37.9bp)STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer(0.918)
More Information | Similar Motifs Found		motif file (matrix)
7 T C A G G T A C T C A G A T G C G C T A A C G T A T C G A T G C A C T G A G T C T G C A A C G T 1e-71-1.655e+023.04%1.03%36.4bp (51.5bp)NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer(0.976)
More Information | Similar Motifs Found		motif file (matrix)
8 C G T A C G T A C T A G C G T A A C G T A C T G A T C G A G T C A C T G T A C G 1e-68-1.587e+021.71%0.35%41.1bp (47.0bp)YY1/MA0095.2/Jaspar(0.925)
More Information | Similar Motifs Found		motif file (matrix)
9 T A C G G A C T A T G C T C G A A G T C T A C G C A G T A T C G G T C A T A G C 1e-67-1.543e+024.04%1.70%36.7bp (43.3bp)BHLHE41/MA0636.1/Jaspar(0.820)
More Information | Similar Motifs Found		motif file (matrix)
10 C T A G A G T C A G T C C T G A T C G A G C A T T A G C T C A G C T A G T G A C 1e-58-1.336e+025.78%3.06%38.3bp (42.6bp)NFY(CCAAT)/Promoter/Homer(0.947)
More Information | Similar Motifs Found		motif file (matrix)
11 A G T C A G T C A C G T C G A T C G T A A C G T G A T C C G A T 1e-53-1.236e+029.44%6.02%38.0bp (39.4bp)GAT1/GAT1_RAPA/1-GZF3,2-GLN3(Harbison)/Yeast(0.973)
More Information | Similar Motifs Found		motif file (matrix)
12 A C G T A G C T A G T C A C T G A G T C A C G T A T G C T A G C A C T G A G T C 1e-43-9.929e+010.94%0.16%33.3bp (53.5bp)POL013.1_MED-1/Jaspar(0.726)
More Information | Similar Motifs Found		motif file (matrix)
13 C G A T G C T A A C G T C T A G A T G C G C A T C T G A C T A G C T G A A G T C G T C A G T C A 1e-42-9.732e+011.02%0.20%34.8bp (41.4bp)ARF1(ABI3/VP1)/Arabidopsis thaliana/AthaMap(0.672)
More Information | Similar Motifs Found		motif file (matrix)
14 A G T C G A T C T A G C T G A C T A G C G A T C A G T C A G C T 1e-39-9.180e+019.47%6.49%39.3bp (47.5bp)MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast(0.900)
More Information | Similar Motifs Found		motif file (matrix)
15 G T A C A T C G G A C T A G T C T C G A T G A C A T G C A T G C C T G A A T G C 1e-33-7.814e+012.60%1.24%38.7bp (43.4bp)Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer(0.761)
More Information | Similar Motifs Found		motif file (matrix)
16 A C G T G A C T G C T A C A T G A C T G T C A G A T G C A C G T C G T A T A C G 1e-32-7.369e+011.68%0.65%36.9bp (37.3bp)TBF1/MA0403.1/Jaspar(0.756)
More Information | Similar Motifs Found		motif file (matrix)
17 A T C G A C G T A T C G A T C G A C G T A C G T C G T A T G C A A G C T C G T A 1e-31-7.159e+010.39%0.02%36.6bp (37.7bp)RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer(0.674)
More Information | Similar Motifs Found		motif file (matrix)
18 A G T C G T C A A T C G A T G C T C G A T G A C G C T A C G T A A C T G C G T A A T C G A C T G 1e-30-7.130e+010.40%0.02%36.1bp (40.1bp)CUP2/MA0287.1/Jaspar(0.694)
More Information | Similar Motifs Found		motif file (matrix)
19 A T C G C G A T C G A T C T G A A T G C T A C G T A G C C T A G G T A C T C A G 1e-29-6.904e+010.41%0.03%34.3bp (52.0bp)LARK(RRM,Znf)/Drosophila_melanogaster-RNCMPT00097-PBM/HughesRNA(0.768)
More Information | Similar Motifs Found		motif file (matrix)
20 C G A T G T A C A G T C A C T G A G T C A G T C A C T G A C T G 1e-25-5.851e+011.34%0.53%39.0bp (52.9bp)YDR520C(MacIsaac)/Yeast(0.874)
More Information | Similar Motifs Found		motif file (matrix)
21 C G T A A G C T A C T G A C T G C T G A C T G A A C T G A C T G A G T C C T A G A C T G A C T G 1e-23-5.330e+010.26%0.01%37.3bp (56.6bp)SP2/MA0516.1/Jaspar(0.709)
More Information | Similar Motifs Found		motif file (matrix)
22 A G T C A T C G T G C A A G T C C T G A C T G A A G T C A C T G A C T G A G T C 1e-21-5.049e+010.36%0.04%34.8bp (31.9bp)UGA3/Literature(Harbison)/Yeast(0.707)
More Information | Similar Motifs Found		motif file (matrix)
23 C G T A A G T C A C T G C G T A A C T G C G T A C G A T A G T C 1e-17-3.945e+010.68%0.22%36.5bp (48.6bp)ECM23/MA0293.1/Jaspar(0.723)
More Information | Similar Motifs Found		motif file (matrix)
24 A G T C A C G T C G T A A C G T A G T C A C G T A G T C C G T A A G T C C G T A 1e-16-3.781e+010.24%0.02%40.2bp (35.5bp)HNRNPAB(RRM)/Tetraodon_nigroviridis-RNCMPT00245-PBM/HughesRNA(0.687)
More Information | Similar Motifs Found		motif file (matrix)
25 A G T C A C T G A G C T A C G T A G T C A G T C A C G T C G T A 1e-13-3.043e+010.40%0.11%35.7bp (52.0bp)PB0056.1_Rfxdc2_1/Jaspar(0.733)
More Information | Similar Motifs Found		motif file (matrix)
26 A G T C A C T G A C T G A C T G A G T C A G T C A G T C A T C G A C T G C G T A 1e-12-2.960e+010.30%0.06%31.0bp (53.4bp)SKN7(MacIsaac)/Yeast(0.835)
More Information | Similar Motifs Found		motif file (matrix)
27 A C G T A G T C A C T G A C T G A C G T A C G T A C T G A G T C 1e-12-2.835e+010.24%0.04%34.7bp (32.4bp)GAMYB(MYB)/Hordeum vulgare/AthaMap(0.780)
More Information | Similar Motifs Found		motif file (matrix)
28 * T A C G C T G A T A C G A T G C C T G A T A C G T C A G A G C T T A C G T C A G T G A C A G T C 1e-10-2.381e+010.27%0.06%37.2bp (42.0bp)Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer(0.804)
More Information | Similar Motifs Found		motif file (matrix)
29 * A C G T A C T G A C G T A G T C A G T C A C G T A C T G C G T A A G T C A G T C 1e-10-2.354e+010.14%0.01%37.6bp (27.4bp)SRSF1(RRM)/Homo_sapiens-RNCMPT00110-PBM/HughesRNA(0.772)
More Information | Similar Motifs Found		motif file (matrix)