Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 50043)	% of Background Sequences with Motif
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-59	-1.378e+02	0.0000	262.0	1.31%	115.1	0.23%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.749e+00	0.1988	1072.0	5.36%	2359.6	4.75%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-2	-5.637e+00	1.0000	1046.0	5.23%	2354.7	4.74%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-2	-5.326e+00	1.0000	592.0	2.96%	1294.0	2.60%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-5.249e+00	1.0000	5795.0	28.98%	13913.0	28.00%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.206e+00	1.0000	317.0	1.58%	660.5	1.33%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e-2	-4.829e+00	1.0000	1706.0	8.53%	3961.5	7.97%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e-2	-4.784e+00	1.0000	1650.0	8.25%	3828.8	7.71%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e-2	-4.702e+00	1.0000	1583.0	7.92%	3670.9	7.39%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e-1	-4.557e+00	1.0000	1185.0	5.92%	2720.8	5.48%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e-1	-4.346e+00	1.0000	1892.0	9.46%	4431.9	8.92%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e-1	-4.326e+00	1.0000	2906.0	14.53%	6895.7	13.88%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e-1	-4.234e+00	1.0000	287.0	1.44%	608.5	1.22%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e-1	-4.169e+00	1.0000	608.0	3.04%	1359.2	2.74%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-1	-4.132e+00	1.0000	164.0	0.82%	330.5	0.67%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e-1	-3.973e+00	1.0000	151.0	0.76%	303.0	0.61%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-1	-3.907e+00	1.0000	322.0	1.61%	695.6	1.40%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.834e+00	1.0000	3304.0	16.52%	7896.2	15.89%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e-1	-3.738e+00	1.0000	903.0	4.52%	2074.7	4.18%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-1	-3.730e+00	1.0000	1182.0	5.91%	2744.4	5.52%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e-1	-3.709e+00	1.0000	63.0	0.32%	113.9	0.23%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-3.584e+00	1.0000	350.0	1.75%	767.0	1.54%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-1	-3.512e+00	1.0000	2659.0	13.30%	6341.0	12.76%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.389e+00	1.0000	343.0	1.71%	755.7	1.52%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e-1	-3.235e+00	1.0000	370.0	1.85%	822.2	1.65%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-3.227e+00	1.0000	1097.0	5.49%	2560.0	5.15%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e-1	-3.224e+00	1.0000	217.0	1.08%	465.8	0.94%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-3.198e+00	1.0000	209.0	1.04%	447.2	0.90%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-3.122e+00	1.0000	1984.0	9.92%	4717.3	9.50%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-1	-3.105e+00	1.0000	174.0	0.87%	368.5	0.74%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e-1	-3.103e+00	1.0000	19984.0	99.92%	49615.1	99.87%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-1	-3.050e+00	1.0000	213.0	1.06%	459.9	0.93%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e-1	-3.043e+00	1.0000	9871.0	49.35%	24172.0	48.65%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-1	-3.025e+00	1.0000	989.0	4.95%	2308.8	4.65%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.835e+00	1.0000	1804.0	9.02%	4295.3	8.65%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e-1	-2.814e+00	1.0000	3539.0	17.70%	8544.5	17.20%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.812e+00	1.0000	1231.0	6.16%	2903.9	5.85%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.791e+00	1.0000	1750.0	8.75%	4166.3	8.39%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e-1	-2.783e+00	1.0000	745.0	3.72%	1730.3	3.48%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e-1	-2.749e+00	1.0000	670.0	3.35%	1551.7	3.12%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e-1	-2.689e+00	1.0000	785.0	3.92%	1830.5	3.68%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-1	-2.677e+00	1.0000	543.0	2.71%	1249.7	2.52%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-2.664e+00	1.0000	682.0	3.41%	1583.1	3.19%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-1	-2.642e+00	1.0000	807.0	4.04%	1885.6	3.80%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-2.609e+00	1.0000	369.0	1.85%	836.4	1.68%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-2.602e+00	1.0000	301.0	1.50%	675.2	1.36%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-1	-2.601e+00	1.0000	2131.0	10.66%	5108.9	10.28%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e-1	-2.580e+00	1.0000	7.0	0.03%	7.6	0.02%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e-1	-2.572e+00	1.0000	5255.0	26.27%	12791.2	25.75%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e-1	-2.555e+00	1.0000	2550.0	12.75%	6137.4	12.35%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.549e+00	1.0000	607.0	3.03%	1407.4	2.83%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-1	-2.546e+00	1.0000	195.0	0.97%	427.0	0.86%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e-1	-2.533e+00	1.0000	79.0	0.40%	160.8	0.32%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-1	-2.524e+00	1.0000	3907.0	19.54%	9473.0	19.07%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e-1	-2.520e+00	1.0000	1729.0	8.64%	4131.9	8.32%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-1	-2.515e+00	1.0000	589.0	2.94%	1365.4	2.75%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-1	-2.510e+00	1.0000	131.0	0.66%	280.0	0.56%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e-1	-2.490e+00	1.0000	1804.0	9.02%	4316.5	8.69%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.475e+00	1.0000	68.0	0.34%	136.8	0.28%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-1	-2.468e+00	1.0000	1069.0	5.34%	2527.0	5.09%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-2.457e+00	1.0000	1154.0	5.77%	2734.4	5.50%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-2.449e+00	1.0000	2652.0	13.26%	6395.3	12.87%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e-1	-2.448e+00	1.0000	1644.0	8.22%	3928.9	7.91%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-2.448e+00	1.0000	156.0	0.78%	338.7	0.68%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e-1	-2.430e+00	1.0000	869.0	4.35%	2044.3	4.11%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-1	-2.425e+00	1.0000	2008.0	10.04%	4819.4	9.70%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e-1	-2.421e+00	1.0000	605.0	3.02%	1407.1	2.83%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-1	-2.413e+00	1.0000	184.0	0.92%	404.3	0.81%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e-1	-2.389e+00	1.0000	1850.0	9.25%	4435.3	8.93%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e-1	-2.370e+00	1.0000	588.0	2.94%	1368.5	2.75%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-2.366e+00	1.0000	595.0	2.97%	1385.5	2.79%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.363e+00	1.0000	3052.0	15.26%	7384.7	14.86%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-1	-2.362e+00	1.0000	963.0	4.81%	2275.5	4.58%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.354e+00	1.0000	3625.0	18.12%	8794.9	17.70%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e-1	-2.350e+00	1.0000	135.0	0.68%	291.9	0.59%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-1	-2.345e+00	1.0000	2085.0	10.42%	5014.0	10.09%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.340e+00	1.0000	668.0	3.34%	1562.1	3.14%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-1	-2.331e+00	1.0000	1134.0	5.67%	2692.4	5.42%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-1	-2.319e+00	1.0000	2061.0	10.30%	4956.1	9.98%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-2.292e+00	1.0000	116.0	0.58%	248.2	0.50%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-2.281e+00	1.0000	78.0	0.39%	161.6	0.33%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.275e+00	1.0000	1111.0	5.56%	2639.3	5.31%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-2.271e+00	1.0000	1664.0	8.32%	3988.2	8.03%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.263e+00	1.0000	6840.0	34.20%	16741.4	33.70%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-2.243e+00	1.0000	627.0	3.14%	1467.1	2.95%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.233e+00	1.0000	221.0	1.10%	496.0	1.00%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-2.227e+00	1.0000	449.0	2.25%	1040.0	2.09%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-2.210e+00	1.0000	655.0	3.28%	1536.5	3.09%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.201e+00	1.0000	2164.0	10.82%	5217.8	10.50%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-2.184e+00	1.0000	1410.0	7.05%	3373.5	6.79%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-2.169e+00	1.0000	4515.0	22.57%	11006.0	22.15%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-2.169e+00	1.0000	1358.0	6.79%	3247.2	6.54%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.161e+00	1.0000	731.0	3.65%	1722.5	3.47%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-2.158e+00	1.0000	633.0	3.16%	1485.9	2.99%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.144e+00	1.0000	397.0	1.98%	917.5	1.85%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-2.138e+00	1.0000	2508.0	12.54%	6066.2	12.21%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-2.117e+00	1.0000	55.0	0.27%	111.0	0.22%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-2.111e+00	1.0000	1591.0	7.95%	3820.5	7.69%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.105e+00	1.0000	1263.0	6.31%	3019.3	6.08%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-2.101e+00	1.0000	145.0	0.73%	319.3	0.64%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-2.088e+00	1.0000	554.0	2.77%	1297.7	2.61%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-2.082e+00	1.0000	821.0	4.11%	1944.4	3.91%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.079e+00	1.0000	816.0	4.08%	1932.4	3.89%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.073e+00	1.0000	391.0	1.96%	905.6	1.82%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.051e+00	1.0000	5100.0	25.50%	12462.7	25.09%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.033e+00	1.0000	820.0	4.10%	1944.9	3.91%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-2.028e+00	1.0000	4699.0	23.49%	11474.2	23.10%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-2.025e+00	1.0000	1374.0	6.87%	3295.6	6.63%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-2.006e+00	1.0000	165.0	0.83%	368.5	0.74%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.998e+00	1.0000	402.0	2.01%	934.5	1.88%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.976e+00	1.0000	363.0	1.81%	841.2	1.69%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.972e+00	1.0000	2002.0	10.01%	4837.2	9.74%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-1.969e+00	1.0000	1138.0	5.69%	2722.5	5.48%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-1.955e+00	1.0000	3387.0	16.93%	8245.5	16.60%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.937e+00	1.0000	3409.0	17.04%	8301.2	16.71%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.925e+00	1.0000	2397.0	11.98%	5811.1	11.70%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.921e+00	1.0000	770.0	3.85%	1828.1	3.68%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.915e+00	1.0000	1230.0	6.15%	2950.3	5.94%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.915e+00	1.0000	3458.0	17.29%	8424.1	16.96%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.905e+00	1.0000	1495.0	7.47%	3599.2	7.24%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-1.891e+00	1.0000	434.0	2.17%	1015.4	2.04%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.879e+00	1.0000	135.0	0.68%	300.7	0.61%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-1.862e+00	1.0000	346.0	1.73%	804.4	1.62%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.859e+00	1.0000	857.0	4.29%	2043.0	4.11%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.856e+00	1.0000	438.0	2.19%	1026.6	2.07%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.845e+00	1.0000	530.0	2.65%	1249.9	2.52%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.837e+00	1.0000	1983.0	9.92%	4801.6	9.66%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.828e+00	1.0000	908.0	4.54%	2169.3	4.37%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.823e+00	1.0000	2173.0	10.87%	5269.0	10.61%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.800e+00	1.0000	428.0	2.14%	1004.5	2.02%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.796e+00	1.0000	311.0	1.55%	722.5	1.45%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.774e+00	1.0000	459.0	2.30%	1080.7	2.18%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.768e+00	1.0000	1090.0	5.45%	2617.5	5.27%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.766e+00	1.0000	489.0	2.44%	1153.5	2.32%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.753e+00	1.0000	4512.0	22.56%	11043.5	22.23%
SeqBias: TA-repeat	TATATATATA	1e0	-1.719e+00	1.0000	2846.0	14.23%	6935.5	13.96%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.717e+00	1.0000	382.0	1.91%	896.9	1.81%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.700e+00	1.0000	130.0	0.65%	292.1	0.59%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-1.693e+00	1.0000	151.0	0.76%	342.9	0.69%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.690e+00	1.0000	258.0	1.29%	598.9	1.21%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.686e+00	1.0000	558.0	2.79%	1324.4	2.67%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-1.679e+00	1.0000	1725.0	8.62%	4181.0	8.42%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-1.667e+00	1.0000	432.0	2.16%	1019.2	2.05%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.661e+00	1.0000	125.0	0.62%	281.1	0.57%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e0	-1.658e+00	1.0000	1765.0	8.82%	4280.7	8.62%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-1.648e+00	1.0000	2893.0	14.46%	7058.6	14.21%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.642e+00	1.0000	308.0	1.54%	720.2	1.45%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-1.627e+00	1.0000	902.0	4.51%	2166.2	4.36%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.604e+00	1.0000	440.0	2.20%	1041.2	2.10%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.599e+00	1.0000	124.0	0.62%	280.7	0.57%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e0	-1.593e+00	1.0000	875.0	4.38%	2102.1	4.23%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-1.593e+00	1.0000	406.0	2.03%	959.0	1.93%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.588e+00	1.0000	147.0	0.73%	335.5	0.68%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.586e+00	1.0000	1369.0	6.84%	3313.8	6.67%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-1.586e+00	1.0000	14.0	0.07%	25.4	0.05%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.572e+00	1.0000	1349.0	6.74%	3265.1	6.57%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-1.568e+00	1.0000	455.0	2.27%	1079.1	2.17%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-1.549e+00	1.0000	105.0	0.53%	236.4	0.48%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-1.543e+00	1.0000	222.0	1.11%	516.5	1.04%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.535e+00	1.0000	3199.0	16.00%	7825.5	15.75%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.525e+00	1.0000	506.0	2.53%	1205.3	2.43%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.511e+00	1.0000	165.0	0.83%	380.5	0.77%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.510e+00	1.0000	3406.0	17.03%	8339.7	16.79%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.508e+00	1.0000	1070.0	5.35%	2585.7	5.20%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-1.484e+00	1.0000	148.0	0.74%	340.5	0.69%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.481e+00	1.0000	332.0	1.66%	784.2	1.58%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-1.480e+00	1.0000	71.0	0.36%	157.1	0.32%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.468e+00	1.0000	177.0	0.89%	410.5	0.83%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.468e+00	1.0000	1371.0	6.86%	3327.1	6.70%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.465e+00	1.0000	2017.0	10.08%	4917.7	9.90%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.461e+00	1.0000	515.0	2.57%	1230.9	2.48%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-1.461e+00	1.0000	144.0	0.72%	331.2	0.67%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.461e+00	1.0000	437.0	2.19%	1040.2	2.09%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.456e+00	1.0000	325.0	1.62%	768.1	1.55%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.452e+00	1.0000	334.0	1.67%	790.6	1.59%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.451e+00	1.0000	643.0	3.21%	1543.0	3.11%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-1.438e+00	1.0000	1068.0	5.34%	2585.1	5.20%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.430e+00	1.0000	1469.0	7.34%	3571.3	7.19%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e0	-1.430e+00	1.0000	1545.0	7.72%	3758.8	7.57%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-1.426e+00	1.0000	1925.0	9.62%	4694.7	9.45%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-1.410e+00	1.0000	388.0	1.94%	923.8	1.86%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-1.409e+00	1.0000	316.0	1.58%	748.8	1.51%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-1.407e+00	1.0000	689.0	3.45%	1659.0	3.34%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.404e+00	1.0000	646.0	3.23%	1553.1	3.13%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.403e+00	1.0000	2234.0	11.17%	5458.1	10.99%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.389e+00	1.0000	1196.0	5.98%	2903.4	5.84%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.377e+00	1.0000	141.0	0.70%	326.3	0.66%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.367e+00	1.0000	3215.0	16.07%	7884.6	15.87%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.365e+00	1.0000	4598.0	22.99%	11305.2	22.76%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-1.361e+00	1.0000	167.0	0.83%	389.8	0.78%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.361e+00	1.0000	645.0	3.23%	1553.1	3.13%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.359e+00	1.0000	30.0	0.15%	63.6	0.13%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.356e+00	1.0000	811.0	4.06%	1960.5	3.95%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-1.354e+00	1.0000	835.0	4.17%	2019.8	4.07%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-1.349e+00	1.0000	697.0	3.48%	1681.6	3.38%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.330e+00	1.0000	311.0	1.55%	739.3	1.49%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-1.329e+00	1.0000	961.0	4.81%	2330.3	4.69%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.328e+00	1.0000	32.0	0.16%	68.4	0.14%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.326e+00	1.0000	1144.0	5.72%	2780.5	5.60%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.321e+00	1.0000	429.0	2.15%	1027.7	2.07%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-1.313e+00	1.0000	3131.0	15.65%	7683.4	15.47%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-1.312e+00	1.0000	1940.0	9.70%	4742.3	9.55%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.310e+00	1.0000	1871.0	9.35%	4572.1	9.20%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-1.305e+00	1.0000	1487.0	7.43%	3626.3	7.30%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.288e+00	1.0000	140.0	0.70%	326.9	0.66%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.288e+00	1.0000	140.0	0.70%	326.9	0.66%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.287e+00	1.0000	2566.0	12.83%	6290.7	12.66%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.283e+00	1.0000	334.0	1.67%	797.5	1.61%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.269e+00	1.0000	886.0	4.43%	2150.2	4.33%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.265e+00	1.0000	756.0	3.78%	1831.1	3.69%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-1.265e+00	1.0000	114.0	0.57%	264.2	0.53%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.259e+00	1.0000	318.0	1.59%	759.9	1.53%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.257e+00	1.0000	1849.0	9.25%	4523.1	9.10%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.255e+00	1.0000	96.0	0.48%	221.7	0.45%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-1.252e+00	1.0000	1805.0	9.03%	4415.4	8.89%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.243e+00	1.0000	1160.0	5.80%	2826.2	5.69%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.242e+00	1.0000	1505.0	7.52%	3676.7	7.40%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.241e+00	1.0000	3488.0	17.44%	8575.4	17.26%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.228e+00	1.0000	412.0	2.06%	991.0	1.99%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.220e+00	1.0000	578.0	2.89%	1398.0	2.81%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.216e+00	1.0000	291.0	1.46%	695.6	1.40%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.209e+00	1.0000	182.0	0.91%	430.8	0.87%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.205e+00	1.0000	170.0	0.85%	401.3	0.81%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.200e+00	1.0000	15334.0	76.67%	37996.8	76.48%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-1.196e+00	1.0000	4186.0	20.93%	10309.3	20.75%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.194e+00	1.0000	3885.0	19.43%	9564.7	19.25%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.190e+00	1.0000	119.0	0.60%	278.8	0.56%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.188e+00	1.0000	14.0	0.07%	28.1	0.06%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.185e+00	1.0000	331.0	1.65%	794.4	1.60%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-1.185e+00	1.0000	152.0	0.76%	358.3	0.72%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.180e+00	1.0000	898.0	4.49%	2186.6	4.40%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.171e+00	1.0000	1145.0	5.73%	2795.2	5.63%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-1.167e+00	1.0000	2246.0	11.23%	5513.5	11.10%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.165e+00	1.0000	1963.0	9.81%	4814.3	9.69%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.165e+00	1.0000	71.0	0.36%	163.8	0.33%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.155e+00	1.0000	13.0	0.07%	26.6	0.05%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.152e+00	1.0000	685.0	3.43%	1664.1	3.35%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.151e+00	1.0000	42.0	0.21%	94.3	0.19%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.145e+00	1.0000	533.0	2.67%	1291.9	2.60%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-1.142e+00	1.0000	225.0	1.12%	537.2	1.08%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.134e+00	1.0000	1943.0	9.71%	4768.9	9.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.134e+00	1.0000	2153.0	10.76%	5287.9	10.64%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.133e+00	1.0000	912.0	4.56%	2224.1	4.48%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.131e+00	1.0000	303.0	1.52%	728.5	1.47%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.127e+00	1.0000	64.0	0.32%	147.7	0.30%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.124e+00	1.0000	86.0	0.43%	200.3	0.40%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-1.120e+00	1.0000	545.0	2.73%	1322.7	2.66%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-1.117e+00	1.0000	216.0	1.08%	516.4	1.04%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.113e+00	1.0000	614.0	3.07%	1492.2	3.00%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.109e+00	1.0000	414.0	2.07%	1001.5	2.02%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.093e+00	1.0000	1060.0	5.30%	2592.2	5.22%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-1.089e+00	1.0000	184.0	0.92%	439.2	0.88%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-1.087e+00	1.0000	161.0	0.80%	383.4	0.77%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-1.084e+00	1.0000	2546.0	12.73%	6265.6	12.61%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.079e+00	1.0000	2454.0	12.27%	6038.8	12.16%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.079e+00	1.0000	963.0	4.81%	2354.2	4.74%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.069e+00	1.0000	3731.0	18.66%	9201.8	18.52%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.055e+00	1.0000	787.0	3.94%	1922.9	3.87%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-1.054e+00	1.0000	1691.0	8.46%	4154.9	8.36%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.043e+00	1.0000	2678.0	13.39%	6597.3	13.28%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.043e+00	1.0000	3953.0	19.77%	9755.6	19.64%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e0	-1.042e+00	1.0000	5116.0	25.58%	12638.6	25.44%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.041e+00	1.0000	245.0	1.23%	590.2	1.19%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.034e+00	1.0000	566.0	2.83%	1379.2	2.78%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.032e+00	1.0000	3489.0	17.45%	8607.4	17.33%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.028e+00	1.0000	424.0	2.12%	1030.5	2.07%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.027e+00	1.0000	354.0	1.77%	858.5	1.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.026e+00	1.0000	1288.0	6.44%	3162.0	6.36%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.023e+00	1.0000	1400.0	7.00%	3438.8	6.92%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e0	-1.021e+00	1.0000	410.0	2.05%	996.1	2.00%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-1.014e+00	1.0000	602.0	3.01%	1469.4	2.96%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.010e+00	1.0000	1325.0	6.62%	3254.4	6.55%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-1.002e+00	1.0000	501.0	2.50%	1221.6	2.46%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.986e-01	1.0000	95.0	0.47%	225.1	0.45%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-9.984e-01	1.0000	252.0	1.26%	609.9	1.23%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-9.982e-01	1.0000	7262.0	36.31%	17970.9	36.17%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.979e-01	1.0000	5404.0	27.02%	13360.6	26.89%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-9.974e-01	1.0000	942.0	4.71%	2309.4	4.65%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-9.888e-01	1.0000	229.0	1.15%	554.0	1.12%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-9.882e-01	1.0000	1935.0	9.68%	4765.9	9.59%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-9.879e-01	1.0000	57.0	0.29%	133.4	0.27%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-9.842e-01	1.0000	153.0	0.77%	367.9	0.74%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-9.840e-01	1.0000	399.0	1.99%	971.5	1.96%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-9.832e-01	1.0000	52.0	0.26%	121.6	0.24%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.799e-01	1.0000	80.0	0.40%	189.3	0.38%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e0	-9.746e-01	1.0000	82.0	0.41%	194.9	0.39%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-9.705e-01	1.0000	134.0	0.67%	321.9	0.65%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-9.697e-01	1.0000	839.0	4.20%	2057.9	4.14%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-9.660e-01	1.0000	1212.0	6.06%	2979.7	6.00%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-9.660e-01	1.0000	1548.0	7.74%	3810.7	7.67%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-9.604e-01	1.0000	1951.0	9.75%	4808.6	9.68%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-9.556e-01	1.0000	828.0	4.14%	2031.5	4.09%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-9.550e-01	1.0000	53.0	0.27%	124.3	0.25%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-9.544e-01	1.0000	685.0	3.43%	1678.3	3.38%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-9.512e-01	1.0000	874.0	4.37%	2145.3	4.32%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-9.508e-01	1.0000	280.0	1.40%	680.7	1.37%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-9.500e-01	1.0000	128.0	0.64%	307.7	0.62%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-9.369e-01	1.0000	1115.0	5.58%	2742.4	5.52%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-9.335e-01	1.0000	4543.0	22.71%	11236.5	22.62%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-9.194e-01	1.0000	90.0	0.45%	215.8	0.43%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-9.193e-01	1.0000	560.0	2.80%	1372.5	2.76%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-9.112e-01	1.0000	2024.0	10.12%	4995.3	10.05%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-9.079e-01	1.0000	957.0	4.78%	2354.6	4.74%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-9.060e-01	1.0000	342.0	1.71%	835.8	1.68%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-9.023e-01	1.0000	634.0	3.17%	1556.9	3.13%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-8.981e-01	1.0000	1662.0	8.31%	4100.0	8.25%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-8.953e-01	1.0000	741.0	3.71%	1821.3	3.67%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-8.821e-01	1.0000	531.0	2.66%	1303.2	2.62%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.753e-01	1.0000	2864.0	14.32%	7082.3	14.26%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-8.720e-01	1.0000	521.0	2.60%	1279.6	2.58%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.714e-01	1.0000	1219.0	6.09%	3006.3	6.05%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-8.709e-01	1.0000	857.0	4.29%	2110.5	4.25%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-8.698e-01	1.0000	544.0	2.72%	1336.4	2.69%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-8.674e-01	1.0000	2248.0	11.24%	5556.8	11.19%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-8.671e-01	1.0000	228.0	1.14%	556.4	1.12%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-8.668e-01	1.0000	124.0	0.62%	300.7	0.61%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.595e-01	1.0000	6397.0	31.99%	15852.0	31.91%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-8.581e-01	1.0000	46.0	0.23%	109.9	0.22%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-8.548e-01	1.0000	423.0	2.11%	1038.3	2.09%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-8.526e-01	1.0000	628.0	3.14%	1545.5	3.11%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-8.480e-01	1.0000	566.0	2.83%	1392.6	2.80%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-8.418e-01	1.0000	1227.0	6.13%	3029.6	6.10%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-8.415e-01	1.0000	662.0	3.31%	1630.2	3.28%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-8.350e-01	1.0000	953.0	4.76%	2351.5	4.73%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.307e-01	1.0000	822.0	4.11%	2027.7	4.08%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-8.270e-01	1.0000	108.0	0.54%	262.6	0.53%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-8.252e-01	1.0000	402.0	2.01%	988.5	1.99%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-8.244e-01	1.0000	2458.0	12.29%	6083.9	12.25%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-8.177e-01	1.0000	2820.0	14.10%	6982.5	14.05%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-8.113e-01	1.0000	2535.0	12.68%	6276.8	12.63%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-8.109e-01	1.0000	1270.0	6.35%	3139.1	6.32%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-8.101e-01	1.0000	19775.0	98.88%	49113.3	98.86%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.101e-01	1.0000	480.0	2.40%	1183.0	2.38%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-8.076e-01	1.0000	1031.0	5.16%	2547.3	5.13%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-8.074e-01	1.0000	19.0	0.10%	44.4	0.09%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-8.014e-01	1.0000	166.0	0.83%	406.0	0.82%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-7.979e-01	1.0000	778.0	3.89%	1921.7	3.87%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-7.972e-01	1.0000	242.0	1.21%	594.8	1.20%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-7.944e-01	1.0000	7.0	0.03%	15.9	0.03%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-7.928e-01	1.0000	731.0	3.65%	1805.2	3.63%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-7.916e-01	1.0000	494.0	2.47%	1218.4	2.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-7.892e-01	1.0000	3375.0	16.88%	8364.5	16.84%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-7.836e-01	1.0000	677.0	3.38%	1672.0	3.37%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-7.811e-01	1.0000	687.0	3.44%	1697.2	3.42%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-7.811e-01	1.0000	79.0	0.40%	193.0	0.39%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-7.784e-01	1.0000	2545.0	12.72%	6307.0	12.70%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-7.722e-01	1.0000	10307.0	51.53%	25581.8	51.49%
Tal1	CATCTG	1e0	-7.711e-01	1.0000	2555.0	12.78%	6332.9	12.75%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-7.678e-01	1.0000	127.0	0.64%	311.2	0.63%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-7.652e-01	1.0000	95.0	0.47%	232.8	0.47%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-7.627e-01	1.0000	1780.0	8.90%	4410.7	8.88%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.626e-01	1.0000	364.0	1.82%	898.4	1.81%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-7.543e-01	1.0000	484.0	2.42%	1196.7	2.41%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-7.523e-01	1.0000	1750.0	8.75%	4337.6	8.73%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-7.492e-01	1.0000	1691.0	8.46%	4191.4	8.44%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-7.442e-01	1.0000	1152.0	5.76%	2854.6	5.75%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-7.432e-01	1.0000	19422.0	97.11%	48238.5	97.10%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-7.342e-01	1.0000	1525.0	7.62%	3781.6	7.61%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-7.327e-01	1.0000	1004.0	5.02%	2489.0	5.01%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-7.315e-01	1.0000	193.0	0.97%	476.5	0.96%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.304e-01	1.0000	23.0	0.11%	55.4	0.11%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.255e-01	1.0000	388.0	1.94%	960.9	1.93%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-7.211e-01	1.0000	14579.0	72.89%	36207.0	72.88%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-7.208e-01	1.0000	246.0	1.23%	608.6	1.23%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-7.177e-01	1.0000	557.0	2.79%	1380.2	2.78%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-7.140e-01	1.0000	35.0	0.18%	85.7	0.17%
SeqBias: CA-repeat	CACACACACA	1e0	-7.099e-01	1.0000	8750.0	43.75%	21729.0	43.74%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-6.953e-01	1.0000	181.0	0.91%	448.8	0.90%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.941e-01	1.0000	61.0	0.30%	151.0	0.30%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-6.940e-01	1.0000	402.0	2.01%	997.4	2.01%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-6.927e-01	1.0000	3313.0	16.56%	8228.9	16.56%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-6.918e-01	1.0000	1290.0	6.45%	3204.0	6.45%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.914e-01	1.0000	34.0	0.17%	83.2	0.17%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-6.911e-01	1.0000	1610.0	8.05%	3998.3	8.05%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-6.909e-01	1.0000	131.0	0.66%	324.6	0.65%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.890e-01	1.0000	839.0	4.20%	2083.1	4.19%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-6.888e-01	1.0000	2481.0	12.40%	6163.0	12.41%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-6.881e-01	1.0000	2299.0	11.49%	5710.1	11.49%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-6.809e-01	1.0000	1896.0	9.48%	4710.4	9.48%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-6.809e-01	1.0000	9.0	0.04%	21.4	0.04%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-6.773e-01	1.0000	1608.0	8.04%	3995.9	8.04%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-6.743e-01	1.0000	434.0	2.17%	1078.8	2.17%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-6.732e-01	1.0000	578.0	2.89%	1436.1	2.89%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-6.728e-01	1.0000	23.0	0.11%	56.0	0.11%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-6.712e-01	1.0000	158.0	0.79%	392.8	0.79%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-6.690e-01	1.0000	355.0	1.77%	882.1	1.78%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-6.671e-01	1.0000	1203.0	6.02%	2990.0	6.02%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-6.657e-01	1.0000	3073.0	15.37%	7637.6	15.37%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-6.653e-01	1.0000	521.0	2.60%	1295.9	2.61%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-6.624e-01	1.0000	720.0	3.60%	1790.6	3.60%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-6.600e-01	1.0000	366.0	1.83%	910.9	1.83%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-6.532e-01	1.0000	2363.0	11.82%	5875.8	11.83%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.518e-01	1.0000	150.0	0.75%	373.5	0.75%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-6.499e-01	1.0000	209.0	1.04%	520.1	1.05%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.454e-01	1.0000	2078.0	10.39%	5168.7	10.40%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-6.422e-01	1.0000	14.0	0.07%	34.5	0.07%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-6.360e-01	1.0000	856.0	4.28%	2131.2	4.29%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-6.359e-01	1.0000	1053.0	5.27%	2621.6	5.28%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-6.304e-01	1.0000	3621.0	18.11%	9006.4	18.13%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-6.300e-01	1.0000	1830.0	9.15%	4554.4	9.17%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e0	-6.293e-01	1.0000	6.0	0.03%	14.3	0.03%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-6.285e-01	1.0000	347.0	1.74%	865.7	1.74%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-6.277e-01	1.0000	1406.0	7.03%	3501.0	7.05%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.269e-01	1.0000	65.0	0.33%	162.5	0.33%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-6.232e-01	1.0000	677.0	3.38%	1687.7	3.40%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-6.217e-01	1.0000	736.0	3.68%	1834.0	3.69%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-6.182e-01	1.0000	2309.0	11.54%	5747.6	11.57%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-6.178e-01	1.0000	177.0	0.89%	442.3	0.89%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-6.178e-01	1.0000	635.0	3.17%	1584.0	3.19%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-6.177e-01	1.0000	588.0	2.94%	1466.8	2.95%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e0	-6.132e-01	1.0000	1250.0	6.25%	3114.5	6.27%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-6.121e-01	1.0000	2539.0	12.70%	6320.7	12.72%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.119e-01	1.0000	237.0	1.19%	592.6	1.19%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-6.050e-01	1.0000	443.0	2.21%	1106.7	2.23%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-5.997e-01	1.0000	11532.0	57.66%	28669.8	57.71%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-5.985e-01	1.0000	191.0	0.95%	478.9	0.96%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-5.976e-01	1.0000	1975.0	9.88%	4920.6	9.90%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-5.944e-01	1.0000	783.0	3.91%	1954.8	3.93%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-5.942e-01	1.0000	57.0	0.29%	143.7	0.29%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-5.898e-01	1.0000	190.0	0.95%	476.7	0.96%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-5.891e-01	1.0000	1419.0	7.09%	3538.8	7.12%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.890e-01	1.0000	3407.0	17.04%	8483.5	17.08%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-5.866e-01	1.0000	592.0	2.96%	1479.3	2.98%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-5.851e-01	1.0000	950.0	4.75%	2371.2	4.77%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-5.842e-01	1.0000	744.0	3.72%	1858.3	3.74%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-5.815e-01	1.0000	447.0	2.23%	1118.1	2.25%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-5.799e-01	1.0000	380.0	1.90%	951.2	1.91%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-5.795e-01	1.0000	475.0	2.38%	1188.3	2.39%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-5.791e-01	1.0000	125.0	0.62%	314.9	0.63%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-5.777e-01	1.0000	111.0	0.56%	279.6	0.56%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-5.699e-01	1.0000	3117.0	15.58%	7766.9	15.63%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.695e-01	1.0000	4405.0	22.02%	10969.3	22.08%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-5.653e-01	1.0000	430.0	2.15%	1077.9	2.17%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-5.647e-01	1.0000	837.0	4.18%	2092.1	4.21%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-5.628e-01	1.0000	57.0	0.29%	144.3	0.29%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-5.616e-01	1.0000	885.0	4.42%	2212.2	4.45%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-5.612e-01	1.0000	4740.0	23.70%	11804.1	23.76%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-5.608e-01	1.0000	611.0	3.06%	1529.5	3.08%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.574e-01	1.0000	272.0	1.36%	683.3	1.38%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-5.540e-01	1.0000	1563.0	7.81%	3902.8	7.86%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-5.539e-01	1.0000	68.0	0.34%	172.7	0.35%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-5.526e-01	1.0000	468.0	2.34%	1173.8	2.36%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.524e-01	1.0000	2253.0	11.27%	5620.1	11.31%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-5.513e-01	1.0000	1234.0	6.17%	3083.2	6.21%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.499e-01	1.0000	365.0	1.82%	916.8	1.85%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-5.474e-01	1.0000	926.0	4.63%	2316.7	4.66%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-5.438e-01	1.0000	1307.0	6.54%	3266.3	6.57%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-5.380e-01	1.0000	2910.0	14.55%	7258.2	14.61%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-5.379e-01	1.0000	90.0	0.45%	228.6	0.46%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-5.363e-01	1.0000	265.0	1.32%	667.3	1.34%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-5.357e-01	1.0000	850.0	4.25%	2128.1	4.28%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-5.347e-01	1.0000	158.0	0.79%	399.8	0.80%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-5.336e-01	1.0000	6704.0	33.52%	16694.4	33.60%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.323e-01	1.0000	924.0	4.62%	2313.6	4.66%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-5.236e-01	1.0000	2319.0	11.59%	5790.1	11.65%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-5.210e-01	1.0000	416.0	2.08%	1046.2	2.11%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-5.163e-01	1.0000	21.0	0.10%	54.2	0.11%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-5.096e-01	1.0000	638.0	3.19%	1603.0	3.23%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-5.087e-01	1.0000	845.0	4.23%	2119.1	4.27%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-5.085e-01	1.0000	3375.0	16.88%	8422.2	16.95%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.080e-01	1.0000	1468.0	7.34%	3673.9	7.40%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-5.010e-01	1.0000	622.0	3.11%	1563.4	3.15%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-4.992e-01	1.0000	301.0	1.50%	760.4	1.53%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-4.988e-01	1.0000	1999.0	9.99%	4998.2	10.06%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.952e-01	1.0000	1057.0	5.29%	2650.9	5.34%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-4.928e-01	1.0000	241.0	1.21%	610.3	1.23%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-4.912e-01	1.0000	1185.0	5.92%	2970.3	5.98%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-4.897e-01	1.0000	20.0	0.10%	52.9	0.11%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-4.856e-01	1.0000	199.0	1.00%	505.8	1.02%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-4.823e-01	1.0000	1275.0	6.38%	3196.5	6.43%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-4.762e-01	1.0000	2134.0	10.67%	5339.9	10.75%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-4.746e-01	1.0000	435.0	2.17%	1098.7	2.21%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.735e-01	1.0000	528.0	2.64%	1331.6	2.68%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-4.688e-01	1.0000	1331.0	6.65%	3338.8	6.72%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-4.682e-01	1.0000	776.0	3.88%	1953.0	3.93%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-4.642e-01	1.0000	2521.0	12.61%	6306.9	12.69%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-4.626e-01	1.0000	1743.0	8.71%	4367.2	8.79%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-4.570e-01	1.0000	1196.0	5.98%	3003.1	6.04%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.548e-01	1.0000	2545.0	12.72%	6368.8	12.82%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-4.538e-01	1.0000	364.0	1.82%	922.7	1.86%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-4.537e-01	1.0000	1954.0	9.77%	4895.9	9.85%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-4.523e-01	1.0000	1432.0	7.16%	3593.7	7.23%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-4.523e-01	1.0000	2493.0	12.46%	6239.9	12.56%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-4.519e-01	1.0000	4416.0	22.08%	11029.0	22.20%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.489e-01	1.0000	103.0	0.52%	265.3	0.53%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-4.478e-01	1.0000	32.0	0.16%	84.3	0.17%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-4.435e-01	1.0000	2294.0	11.47%	5745.4	11.56%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-4.427e-01	1.0000	358.0	1.79%	908.9	1.83%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-4.410e-01	1.0000	307.0	1.54%	780.0	1.57%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.391e-01	1.0000	42.0	0.21%	111.0	0.22%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.358e-01	1.0000	1597.0	7.99%	4008.9	8.07%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-4.318e-01	1.0000	2246.0	11.23%	5628.5	11.33%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-4.309e-01	1.0000	1159.0	5.79%	2915.5	5.87%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-4.297e-01	1.0000	1508.0	7.54%	3787.0	7.62%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-4.269e-01	1.0000	1670.0	8.35%	4192.8	8.44%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-4.269e-01	1.0000	99.0	0.50%	256.5	0.52%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-4.213e-01	1.0000	944.0	4.72%	2379.7	4.79%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-4.175e-01	1.0000	665.0	3.33%	1681.9	3.39%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-4.133e-01	1.0000	144.0	0.72%	371.7	0.75%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-4.131e-01	1.0000	11.0	0.06%	30.9	0.06%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-4.122e-01	1.0000	428.0	2.14%	1087.2	2.19%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.111e-01	1.0000	903.0	4.52%	2278.7	4.59%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-4.106e-01	1.0000	1358.0	6.79%	3416.8	6.88%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-4.105e-01	1.0000	1370.0	6.85%	3446.9	6.94%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-4.105e-01	1.0000	604.0	3.02%	1529.9	3.08%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-4.102e-01	1.0000	543.0	2.71%	1376.7	2.77%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-4.095e-01	1.0000	486.0	2.43%	1233.6	2.48%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.087e-01	1.0000	181.0	0.91%	465.8	0.94%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-4.085e-01	1.0000	435.0	2.17%	1105.5	2.23%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.081e-01	1.0000	25.0	0.12%	67.3	0.14%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-4.079e-01	1.0000	900.0	4.50%	2271.6	4.57%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-4.010e-01	1.0000	874.0	4.37%	2207.9	4.44%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-4.003e-01	1.0000	977.0	4.88%	2465.5	4.96%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-4.001e-01	1.0000	969.0	4.84%	2445.9	4.92%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.988e-01	1.0000	505.0	2.53%	1283.0	2.58%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.978e-01	1.0000	359.0	1.80%	915.2	1.84%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.943e-01	1.0000	3161.0	15.80%	7919.7	15.94%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-3.913e-01	1.0000	511.0	2.56%	1298.4	2.61%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-3.908e-01	1.0000	2612.0	13.06%	6551.8	13.19%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-3.907e-01	1.0000	321.0	1.60%	820.7	1.65%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-3.893e-01	1.0000	29.0	0.14%	78.2	0.16%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-3.884e-01	1.0000	1130.0	5.65%	2850.3	5.74%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.882e-01	1.0000	309.0	1.54%	790.6	1.59%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.882e-01	1.0000	309.0	1.54%	790.6	1.59%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-3.881e-01	1.0000	1784.0	8.92%	4485.9	9.03%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-3.870e-01	1.0000	1890.0	9.45%	4751.0	9.56%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-3.859e-01	1.0000	1141.0	5.71%	2878.2	5.79%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-3.845e-01	1.0000	146.0	0.73%	378.8	0.76%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-3.814e-01	1.0000	194.0	0.97%	500.5	1.01%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-3.750e-01	1.0000	387.0	1.93%	988.2	1.99%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-3.689e-01	1.0000	273.0	1.36%	701.1	1.41%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-3.682e-01	1.0000	166.0	0.83%	430.0	0.87%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.642e-01	1.0000	312.0	1.56%	800.1	1.61%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-3.599e-01	1.0000	478.0	2.39%	1219.2	2.45%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.590e-01	1.0000	150.0	0.75%	390.2	0.79%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-3.572e-01	1.0000	433.0	2.17%	1106.8	2.23%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-3.531e-01	1.0000	1093.0	5.46%	2764.3	5.56%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-3.522e-01	1.0000	10382.0	51.91%	25898.9	52.13%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-3.502e-01	1.0000	118.0	0.59%	309.3	0.62%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-3.465e-01	1.0000	1525.0	7.62%	3847.1	7.74%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.438e-01	1.0000	617.0	3.08%	1571.9	3.16%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.427e-01	1.0000	302.0	1.51%	777.0	1.56%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-3.426e-01	1.0000	574.0	2.87%	1463.6	2.95%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-3.394e-01	1.0000	3437.0	17.18%	8624.2	17.36%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-3.380e-01	1.0000	459.0	2.30%	1174.7	2.36%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-3.368e-01	1.0000	1636.0	8.18%	4127.3	8.31%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e0	-3.301e-01	1.0000	2461.0	12.31%	6191.3	12.46%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-3.278e-01	1.0000	1797.0	8.98%	4532.4	9.12%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.213e-01	1.0000	2725.0	13.63%	6853.1	13.79%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.204e-01	1.0000	699.0	3.50%	1781.9	3.59%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-3.202e-01	1.0000	1374.0	6.87%	3475.7	7.00%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.187e-01	1.0000	819.0	4.09%	2083.2	4.19%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-3.175e-01	1.0000	2165.0	10.82%	5455.9	10.98%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-3.175e-01	1.0000	840.0	4.20%	2136.2	4.30%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-3.168e-01	1.0000	1879.0	9.40%	4740.0	9.54%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.164e-01	1.0000	263.0	1.31%	681.3	1.37%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-3.162e-01	1.0000	1098.0	5.49%	2784.4	5.60%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-3.128e-01	1.0000	196.0	0.98%	511.9	1.03%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e0	-3.120e-01	1.0000	877.0	4.38%	2230.2	4.49%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-3.104e-01	1.0000	2081.0	10.41%	5247.2	10.56%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-3.100e-01	1.0000	744.0	3.72%	1896.2	3.82%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-3.089e-01	1.0000	568.0	2.84%	1453.6	2.93%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-3.059e-01	1.0000	139.0	0.69%	366.3	0.74%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.056e-01	1.0000	642.0	3.21%	1640.7	3.30%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-3.020e-01	1.0000	8.0	0.04%	25.0	0.05%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-2.958e-01	1.0000	106.0	0.53%	282.7	0.57%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.954e-01	1.0000	1201.0	6.00%	3047.1	6.13%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.946e-01	1.0000	648.0	3.24%	1657.4	3.34%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-2.944e-01	1.0000	2824.0	14.12%	7110.0	14.31%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.936e-01	1.0000	104.0	0.52%	277.8	0.56%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.919e-01	1.0000	649.0	3.25%	1660.2	3.34%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.914e-01	1.0000	306.0	1.53%	793.9	1.60%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-2.903e-01	1.0000	1920.0	9.60%	4850.5	9.76%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-2.885e-01	1.0000	3230.0	16.15%	8125.4	16.36%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-2.876e-01	1.0000	18.0	0.09%	52.2	0.11%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.870e-01	1.0000	1682.0	8.41%	4255.1	8.56%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-2.868e-01	1.0000	161.0	0.80%	424.8	0.85%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-2.856e-01	1.0000	8928.0	44.64%	22316.3	44.92%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.850e-01	1.0000	426.0	2.13%	1098.8	2.21%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-2.842e-01	1.0000	1988.0	9.94%	5022.4	10.11%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-2.837e-01	1.0000	260.0	1.30%	677.1	1.36%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-2.831e-01	1.0000	227.0	1.14%	593.7	1.20%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.796e-01	1.0000	1591.0	7.95%	4029.2	8.11%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-2.772e-01	1.0000	2428.0	12.14%	6125.1	12.33%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-2.764e-01	1.0000	1536.0	7.68%	3892.2	7.83%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.761e-01	1.0000	728.0	3.64%	1862.3	3.75%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-2.757e-01	1.0000	1184.0	5.92%	3009.2	6.06%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-2.746e-01	1.0000	395.0	1.98%	1021.4	2.06%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-2.710e-01	1.0000	1869.0	9.35%	4728.6	9.52%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.695e-01	1.0000	1271.0	6.35%	3229.1	6.50%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e0	-2.694e-01	1.0000	388.0	1.94%	1004.1	2.02%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.658e-01	1.0000	3428.0	17.14%	8628.1	17.37%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-2.654e-01	1.0000	797.0	3.98%	2038.1	4.10%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-2.646e-01	1.0000	1294.0	6.47%	3288.4	6.62%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.616e-01	1.0000	5763.0	28.82%	14453.0	29.09%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-2.589e-01	1.0000	361.0	1.80%	937.1	1.89%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-2.576e-01	1.0000	1451.0	7.26%	3684.2	7.42%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-2.566e-01	1.0000	734.0	3.67%	1881.8	3.79%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.553e-01	1.0000	1735.0	8.67%	4397.4	8.85%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.538e-01	1.0000	1742.0	8.71%	4415.3	8.89%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-2.531e-01	1.0000	488.0	2.44%	1260.9	2.54%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.524e-01	1.0000	565.0	2.83%	1455.7	2.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-2.522e-01	1.0000	1311.0	6.55%	3334.9	6.71%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.505e-01	1.0000	2342.0	11.71%	5919.8	11.92%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.500e-01	1.0000	856.0	4.28%	2191.0	4.41%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-2.486e-01	1.0000	2.0	0.01%	7.4	0.01%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-2.482e-01	1.0000	75.0	0.38%	205.3	0.41%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-2.479e-01	1.0000	1638.0	8.19%	4156.5	8.37%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.454e-01	1.0000	266.0	1.33%	697.0	1.40%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.443e-01	1.0000	20.0	0.10%	60.0	0.12%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.404e-01	1.0000	220.0	1.10%	580.4	1.17%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-2.392e-01	1.0000	2102.0	10.51%	5322.6	10.71%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-2.372e-01	1.0000	2563.0	12.81%	6477.7	13.04%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-2.342e-01	1.0000	920.0	4.60%	2355.1	4.74%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-2.306e-01	1.0000	926.0	4.63%	2371.3	4.77%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.298e-01	1.0000	223.0	1.11%	589.8	1.19%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.257e-01	1.0000	1039.0	5.20%	2657.8	5.35%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-2.242e-01	1.0000	4382.0	21.91%	11028.5	22.20%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.231e-01	1.0000	6.0	0.03%	20.6	0.04%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-2.217e-01	1.0000	411.0	2.05%	1070.7	2.16%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-2.206e-01	1.0000	47.0	0.24%	133.6	0.27%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.203e-01	1.0000	776.0	3.88%	1995.7	4.02%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-2.187e-01	1.0000	861.0	4.30%	2210.5	4.45%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-2.186e-01	1.0000	388.0	1.94%	1012.7	2.04%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-2.174e-01	1.0000	2790.0	13.95%	7053.4	14.20%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.174e-01	1.0000	847.0	4.23%	2175.3	4.38%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.168e-01	1.0000	1301.0	6.50%	3319.0	6.68%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-2.167e-01	1.0000	259.0	1.29%	683.2	1.38%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.167e-01	1.0000	1365.0	6.83%	3480.6	7.01%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-2.070e-01	1.0000	357.0	1.79%	936.0	1.88%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-2.065e-01	1.0000	346.0	1.73%	907.7	1.83%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.052e-01	1.0000	965.0	4.83%	2476.5	4.98%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.049e-01	1.0000	654.0	3.27%	1690.5	3.40%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-2.039e-01	1.0000	1458.0	7.29%	3718.0	7.48%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.018e-01	1.0000	213.0	1.06%	567.4	1.14%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-2.012e-01	1.0000	2084.0	10.42%	5291.8	10.65%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.997e-01	1.0000	3041.0	15.20%	7689.1	15.48%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.980e-01	1.0000	117.0	0.58%	319.2	0.64%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.977e-01	1.0000	515.0	2.57%	1339.2	2.70%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.977e-01	1.0000	826.0	4.13%	2127.1	4.28%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.967e-01	1.0000	2897.0	14.49%	7330.8	14.76%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.952e-01	1.0000	97.0	0.48%	267.3	0.54%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.952e-01	1.0000	97.0	0.48%	267.8	0.54%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-1.921e-01	1.0000	279.0	1.40%	738.8	1.49%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.894e-01	1.0000	337.0	1.69%	888.0	1.79%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-1.844e-01	1.0000	1742.0	8.71%	4440.0	8.94%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.840e-01	1.0000	440.0	2.20%	1151.1	2.32%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.814e-01	1.0000	9261.0	46.30%	23204.4	46.71%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-1.813e-01	1.0000	28.0	0.14%	84.6	0.17%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.806e-01	1.0000	1390.0	6.95%	3555.2	7.16%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.749e-01	1.0000	3114.0	15.57%	7884.1	15.87%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.706e-01	1.0000	808.0	4.04%	2089.3	4.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.703e-01	1.0000	395.0	1.98%	1039.1	2.09%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.693e-01	1.0000	151.0	0.76%	411.3	0.83%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.688e-01	1.0000	1207.0	6.04%	3098.9	6.24%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-1.686e-01	1.0000	1161.0	5.80%	2982.2	6.00%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.658e-01	1.0000	108.0	0.54%	300.0	0.60%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-1.645e-01	1.0000	190.0	0.95%	513.2	1.03%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.643e-01	1.0000	127.0	0.64%	349.6	0.70%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.639e-01	1.0000	281.0	1.41%	748.9	1.51%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-1.631e-01	1.0000	246.0	1.23%	658.3	1.33%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-1.628e-01	1.0000	843.0	4.21%	2180.2	4.39%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.614e-01	1.0000	540.0	2.70%	1411.4	2.84%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.545e-01	1.0000	1832.0	9.16%	4679.0	9.42%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.519e-01	1.0000	185.0	0.92%	502.2	1.01%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-1.491e-01	1.0000	283.0	1.42%	756.9	1.52%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.483e-01	1.0000	17.0	0.08%	55.3	0.11%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.483e-01	1.0000	262.0	1.31%	702.5	1.41%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.477e-01	1.0000	2092.0	10.46%	5335.6	10.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.460e-01	1.0000	655.0	3.28%	1708.7	3.44%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.456e-01	1.0000	536.0	2.68%	1405.1	2.83%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.436e-01	1.0000	488.0	2.44%	1283.9	2.58%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.422e-01	1.0000	5077.0	25.39%	12812.3	25.79%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-1.418e-01	1.0000	1106.0	5.53%	2853.1	5.74%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-1.409e-01	1.0000	212.0	1.06%	574.9	1.16%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.407e-01	1.0000	2050.0	10.25%	5234.0	10.54%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.398e-01	1.0000	436.0	2.18%	1151.9	2.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.392e-01	1.0000	1477.0	7.38%	3791.5	7.63%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.390e-01	1.0000	21.0	0.10%	67.6	0.14%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.390e-01	1.0000	609.0	3.04%	1593.6	3.21%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.369e-01	1.0000	408.0	2.04%	1080.6	2.18%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.340e-01	1.0000	63.0	0.32%	183.1	0.37%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-1.327e-01	1.0000	3364.0	16.82%	8535.2	17.18%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.325e-01	1.0000	355.0	1.77%	945.7	1.90%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-1.325e-01	1.0000	2823.0	14.12%	7179.0	14.45%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.323e-01	1.0000	265.0	1.32%	713.1	1.44%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-1.307e-01	1.0000	1173.0	5.87%	3027.4	6.09%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-1.292e-01	1.0000	1725.0	8.62%	4421.2	8.90%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.282e-01	1.0000	96.0	0.48%	272.1	0.55%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e0	-1.281e-01	1.0000	327.0	1.64%	874.8	1.76%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-1.274e-01	1.0000	6656.0	33.28%	16763.7	33.74%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.268e-01	1.0000	292.0	1.46%	784.2	1.58%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.263e-01	1.0000	168.0	0.84%	462.0	0.93%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-1.261e-01	1.0000	711.0	3.55%	1857.1	3.74%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.254e-01	1.0000	338.0	1.69%	903.8	1.82%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-1.246e-01	1.0000	889.0	4.45%	2310.4	4.65%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.240e-01	1.0000	1866.0	9.33%	4779.1	9.62%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.237e-01	1.0000	759.0	3.79%	1980.2	3.99%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-1.233e-01	1.0000	1581.0	7.90%	4061.3	8.17%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.207e-01	1.0000	355.0	1.77%	948.5	1.91%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-1.193e-01	1.0000	9567.0	47.84%	24015.9	48.34%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.186e-01	1.0000	646.0	3.23%	1694.5	3.41%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-1.186e-01	1.0000	11.0	0.06%	39.1	0.08%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.183e-01	1.0000	2656.0	13.28%	6769.6	13.63%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-1.175e-01	1.0000	1098.0	5.49%	2843.7	5.72%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-1.167e-01	1.0000	25.0	0.12%	80.2	0.16%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.154e-01	1.0000	1113.0	5.56%	2882.3	5.80%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-1.141e-01	1.0000	297.0	1.49%	800.7	1.61%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.140e-01	1.0000	448.0	2.24%	1189.1	2.39%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-1.136e-01	1.0000	1417.0	7.08%	3652.7	7.35%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.134e-01	1.0000	177.0	0.89%	489.0	0.98%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.108e-01	1.0000	1811.0	9.05%	4648.8	9.36%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.108e-01	1.0000	7.0	0.03%	27.7	0.06%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.107e-01	1.0000	47.0	0.24%	142.8	0.29%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-1.083e-01	1.0000	142.0	0.71%	398.0	0.80%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.054e-01	1.0000	346.0	1.73%	929.5	1.87%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-1.049e-01	1.0000	1391.0	6.96%	3591.4	7.23%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.037e-01	1.0000	150.0	0.75%	419.8	0.84%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-1.014e-01	1.0000	3257.0	16.29%	8290.2	16.69%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.012e-01	1.0000	453.0	2.27%	1206.2	2.43%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-9.995e-02	1.0000	216.0	1.08%	593.8	1.20%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-9.963e-02	1.0000	1727.0	8.63%	4443.1	8.94%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-9.954e-02	1.0000	860.0	4.30%	2247.4	4.52%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-9.944e-02	1.0000	1216.0	6.08%	3151.1	6.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-9.809e-02	1.0000	1395.0	6.98%	3605.4	7.26%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-9.736e-02	1.0000	491.0	2.46%	1305.7	2.63%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-9.732e-02	1.0000	261.0	1.31%	711.9	1.43%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-9.654e-02	1.0000	41.0	0.21%	127.1	0.26%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-9.608e-02	1.0000	697.0	3.48%	1833.2	3.69%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-9.588e-02	1.0000	733.0	3.67%	1925.5	3.88%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-9.454e-02	1.0000	3399.0	16.99%	8652.2	17.42%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-9.302e-02	1.0000	415.0	2.08%	1111.9	2.24%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-9.084e-02	1.0000	79.0	0.40%	232.1	0.47%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-8.693e-02	1.0000	365.0	1.82%	984.9	1.98%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-8.469e-02	1.0000	2220.0	11.10%	5697.7	11.47%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-8.406e-02	1.0000	145.0	0.73%	410.7	0.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-8.278e-02	1.0000	2373.0	11.87%	6084.2	12.25%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-8.073e-02	1.0000	368.0	1.84%	994.5	2.00%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-8.042e-02	1.0000	981.0	4.91%	2565.8	5.16%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-7.923e-02	1.0000	185.0	0.92%	517.1	1.04%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-7.896e-02	1.0000	1417.0	7.08%	3673.8	7.39%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-7.868e-02	1.0000	298.0	1.49%	813.7	1.64%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-7.867e-02	1.0000	122.0	0.61%	351.0	0.71%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-7.862e-02	1.0000	338.0	1.69%	917.1	1.85%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-7.848e-02	1.0000	1407.0	7.03%	3648.9	7.34%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-7.817e-02	1.0000	1689.0	8.45%	4362.6	8.78%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-7.664e-02	1.0000	62.0	0.31%	188.5	0.38%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.620e-02	1.0000	802.0	4.01%	2111.7	4.25%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-7.455e-02	1.0000	675.0	3.38%	1787.5	3.60%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-7.452e-02	1.0000	1411.0	7.05%	3661.4	7.37%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-7.388e-02	1.0000	1931.0	9.65%	4977.3	10.02%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.317e-02	1.0000	720.0	3.60%	1903.5	3.83%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-6.992e-02	1.0000	1278.0	6.39%	3327.4	6.70%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e0	-6.906e-02	1.0000	1096.0	5.48%	2865.5	5.77%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-6.893e-02	1.0000	19950.0	99.75%	49583.8	99.81%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.848e-02	1.0000	541.0	2.71%	1446.7	2.91%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-6.772e-02	1.0000	1249.0	6.25%	3255.4	6.55%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.736e-02	1.0000	946.0	4.73%	2484.2	5.00%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-6.620e-02	1.0000	320.0	1.60%	876.0	1.76%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-6.592e-02	1.0000	287.0	1.44%	789.8	1.59%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-6.589e-02	1.0000	36.0	0.18%	117.5	0.24%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-6.572e-02	1.0000	103.0	0.52%	302.7	0.61%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-6.429e-02	1.0000	532.0	2.66%	1425.3	2.87%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-6.418e-02	1.0000	506.0	2.53%	1359.0	2.74%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-6.381e-02	1.0000	1122.0	5.61%	2935.3	5.91%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-6.347e-02	1.0000	1501.0	7.51%	3898.1	7.85%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.194e-02	1.0000	241.0	1.21%	670.8	1.35%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-6.065e-02	1.0000	104.0	0.52%	307.0	0.62%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-5.984e-02	1.0000	922.0	4.61%	2428.9	4.89%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.840e-02	1.0000	154.0	0.77%	441.6	0.89%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-5.815e-02	1.0000	372.0	1.86%	1014.6	2.04%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-5.812e-02	1.0000	81.0	0.40%	244.4	0.49%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-5.792e-02	1.0000	1613.0	8.06%	4187.8	8.43%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-5.778e-02	1.0000	240.0	1.20%	669.7	1.35%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-5.699e-02	1.0000	249.0	1.24%	693.3	1.40%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-5.612e-02	1.0000	728.0	3.64%	1934.3	3.89%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-5.405e-02	1.0000	1535.0	7.67%	3993.9	8.04%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.267e-02	1.0000	2096.0	10.48%	5415.5	10.90%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-5.261e-02	1.0000	157.0	0.78%	451.3	0.91%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-5.186e-02	1.0000	205.0	1.03%	579.4	1.17%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-5.040e-02	1.0000	2355.0	11.77%	6072.7	12.22%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-5.026e-02	1.0000	675.0	3.38%	1802.3	3.63%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-5.000e-02	1.0000	1141.0	5.71%	2995.6	6.03%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-4.984e-02	1.0000	1790.0	8.95%	4644.2	9.35%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-4.831e-02	1.0000	4746.0	23.73%	12086.0	24.33%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-4.825e-02	1.0000	480.0	2.40%	1300.2	2.62%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.817e-02	1.0000	986.0	4.93%	2601.4	5.24%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.529e-02	1.0000	1120.0	5.60%	2946.2	5.93%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.485e-02	1.0000	211.0	1.05%	598.6	1.20%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.453e-02	1.0000	1590.0	7.95%	4143.0	8.34%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-4.402e-02	1.0000	1243.0	6.21%	3261.3	6.56%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-4.171e-02	1.0000	1061.0	5.30%	2799.7	5.64%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-4.151e-02	1.0000	644.0	3.22%	1729.3	3.48%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-4.005e-02	1.0000	1119.0	5.59%	2949.9	5.94%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.960e-02	1.0000	198.0	0.99%	566.7	1.14%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-3.779e-02	1.0000	3551.0	17.76%	9105.8	18.33%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-3.718e-02	1.0000	404.0	2.02%	1110.1	2.23%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-3.713e-02	1.0000	1214.0	6.07%	3195.7	6.43%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-3.634e-02	1.0000	74.0	0.37%	231.3	0.47%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-3.594e-02	1.0000	542.0	2.71%	1470.9	2.96%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-3.586e-02	1.0000	53.0	0.27%	172.5	0.35%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-3.579e-02	1.0000	167.0	0.83%	485.7	0.98%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-3.506e-02	1.0000	165.0	0.83%	480.7	0.97%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.471e-02	1.0000	768.0	3.84%	2055.1	4.14%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-3.452e-02	1.0000	1.0	0.01%	9.7	0.02%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-3.424e-02	1.0000	5.0	0.03%	26.8	0.05%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-3.360e-02	1.0000	269.0	1.34%	758.8	1.53%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-3.274e-02	1.0000	1987.0	9.93%	5167.1	10.40%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-3.252e-02	1.0000	520.0	2.60%	1416.5	2.85%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-3.236e-02	1.0000	8.0	0.04%	37.9	0.08%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.127e-02	1.0000	385.0	1.93%	1065.6	2.14%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-3.102e-02	1.0000	343.0	1.71%	955.1	1.92%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-3.101e-02	1.0000	11427.0	57.14%	28768.2	57.91%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-2.977e-02	1.0000	1404.0	7.02%	3690.5	7.43%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-2.895e-02	1.0000	427.0	2.14%	1177.9	2.37%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-2.799e-02	1.0000	19960.0	99.80%	49611.3	99.86%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-2.756e-02	1.0000	2861.0	14.31%	7388.5	14.87%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-2.736e-02	1.0000	1691.0	8.46%	4425.8	8.91%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	-2.680e-02	1.0000	320.0	1.60%	898.9	1.81%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-2.614e-02	1.0000	2515.0	12.57%	6517.1	13.12%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.430e-02	1.0000	160.0	0.80%	473.4	0.95%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.361e-02	1.0000	144.0	0.72%	430.3	0.87%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.344e-02	1.0000	749.0	3.74%	2020.3	4.07%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-2.222e-02	1.0000	1537.0	7.69%	4043.0	8.14%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e0	-2.189e-02	1.0000	2188.0	10.94%	5699.1	11.47%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-2.174e-02	1.0000	22.0	0.11%	85.0	0.17%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.171e-02	1.0000	110.0	0.55%	338.3	0.68%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-2.163e-02	1.0000	1686.0	8.43%	4424.4	8.91%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-2.122e-02	1.0000	310.0	1.55%	877.3	1.77%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e0	-2.086e-02	1.0000	732.0	3.66%	1980.0	3.99%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.063e-02	1.0000	2534.0	12.67%	6579.9	13.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.009e-02	1.0000	1552.0	7.76%	4086.4	8.23%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-2.003e-02	1.0000	592.0	2.96%	1618.1	3.26%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-2.000e-02	1.0000	279.0	1.40%	796.2	1.60%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-1.876e-02	1.0000	352.0	1.76%	991.3	2.00%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.815e-02	1.0000	412.0	2.06%	1150.0	2.31%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.814e-02	1.0000	1401.0	7.00%	3705.1	7.46%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.761e-02	1.0000	457.0	2.28%	1269.3	2.55%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.747e-02	1.0000	2275.0	11.38%	5932.6	11.94%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.723e-02	1.0000	2421.0	12.11%	6303.0	12.69%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-1.722e-02	1.0000	1320.0	6.60%	3501.0	7.05%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.681e-02	1.0000	4802.0	24.01%	12307.2	24.77%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.603e-02	1.0000	3606.0	18.03%	9302.7	18.72%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.578e-02	1.0000	1253.0	6.26%	3332.2	6.71%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-1.527e-02	1.0000	311.0	1.55%	887.0	1.79%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.512e-02	1.0000	1211.0	6.05%	3226.8	6.50%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-1.486e-02	1.0000	8.0	0.04%	41.5	0.08%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.389e-02	1.0000	698.0	3.49%	1905.4	3.84%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-1.363e-02	1.0000	248.0	1.24%	721.1	1.45%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.351e-02	1.0000	949.0	4.75%	2556.1	5.14%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-1.328e-02	1.0000	320.0	1.60%	914.9	1.84%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.313e-02	1.0000	69.0	0.34%	229.3	0.46%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.277e-02	1.0000	687.0	3.44%	1879.7	3.78%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.274e-02	1.0000	3.0	0.01%	22.2	0.04%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.250e-02	1.0000	186.0	0.93%	555.0	1.12%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-1.248e-02	1.0000	771.0	3.85%	2098.6	4.22%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-1.228e-02	1.0000	383.0	1.92%	1083.3	2.18%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.115e-02	1.0000	56.0	0.28%	193.5	0.39%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.111e-02	1.0000	1881.0	9.40%	4953.1	9.97%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.081e-02	1.0000	149.0	0.74%	456.9	0.92%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-1.013e-02	1.0000	485.0	2.43%	1357.2	2.73%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e0	-9.528e-03	1.0000	1489.0	7.45%	3958.2	7.97%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-9.367e-03	1.0000	474.0	2.37%	1330.7	2.68%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-9.129e-03	1.0000	289.0	1.44%	839.4	1.69%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-8.951e-03	1.0000	645.0	3.23%	1780.1	3.58%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e0	-8.769e-03	1.0000	799.0	4.00%	2182.9	4.39%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-7.714e-03	1.0000	162.0	0.81%	497.1	1.00%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-7.195e-03	1.0000	1637.0	8.19%	4349.9	8.76%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-7.084e-03	1.0000	105.0	0.53%	339.4	0.68%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-6.832e-03	1.0000	768.0	3.84%	2109.0	4.25%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.979e-03	1.0000	2307.0	11.54%	6068.0	12.21%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-5.544e-03	1.0000	349.0	1.75%	1010.2	2.03%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-5.286e-03	1.0000	749.0	3.74%	2067.8	4.16%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-5.268e-03	1.0000	42.0	0.21%	158.3	0.32%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-5.236e-03	1.0000	240.0	1.20%	718.0	1.45%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-5.026e-03	1.0000	1294.0	6.47%	3482.9	7.01%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-4.823e-03	1.0000	2221.0	11.11%	5859.2	11.79%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.808e-03	1.0000	188.0	0.94%	576.4	1.16%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-4.738e-03	1.0000	172.0	0.86%	532.0	1.07%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-4.171e-03	1.0000	970.0	4.85%	2650.6	5.34%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-3.958e-03	1.0000	119.0	0.60%	386.4	0.78%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-3.849e-03	1.0000	3639.0	18.20%	9470.9	19.06%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.444e-03	1.0000	838.0	4.19%	2312.4	4.65%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.050e-03	1.0000	2047.0	10.23%	5435.1	10.94%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.464e-03	1.0000	481.0	2.40%	1380.3	2.78%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-2.428e-03	1.0000	49.0	0.24%	187.0	0.38%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.421e-03	1.0000	2677.0	13.38%	7053.5	14.20%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-2.322e-03	1.0000	2657.0	13.29%	7004.7	14.10%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.211e-03	1.0000	2458.0	12.29%	6499.5	13.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.872e-03	1.0000	3.0	0.01%	29.8	0.06%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-1.847e-03	1.0000	194.0	0.97%	607.3	1.22%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-1.834e-03	1.0000	185.0	0.92%	582.8	1.17%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.810e-03	1.0000	300.0	1.50%	899.5	1.81%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-1.545e-03	1.0000	104.0	0.52%	354.9	0.71%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-1.497e-03	1.0000	523.0	2.61%	1503.9	3.03%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e0	-1.495e-03	1.0000	2039.0	10.20%	5444.5	10.96%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.486e-03	1.0000	1989.0	9.95%	5316.2	10.70%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.439e-03	1.0000	394.0	1.97%	1158.1	2.33%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-1.418e-03	1.0000	787.0	3.94%	2203.4	4.44%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-1.363e-03	1.0000	273.0	1.36%	830.6	1.67%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.157e-03	1.0000	890.0	4.45%	2479.4	4.99%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-8.820e-04	1.0000	83.0	0.41%	299.0	0.60%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.510e-04	1.0000	259.0	1.29%	799.3	1.61%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.400e-04	1.0000	805.0	4.03%	2265.0	4.56%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-7.820e-04	1.0000	1484.0	7.42%	4039.0	8.13%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-5.940e-04	1.0000	270.0	1.35%	835.8	1.68%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.840e-04	1.0000	273.0	1.36%	850.7	1.71%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e0	-3.660e-04	1.0000	2204.0	11.02%	5923.0	11.92%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e0	-3.470e-04	1.0000	1869.0	9.35%	5061.1	10.19%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.960e-04	1.0000	268.0	1.34%	841.0	1.69%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.820e-04	1.0000	942.0	4.71%	2664.6	5.36%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.610e-04	1.0000	515.0	2.57%	1527.0	3.07%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-8.200e-05	1.0000	216.0	1.08%	711.9	1.43%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e0	-6.800e-05	1.0000	1038.0	5.19%	2942.4	5.92%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-6.600e-05	1.0000	17.0	0.08%	102.1	0.21%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.200e-05	1.0000	503.0	2.51%	1531.0	3.08%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.000e-06	1.0000	109.0	0.55%	439.1	0.88%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	52.0	0.26%	321.1	0.65%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	49680.7	100.00%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	0.000e+00	1.0000	0.0	0.00%	2.6	0.01%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	0.000e+00	1.0000	0.0	0.00%	2.0	0.00%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	0.000e+00	1.0000	0.0	0.00%	4.7	0.01%