Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20006)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 18547)	% of Background Sequences with Motif
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-214	-4.943e+02	0.0000	3633.0	18.16%	1407.7	7.59%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-212	-4.888e+02	0.0000	3185.0	15.93%	1134.9	6.12%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-206	-4.744e+02	0.0000	4137.0	20.69%	1775.6	9.57%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-196	-4.517e+02	0.0000	4379.0	21.89%	1985.9	10.71%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-193	-4.464e+02	0.0000	4381.0	21.91%	1997.9	10.77%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-188	-4.332e+02	0.0000	2259.0	11.29%	669.0	3.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-183	-4.233e+02	0.0000	4607.0	23.04%	2205.0	11.89%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-179	-4.137e+02	0.0000	4617.0	23.09%	2233.9	12.04%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-176	-4.066e+02	0.0000	4703.0	23.52%	2311.8	12.46%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-153	-3.534e+02	0.0000	2463.0	12.31%	901.4	4.86%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-151	-3.481e+02	0.0000	2438.0	12.19%	894.0	4.82%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-146	-3.366e+02	0.0000	1154.0	5.77%	212.7	1.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-145	-3.359e+02	0.0000	3518.0	17.59%	1625.1	8.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-137	-3.157e+02	0.0000	2168.0	10.84%	781.2	4.21%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-136	-3.139e+02	0.0000	1593.0	7.96%	453.2	2.44%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-128	-2.969e+02	0.0000	4093.0	20.46%	2126.1	11.46%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-117	-2.698e+02	0.0000	4720.0	23.60%	2671.7	14.41%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-116	-2.673e+02	0.0000	918.0	4.59%	168.8	0.91%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-109	-2.533e+02	0.0000	1059.0	5.29%	248.0	1.34%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-108	-2.504e+02	0.0000	3842.0	19.21%	2062.6	11.12%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-102	-2.356e+02	0.0000	1098.0	5.49%	286.3	1.54%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-97	-2.249e+02	0.0000	670.0	3.35%	98.2	0.53%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-97	-2.239e+02	0.0000	1418.0	7.09%	477.6	2.58%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-93	-2.149e+02	0.0000	656.0	3.28%	100.3	0.54%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-86	-1.996e+02	0.0000	1178.0	5.89%	375.8	2.03%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-85	-1.977e+02	0.0000	3473.0	17.36%	1936.4	10.44%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-84	-1.954e+02	0.0000	380.0	1.90%	17.8	0.10%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-77	-1.786e+02	0.0000	4923.0	24.62%	3133.4	16.89%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-76	-1.761e+02	0.0000	625.0	3.12%	119.2	0.64%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-73	-1.689e+02	0.0000	3930.0	19.65%	2379.5	12.83%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-68	-1.588e+02	0.0000	409.0	2.04%	45.3	0.24%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-60	-1.403e+02	0.0000	2107.0	10.54%	1098.7	5.92%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-57	-1.315e+02	0.0000	778.0	3.89%	247.3	1.33%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-56	-1.291e+02	0.0000	437.0	2.19%	78.7	0.42%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-52	-1.199e+02	0.0000	990.0	4.95%	391.8	2.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-51	-1.188e+02	0.0000	1068.0	5.34%	442.5	2.39%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-48	-1.113e+02	0.0000	2414.0	12.07%	1413.3	7.62%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-48	-1.108e+02	0.0000	1584.0	7.92%	807.9	4.36%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-47	-1.095e+02	0.0000	189.0	0.95%	4.3	0.02%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-46	-1.081e+02	0.0000	1308.0	6.54%	623.4	3.36%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-46	-1.066e+02	0.0000	1675.0	8.38%	883.9	4.77%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-45	-1.038e+02	0.0000	1640.0	8.20%	866.2	4.67%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-43	-1.012e+02	0.0000	2693.0	13.46%	1664.2	8.97%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-42	-9.892e+01	0.0000	1880.0	9.40%	1055.9	5.69%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-42	-9.689e+01	0.0000	233.0	1.17%	22.4	0.12%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-41	-9.655e+01	0.0000	2269.0	11.34%	1355.5	7.31%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-38	-8.948e+01	0.0000	2344.0	11.72%	1439.4	7.76%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-38	-8.941e+01	0.0000	3668.0	18.34%	2495.2	13.45%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-38	-8.837e+01	0.0000	886.0	4.43%	387.6	2.09%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-38	-8.833e+01	0.0000	2164.0	10.82%	1305.3	7.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-37	-8.622e+01	0.0000	1790.0	8.95%	1030.1	5.55%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-36	-8.375e+01	0.0000	3293.0	16.46%	2217.7	11.96%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-36	-8.303e+01	0.0000	2913.0	14.56%	1914.6	10.32%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-35	-8.232e+01	0.0000	1285.0	6.42%	674.3	3.64%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-34	-7.980e+01	0.0000	3093.0	15.47%	2074.6	11.19%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-33	-7.786e+01	0.0000	1742.0	8.71%	1023.3	5.52%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-31	-7.301e+01	0.0000	684.0	3.42%	289.7	1.56%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-31	-7.271e+01	0.0000	1166.0	5.83%	617.7	3.33%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-31	-7.210e+01	0.0000	288.0	1.44%	64.0	0.35%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-31	-7.159e+01	0.0000	1281.0	6.40%	703.2	3.79%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-30	-7.083e+01	0.0000	927.0	4.63%	455.7	2.46%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-30	-7.075e+01	0.0000	639.0	3.19%	265.6	1.43%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-30	-7.040e+01	0.0000	877.0	4.38%	422.9	2.28%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-30	-7.016e+01	0.0000	420.0	2.10%	135.2	0.73%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-29	-6.680e+01	0.0000	1373.0	6.87%	786.9	4.24%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-28	-6.606e+01	0.0000	1738.0	8.69%	1064.4	5.74%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-28	-6.490e+01	0.0000	952.0	4.76%	488.4	2.63%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-26	-6.215e+01	0.0000	2022.0	10.11%	1301.5	7.02%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-26	-6.167e+01	0.0000	2308.0	11.54%	1530.8	8.25%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-26	-6.107e+01	0.0000	357.0	1.79%	113.2	0.61%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-26	-6.084e+01	0.0000	4551.0	22.75%	3400.3	18.33%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-25	-5.819e+01	0.0000	1641.0	8.21%	1021.1	5.51%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-25	-5.789e+01	0.0000	775.0	3.88%	384.2	2.07%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-24	-5.731e+01	0.0000	2471.0	12.35%	1683.9	9.08%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-24	-5.712e+01	0.0000	2920.0	14.60%	2051.7	11.06%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-24	-5.627e+01	0.0000	2358.0	11.79%	1597.4	8.61%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-24	-5.569e+01	0.0000	1271.0	6.35%	749.4	4.04%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-24	-5.540e+01	0.0000	308.0	1.54%	95.0	0.51%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-23	-5.488e+01	0.0000	2064.0	10.32%	1368.4	7.38%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-23	-5.465e+01	0.0000	3965.0	19.82%	2942.4	15.86%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-23	-5.364e+01	0.0000	1951.0	9.75%	1284.3	6.92%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-20	-4.803e+01	0.0000	832.0	4.16%	452.6	2.44%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-19	-4.555e+01	0.0000	1056.0	5.28%	625.4	3.37%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-19	-4.414e+01	0.0000	252.0	1.26%	79.6	0.43%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-18	-4.369e+01	0.0000	2733.0	13.66%	1978.0	10.66%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-18	-4.159e+01	0.0000	1966.0	9.83%	1358.3	7.32%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-17	-4.011e+01	0.0000	1809.0	9.04%	1239.3	6.68%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-17	-4.005e+01	0.0000	308.0	1.54%	118.1	0.64%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-17	-3.957e+01	0.0000	1244.0	6.22%	793.3	4.28%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-16	-3.902e+01	0.0000	280.0	1.40%	103.6	0.56%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-15	-3.673e+01	0.0000	424.0	2.12%	199.2	1.07%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-15	-3.673e+01	0.0000	1884.0	9.42%	1319.8	7.12%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-15	-3.546e+01	0.0000	1053.0	5.27%	663.2	3.58%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-13	-3.065e+01	0.0000	2359.0	11.79%	1753.3	9.45%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-13	-3.037e+01	0.0000	1927.0	9.63%	1394.1	7.52%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-13	-3.007e+01	0.0000	3056.0	15.28%	2350.1	12.67%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-12	-2.986e+01	0.0000	1000.0	5.00%	647.1	3.49%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-12	-2.978e+01	0.0000	733.0	3.67%	442.0	2.38%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-12	-2.953e+01	0.0000	2222.0	11.11%	1647.0	8.88%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-12	-2.832e+01	0.0000	2748.0	13.74%	2101.6	11.33%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-11	-2.742e+01	0.0000	1174.0	5.87%	797.5	4.30%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-11	-2.699e+01	0.0000	1101.0	5.50%	741.8	4.00%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-11	-2.669e+01	0.0000	1169.0	5.85%	797.1	4.30%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-11	-2.617e+01	0.0000	924.0	4.62%	605.6	3.27%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-11	-2.581e+01	0.0000	3761.0	18.80%	3000.2	16.18%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-10	-2.489e+01	0.0000	3137.0	15.68%	2466.8	13.30%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-10	-2.423e+01	0.0000	1949.0	9.74%	1456.7	7.85%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-10	-2.381e+01	0.0000	1213.0	6.07%	849.3	4.58%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-10	-2.305e+01	0.0000	2259.0	11.29%	1728.2	9.32%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-9	-2.170e+01	0.0000	578.0	2.89%	358.0	1.93%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-9	-2.113e+01	0.0000	567.0	2.83%	351.4	1.89%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-9	-2.112e+01	0.0000	3218.0	16.09%	2575.0	13.88%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-9	-2.111e+01	0.0000	2679.0	13.40%	2106.9	11.36%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e-9	-2.088e+01	0.0000	1433.0	7.17%	1049.5	5.66%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-8	-1.991e+01	0.0000	2464.0	12.32%	1932.3	10.42%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-8	-1.889e+01	0.0000	1298.0	6.49%	951.3	5.13%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e-8	-1.854e+01	0.0000	2474.0	12.37%	1955.0	10.54%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-7	-1.828e+01	0.0000	2614.0	13.07%	2078.9	11.21%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-7	-1.800e+01	0.0000	3361.0	16.80%	2734.2	14.74%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-7	-1.795e+01	0.0000	2312.0	11.56%	1820.5	9.82%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.777e+01	0.0000	993.0	4.96%	707.8	3.82%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-7	-1.722e+01	0.0000	442.0	2.21%	272.4	1.47%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-7	-1.712e+01	0.0000	1850.0	9.25%	1431.9	7.72%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e-7	-1.617e+01	0.0000	2320.0	11.60%	1845.3	9.95%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-6	-1.591e+01	0.0000	80.0	0.40%	24.8	0.13%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-6	-1.588e+01	0.0000	334.0	1.67%	196.9	1.06%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-6	-1.558e+01	0.0000	1748.0	8.74%	1358.2	7.32%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-6	-1.546e+01	0.0000	1498.0	7.49%	1146.3	6.18%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-6	-1.480e+01	0.0000	209.0	1.04%	109.6	0.59%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-6	-1.449e+01	0.0000	3009.0	15.04%	2468.0	13.31%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-6	-1.430e+01	0.0000	264.0	1.32%	150.6	0.81%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-6	-1.427e+01	0.0000	153.0	0.77%	73.0	0.39%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-6	-1.406e+01	0.0000	437.0	2.19%	282.9	1.53%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-6	-1.399e+01	0.0000	1078.0	5.39%	804.4	4.34%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-6	-1.396e+01	0.0000	959.0	4.79%	705.9	3.81%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-6	-1.388e+01	0.0000	584.0	2.92%	399.3	2.15%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-5	-1.374e+01	0.0000	227.0	1.14%	125.4	0.68%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-5	-1.364e+01	0.0000	446.0	2.23%	291.1	1.57%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-5	-1.350e+01	0.0000	657.0	3.28%	460.1	2.48%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-5	-1.302e+01	0.0000	1808.0	9.04%	1435.2	7.74%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-5	-1.200e+01	0.0000	1124.0	5.62%	859.0	4.63%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-4	-1.085e+01	0.0001	1398.0	6.99%	1104.8	5.96%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-4	-1.083e+01	0.0001	414.0	2.07%	280.2	1.51%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-4	-1.068e+01	0.0001	1103.0	5.51%	853.6	4.60%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-4	-1.048e+01	0.0002	3287.0	16.43%	2770.1	14.94%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-4	-1.029e+01	0.0002	4094.0	20.47%	3497.0	18.85%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-4	-1.001e+01	0.0003	442.0	2.21%	307.1	1.66%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-4	-9.714e+00	0.0004	276.0	1.38%	177.6	0.96%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-4	-9.684e+00	0.0004	495.0	2.48%	352.5	1.90%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-4	-9.636e+00	0.0004	1266.0	6.33%	1003.0	5.41%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-4	-9.606e+00	0.0004	755.0	3.77%	568.6	3.07%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-4	-9.396e+00	0.0005	467.0	2.33%	331.2	1.79%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-4	-9.269e+00	0.0006	766.0	3.83%	580.9	3.13%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-4	-9.248e+00	0.0006	2004.0	10.02%	1651.0	8.90%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-4	-9.221e+00	0.0006	706.0	3.53%	530.7	2.86%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e-3	-9.162e+00	0.0006	274.0	1.37%	178.2	0.96%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-3	-9.124e+00	0.0006	356.0	1.78%	243.3	1.31%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-3	-9.104e+00	0.0006	3228.0	16.14%	2740.7	14.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-3	-9.061e+00	0.0007	855.0	4.28%	657.7	3.55%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e-3	-9.019e+00	0.0007	1256.0	6.28%	1001.6	5.40%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-3	-9.006e+00	0.0007	296.0	1.48%	196.6	1.06%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-3	-8.835e+00	0.0008	713.0	3.56%	539.0	2.91%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-8.829e+00	0.0008	1111.0	5.56%	878.2	4.74%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-8.766e+00	0.0009	2795.0	13.98%	2359.8	12.72%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e-3	-8.413e+00	0.0012	902.0	4.51%	703.3	3.79%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-3	-8.385e+00	0.0013	1567.0	7.83%	1279.6	6.90%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-3	-8.247e+00	0.0014	1407.0	7.03%	1141.9	6.16%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-3	-8.244e+00	0.0014	1353.0	6.77%	1094.0	5.90%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-3	-8.232e+00	0.0015	346.0	1.73%	240.4	1.30%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-3	-8.153e+00	0.0016	364.0	1.82%	255.5	1.38%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-3	-8.114e+00	0.0016	329.0	1.65%	227.6	1.23%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-3	-8.097e+00	0.0016	807.0	4.04%	625.9	3.37%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-3	-8.052e+00	0.0017	653.0	3.26%	495.4	2.67%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-3	-8.042e+00	0.0017	291.0	1.46%	197.4	1.06%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-8.041e+00	0.0017	641.0	3.21%	485.3	2.62%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-3	-8.014e+00	0.0017	532.0	2.66%	394.5	2.13%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e-3	-7.939e+00	0.0019	1130.0	5.65%	904.1	4.87%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.821e+00	0.0021	1125.0	5.62%	901.4	4.86%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-3	-7.607e+00	0.0026	757.0	3.79%	587.7	3.17%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-3	-7.589e+00	0.0026	235.0	1.18%	155.7	0.84%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-3	-7.428e+00	0.0030	329.0	1.65%	231.3	1.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-7.336e+00	0.0033	173.0	0.86%	108.2	0.58%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-3	-7.129e+00	0.0040	43.0	0.21%	16.5	0.09%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-3	-7.092e+00	0.0042	533.0	2.67%	402.7	2.17%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-3	-7.083e+00	0.0042	200.0	1.00%	130.8	0.70%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-3	-7.015e+00	0.0045	254.0	1.27%	173.5	0.94%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-2	-6.820e+00	0.0054	625.0	3.12%	482.9	2.60%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-2	-6.724e+00	0.0059	1649.0	8.24%	1374.8	7.41%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-2	-6.628e+00	0.0065	630.0	3.15%	488.9	2.64%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-6.581e+00	0.0067	660.0	3.30%	514.1	2.77%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-2	-6.565e+00	0.0068	394.0	1.97%	290.1	1.56%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e-2	-6.557e+00	0.0068	2357.0	11.79%	2006.9	10.82%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-2	-6.518e+00	0.0071	4085.0	20.42%	3563.8	19.22%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-2	-6.392e+00	0.0080	532.0	2.66%	407.2	2.20%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e-2	-6.356e+00	0.0082	2670.0	13.35%	2290.3	12.35%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-2	-6.337e+00	0.0083	465.0	2.33%	351.6	1.90%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-2	-6.219e+00	0.0093	3246.0	16.23%	2811.5	15.16%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-2	-6.192e+00	0.0095	357.0	1.79%	262.9	1.42%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-2	-6.160e+00	0.0098	2484.0	12.42%	2127.8	11.47%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-2	-6.119e+00	0.0101	4099.0	20.50%	3585.5	19.33%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-2	-6.075e+00	0.0105	557.0	2.79%	431.6	2.33%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.073e+00	0.0105	498.0	2.49%	381.6	2.06%
SeqBias: GA-repeat	GAGAGAGAGA	1e-2	-5.967e+00	0.0116	11672.0	58.36%	10561.1	56.94%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-2	-5.910e+00	0.0123	1177.0	5.88%	970.6	5.23%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e-2	-5.910e+00	0.0123	1056.0	5.28%	864.5	4.66%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-2	-5.900e+00	0.0123	406.0	2.03%	305.0	1.64%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-2	-5.721e+00	0.0146	284.0	1.42%	205.7	1.11%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e-2	-5.670e+00	0.0153	5848.0	29.24%	5191.0	27.99%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-2	-5.630e+00	0.0158	1201.0	6.00%	995.4	5.37%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-5.611e+00	0.0161	805.0	4.03%	649.3	3.50%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.596e+00	0.0162	239.0	1.20%	169.8	0.92%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-5.588e+00	0.0163	106.0	0.53%	64.0	0.35%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e-2	-5.578e+00	0.0164	955.0	4.78%	780.1	4.21%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-5.569e+00	0.0164	7106.0	35.53%	6348.4	34.23%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-2	-5.437e+00	0.0187	1042.0	5.21%	858.5	4.63%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-2	-5.377e+00	0.0197	466.0	2.33%	360.3	1.94%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-5.334e+00	0.0205	378.0	1.89%	286.4	1.54%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-2	-5.271e+00	0.0217	2743.0	13.71%	2379.0	12.83%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-2	-5.206e+00	0.0231	750.0	3.75%	606.4	3.27%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-2	-5.189e+00	0.0234	2011.0	10.05%	1722.4	9.29%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-2	-5.147e+00	0.0243	2956.0	14.78%	2573.2	13.87%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e-2	-5.118e+00	0.0249	1062.0	5.31%	880.7	4.75%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-2	-5.105e+00	0.0251	315.0	1.57%	235.8	1.27%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-2	-5.055e+00	0.0263	3799.0	19.00%	3339.4	18.01%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.051e+00	0.0263	906.0	4.53%	745.0	4.02%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-2	-5.020e+00	0.0269	1411.0	7.05%	1190.7	6.42%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-2	-4.740e+00	0.0355	3946.0	19.73%	3481.6	18.77%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-4.688e+00	0.0372	1846.0	9.23%	1584.8	8.54%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-4.685e+00	0.0372	6070.0	30.35%	5424.5	29.25%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e-2	-4.684e+00	0.0372	401.0	2.00%	311.4	1.68%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e-2	-4.682e+00	0.0372	2419.0	12.10%	2099.3	11.32%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-2	-4.676e+00	0.0372	477.0	2.38%	376.2	2.03%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-1	-4.466e+00	0.0455	759.0	3.79%	623.4	3.36%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e-1	-4.444e+00	0.0463	1777.0	8.88%	1527.1	8.23%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-1	-4.379e+00	0.0492	3122.0	15.61%	2742.6	14.79%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-4.373e+00	0.0493	1330.0	6.65%	1129.6	6.09%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-4.358e+00	0.0498	443.0	2.21%	350.8	1.89%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-1	-4.328e+00	0.0511	189.0	0.95%	136.3	0.73%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.229e+00	0.0560	40.0	0.20%	20.7	0.11%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e-1	-4.229e+00	0.0560	40.0	0.20%	20.8	0.11%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-4.205e+00	0.0571	771.0	3.85%	638.0	3.44%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-4.202e+00	0.0571	2461.0	12.31%	2148.3	11.58%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-4.138e+00	0.0605	1682.0	8.41%	1448.8	7.81%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-1	-4.128e+00	0.0609	1860.0	9.30%	1608.8	8.67%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-4.118e+00	0.0612	19992.0	99.96%	18527.4	99.89%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-1	-4.096e+00	0.0624	1005.0	5.03%	846.0	4.56%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-4.076e+00	0.0634	1417.0	7.08%	1212.9	6.54%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-4.047e+00	0.0650	2637.0	13.18%	2311.2	12.46%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e-1	-4.044e+00	0.0650	3285.0	16.43%	2899.3	15.63%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-4.040e+00	0.0650	1057.0	5.29%	892.8	4.81%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-4.029e+00	0.0654	453.0	2.27%	363.0	1.96%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-3.995e+00	0.0674	624.0	3.12%	511.8	2.76%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-1	-3.987e+00	0.0676	329.0	1.65%	256.0	1.38%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e-1	-3.937e+00	0.0708	6.0	0.03%	0.5	0.00%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-1	-3.936e+00	0.0708	116.0	0.58%	79.3	0.43%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-1	-3.894e+00	0.0733	224.0	1.12%	168.1	0.91%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-1	-3.872e+00	0.0747	357.0	1.79%	281.7	1.52%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-1	-3.871e+00	0.0747	289.0	1.44%	223.6	1.21%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-3.855e+00	0.0754	916.0	4.58%	770.5	4.15%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-1	-3.788e+00	0.0803	377.0	1.88%	299.5	1.61%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-1	-3.735e+00	0.0843	1004.0	5.02%	850.8	4.59%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-3.726e+00	0.0847	1619.0	8.09%	1400.9	7.55%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-1	-3.706e+00	0.0862	383.0	1.92%	305.9	1.65%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-1	-3.696e+00	0.0867	1363.0	6.82%	1171.1	6.31%
SeqBias: CA-repeat	CACACACACA	1e-1	-3.681e+00	0.0876	8335.0	41.68%	7546.2	40.69%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.665e+00	0.0887	1842.0	9.21%	1602.9	8.64%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-1	-3.649e+00	0.0899	1917.0	9.59%	1670.9	9.01%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e-1	-3.646e+00	0.0899	66.0	0.33%	42.0	0.23%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.629e+00	0.0909	4244.0	21.22%	3787.0	20.42%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-3.564e+00	0.0967	196.0	0.98%	147.8	0.80%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-1	-3.551e+00	0.0977	1717.0	8.58%	1492.9	8.05%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-1	-3.532e+00	0.0991	600.0	3.00%	496.2	2.68%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-3.509e+00	0.1011	498.0	2.49%	407.1	2.20%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-3.435e+00	0.1084	30.0	0.15%	15.2	0.08%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-3.429e+00	0.1087	104.0	0.52%	72.7	0.39%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-1	-3.414e+00	0.1099	242.0	1.21%	187.4	1.01%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-3.394e+00	0.1118	284.0	1.42%	223.0	1.20%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e-1	-3.392e+00	0.1118	1908.0	9.54%	1668.6	9.00%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-1	-3.376e+00	0.1130	24.0	0.12%	11.6	0.06%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.375e+00	0.1130	2691.0	13.46%	2379.0	12.83%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-3.309e+00	0.1199	3544.0	17.72%	3157.9	17.03%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-3.303e+00	0.1202	141.0	0.70%	103.4	0.56%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-3.281e+00	0.1225	5.0	0.03%	0.0	0.00%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-1	-3.279e+00	0.1225	465.0	2.33%	381.1	2.05%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-3.244e+00	0.1263	225.0	1.12%	174.4	0.94%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-3.240e+00	0.1263	11.0	0.06%	3.3	0.02%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-1	-3.217e+00	0.1288	1205.0	6.02%	1039.4	5.60%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e-1	-3.208e+00	0.1295	690.0	3.45%	580.6	3.13%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-1	-3.176e+00	0.1332	1155.0	5.78%	995.9	5.37%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e-1	-3.135e+00	0.1382	2405.0	12.03%	2125.9	11.46%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-1	-3.098e+00	0.1431	3325.0	16.62%	2964.5	15.98%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-1	-3.095e+00	0.1431	37.0	0.18%	21.2	0.11%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-1	-3.093e+00	0.1431	542.0	2.71%	451.1	2.43%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-3.091e+00	0.1431	2180.0	10.90%	1922.6	10.37%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-1	-3.072e+00	0.1448	1824.0	9.12%	1600.7	8.63%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-1	-3.062e+00	0.1458	2461.0	12.31%	2178.3	11.74%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e-1	-3.057e+00	0.1460	1159.0	5.79%	1001.1	5.40%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e-1	-3.056e+00	0.1460	189.0	0.95%	145.5	0.78%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-1	-3.052e+00	0.1460	530.0	2.65%	441.6	2.38%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-3.051e+00	0.1460	598.0	2.99%	501.1	2.70%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-1	-3.048e+00	0.1460	5300.0	26.50%	4775.2	25.75%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-1	-3.037e+00	0.1465	190.0	0.95%	146.6	0.79%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e-1	-3.033e+00	0.1465	4336.0	21.68%	3892.0	20.98%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e-1	-3.018e+00	0.1484	484.0	2.42%	402.0	2.17%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-3.011e+00	0.1489	18963.0	94.81%	17513.0	94.43%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e-1	-2.981e+00	0.1529	2935.0	14.67%	2612.1	14.08%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-2.953e+00	0.1567	131.0	0.66%	97.1	0.52%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-2.940e+00	0.1583	182.0	0.91%	140.5	0.76%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-1	-2.917e+00	0.1613	231.0	1.16%	182.6	0.98%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e-1	-2.915e+00	0.1613	109.0	0.55%	79.1	0.43%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-1	-2.902e+00	0.1628	439.0	2.20%	363.5	1.96%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.866e+00	0.1682	40.0	0.20%	24.3	0.13%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-2.854e+00	0.1696	1231.0	6.16%	1070.7	5.77%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-1	-2.810e+00	0.1768	1261.0	6.30%	1098.8	5.92%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.792e+00	0.1794	204.0	1.02%	160.6	0.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.757e+00	0.1852	1646.0	8.23%	1447.3	7.80%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e-1	-2.728e+00	0.1901	706.0	3.53%	602.1	3.25%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.677e+00	0.1994	1140.0	5.70%	992.8	5.35%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-1	-2.661e+00	0.2021	424.0	2.12%	353.1	1.90%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e-1	-2.644e+00	0.2048	132.0	0.66%	100.2	0.54%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-1	-2.639e+00	0.2052	336.0	1.68%	276.7	1.49%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-1	-2.625e+00	0.2075	4.0	0.02%	0.0	0.00%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-1	-2.585e+00	0.2151	600.0	3.00%	510.9	2.75%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e-1	-2.585e+00	0.2151	834.0	4.17%	719.1	3.88%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-1	-2.531e+00	0.2258	1486.0	7.43%	1308.9	7.06%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-2.527e+00	0.2259	88.0	0.44%	64.6	0.35%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e-1	-2.515e+00	0.2279	2827.0	14.13%	2529.9	13.64%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.504e+00	0.2298	325.0	1.62%	268.8	1.45%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-1	-2.496e+00	0.2309	270.0	1.35%	220.0	1.19%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.482e+00	0.2334	114.0	0.57%	86.9	0.47%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e-1	-2.477e+00	0.2340	1311.0	6.55%	1151.3	6.21%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e-1	-2.468e+00	0.2355	500.0	2.50%	423.6	2.28%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e-1	-2.453e+00	0.2383	322.0	1.61%	266.1	1.43%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-1	-2.430e+00	0.2430	110.0	0.55%	83.7	0.45%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-1	-2.430e+00	0.2430	308.0	1.54%	254.5	1.37%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-1	-2.419e+00	0.2441	19358.0	96.79%	17904.8	96.54%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-1	-2.407e+00	0.2465	455.0	2.27%	384.2	2.07%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e-1	-2.387e+00	0.2507	22.0	0.11%	12.5	0.07%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e-1	-2.350e+00	0.2595	401.0	2.00%	337.8	1.82%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.343e+00	0.2604	1825.0	9.12%	1621.2	8.74%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.324e+00	0.2646	344.0	1.72%	287.7	1.55%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-2.310e+00	0.2677	654.0	3.27%	563.4	3.04%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-2.307e+00	0.2677	761.0	3.81%	659.2	3.55%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-2.299e+00	0.2690	256.0	1.28%	210.7	1.14%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-2.292e+00	0.2700	382.0	1.91%	321.1	1.73%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-2.288e+00	0.2705	1481.0	7.41%	1310.5	7.07%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-2.287e+00	0.2705	1172.0	5.86%	1030.2	5.55%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.284e+00	0.2705	1493.0	7.46%	1321.0	7.12%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-2.219e+00	0.2871	3109.0	15.54%	2798.2	15.09%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-2.218e+00	0.2871	170.0	0.85%	136.8	0.74%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-2.218e+00	0.2871	1286.0	6.43%	1135.2	6.12%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-2.190e+00	0.2931	1166.0	5.83%	1027.2	5.54%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-2.187e+00	0.2933	2129.0	10.64%	1903.1	10.26%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-2.157e+00	0.3014	182.0	0.91%	147.4	0.79%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-2.155e+00	0.3014	752.0	3.76%	654.7	3.53%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.153e+00	0.3014	3021.0	15.10%	2720.2	14.67%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.147e+00	0.3018	34.0	0.17%	22.6	0.12%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-2.126e+00	0.3073	1587.0	7.94%	1411.7	7.61%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.124e+00	0.3073	829.0	4.15%	724.0	3.90%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.120e+00	0.3074	140.0	0.70%	112.0	0.60%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-2.114e+00	0.3083	291.0	1.46%	243.1	1.31%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-2.091e+00	0.3149	337.0	1.69%	284.4	1.53%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-2.058e+00	0.3245	793.0	3.96%	693.5	3.74%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.055e+00	0.3245	5.0	0.03%	1.2	0.01%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.039e+00	0.3288	317.0	1.58%	267.5	1.44%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-2.024e+00	0.3329	946.0	4.73%	832.8	4.49%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-1.982e+00	0.3461	510.0	2.55%	440.2	2.37%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.978e+00	0.3466	120.0	0.60%	95.2	0.51%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.970e+00	0.3485	1439.0	7.20%	1281.9	6.91%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.927e+00	0.3627	1521.0	7.61%	1357.2	7.32%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.916e+00	0.3659	435.0	2.17%	374.6	2.02%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.911e+00	0.3666	1572.0	7.86%	1404.5	7.57%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-1.907e+00	0.3672	1619.0	8.09%	1447.8	7.81%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.903e+00	0.3675	2012.0	10.06%	1806.9	9.74%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-1.902e+00	0.3675	29.0	0.14%	19.5	0.11%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-1.893e+00	0.3693	57.0	0.29%	42.1	0.23%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-1.892e+00	0.3693	3116.0	15.58%	2818.1	15.19%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-1.885e+00	0.3705	469.0	2.34%	406.0	2.19%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.874e+00	0.3733	975.0	4.88%	862.0	4.65%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-1.867e+00	0.3751	84.0	0.42%	65.8	0.35%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-1.843e+00	0.3833	616.0	3.08%	539.0	2.91%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-1.835e+00	0.3852	107.0	0.53%	85.1	0.46%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-1.825e+00	0.3879	2981.0	14.90%	2697.9	14.55%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-1.813e+00	0.3918	21.0	0.10%	13.5	0.07%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.803e+00	0.3946	109.0	0.55%	87.9	0.47%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.799e+00	0.3951	824.0	4.12%	727.2	3.92%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.785e+00	0.3996	2265.0	11.33%	2042.9	11.01%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-1.781e+00	0.4005	723.0	3.62%	636.9	3.43%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.759e+00	0.4082	1503.0	7.51%	1346.4	7.26%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-1.753e+00	0.4096	503.0	2.51%	438.2	2.36%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.745e+00	0.4118	348.0	1.74%	299.7	1.62%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.727e+00	0.4181	854.0	4.27%	756.4	4.08%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-1.721e+00	0.4197	1357.0	6.78%	1214.4	6.55%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.717e+00	0.4204	362.0	1.81%	312.2	1.68%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-1.706e+00	0.4237	316.0	1.58%	271.4	1.46%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-1.685e+00	0.4317	133.0	0.66%	109.9	0.59%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.674e+00	0.4354	73.0	0.36%	57.7	0.31%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.668e+00	0.4372	1726.0	8.63%	1553.4	8.38%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.667e+00	0.4372	1138.0	5.69%	1016.4	5.48%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.633e+00	0.4503	507.0	2.54%	444.8	2.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.599e+00	0.4648	1082.0	5.41%	967.3	5.22%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.598e+00	0.4648	166.0	0.83%	139.4	0.75%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.597e+00	0.4648	304.0	1.52%	262.1	1.41%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.574e+00	0.4730	64.0	0.32%	50.7	0.27%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.561e+00	0.4777	224.0	1.12%	191.6	1.03%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.551e+00	0.4813	4.0	0.02%	1.7	0.01%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-1.548e+00	0.4816	432.0	2.16%	378.6	2.04%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.526e+00	0.4911	257.0	1.29%	221.2	1.19%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e0	-1.520e+00	0.4931	2487.0	12.44%	2257.4	12.17%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-1.491e+00	0.5063	108.0	0.54%	89.7	0.48%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.481e+00	0.5099	394.0	1.97%	345.5	1.86%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-1.479e+00	0.5100	374.0	1.87%	327.7	1.77%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.470e+00	0.5131	246.0	1.23%	212.9	1.15%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-1.457e+00	0.5188	3798.0	18.99%	3467.9	18.70%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.445e+00	0.5240	572.0	2.86%	507.0	2.73%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.444e+00	0.5240	202.0	1.01%	173.7	0.94%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-1.437e+00	0.5253	445.0	2.23%	392.8	2.12%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.418e+00	0.5344	1219.0	6.09%	1098.4	5.92%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e0	-1.411e+00	0.5367	647.0	3.23%	576.1	3.11%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-1.387e+00	0.5485	1303.0	6.51%	1176.4	6.34%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-1.383e+00	0.5496	9049.0	45.25%	8327.3	44.90%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.378e+00	0.5507	118.0	0.59%	99.2	0.53%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.369e+00	0.5545	761.0	3.81%	681.3	3.67%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.356e+00	0.5603	378.0	1.89%	334.0	1.80%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.353e+00	0.5608	10231.0	51.15%	9425.4	50.82%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.342e+00	0.5656	522.0	2.61%	464.7	2.51%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.324e+00	0.5747	1009.0	5.04%	909.4	4.90%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.322e+00	0.5747	1356.0	6.78%	1227.8	6.62%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.318e+00	0.5755	171.0	0.85%	147.6	0.80%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-1.312e+00	0.5772	2.0	0.01%	0.0	0.00%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.311e+00	0.5772	1900.0	9.50%	1727.4	9.31%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-1.282e+00	0.5923	4649.0	23.24%	4263.2	22.99%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.279e+00	0.5929	1027.0	5.13%	927.3	5.00%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.269e+00	0.5972	67.0	0.34%	55.9	0.30%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.266e+00	0.5978	188.0	0.94%	163.3	0.88%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-1.261e+00	0.5994	2571.0	12.86%	2347.9	12.66%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-1.259e+00	0.5994	292.0	1.46%	257.5	1.39%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-1.259e+00	0.5994	292.0	1.46%	257.5	1.39%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-1.247e+00	0.6036	4798.0	23.99%	4403.0	23.74%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.224e+00	0.6159	1489.0	7.45%	1353.2	7.30%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-1.217e+00	0.6191	1077.0	5.38%	975.2	5.26%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.206e+00	0.6244	2315.0	11.58%	2114.5	11.40%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.203e+00	0.6252	748.0	3.74%	674.0	3.63%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.193e+00	0.6298	634.0	3.17%	570.7	3.08%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-1.185e+00	0.6335	180.0	0.90%	157.2	0.85%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.180e+00	0.6354	1057.0	5.29%	958.0	5.17%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-1.173e+00	0.6381	3930.0	19.65%	3607.0	19.45%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-1.171e+00	0.6381	548.0	2.74%	492.7	2.66%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.171e+00	0.6381	377.0	1.88%	336.6	1.81%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-1.158e+00	0.6435	19949.0	99.74%	18493.2	99.71%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-1.158e+00	0.6435	921.0	4.61%	834.1	4.50%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.140e+00	0.6523	219.0	1.09%	193.7	1.04%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.139e+00	0.6523	465.0	2.33%	417.6	2.25%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.139e+00	0.6523	465.0	2.33%	417.6	2.25%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-1.136e+00	0.6523	420.0	2.10%	376.4	2.03%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.129e+00	0.6535	189.0	0.95%	166.7	0.90%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.108e+00	0.6665	28.0	0.14%	22.9	0.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.101e+00	0.6693	304.0	1.52%	271.8	1.47%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.090e+00	0.6751	515.0	2.57%	464.2	2.50%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.079e+00	0.6812	332.0	1.66%	297.9	1.61%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.077e+00	0.6812	124.0	0.62%	108.7	0.59%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.059e+00	0.6923	280.0	1.40%	250.8	1.35%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.044e+00	0.7013	2196.0	10.98%	2013.4	10.86%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.042e+00	0.7013	68.0	0.34%	58.3	0.31%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.040e+00	0.7013	78.0	0.39%	67.2	0.36%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.040e+00	0.7013	3839.0	19.20%	3531.3	19.04%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-1.036e+00	0.7013	355.0	1.77%	319.1	1.72%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.029e+00	0.7039	9.0	0.04%	6.3	0.03%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.022e+00	0.7073	70.0	0.35%	60.2	0.32%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-1.006e+00	0.7174	728.0	3.64%	662.8	3.57%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-9.914e-01	0.7264	204.0	1.02%	182.3	0.98%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-9.788e-01	0.7340	139.0	0.69%	123.0	0.66%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-9.663e-01	0.7417	2110.0	10.55%	1938.3	10.45%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.608e-01	0.7442	199.0	1.00%	178.4	0.96%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-9.580e-01	0.7447	2603.0	13.01%	2394.5	12.91%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-9.507e-01	0.7486	552.0	2.76%	502.5	2.71%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-9.473e-01	0.7496	2546.0	12.73%	2342.2	12.63%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-9.406e-01	0.7530	1567.0	7.83%	1438.2	7.75%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-9.358e-01	0.7551	2002.0	10.01%	1840.8	9.93%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-9.253e-01	0.7615	1097.0	5.49%	1005.0	5.42%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-9.236e-01	0.7615	126.0	0.63%	112.2	0.61%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.909e-01	0.7848	678.0	3.39%	620.4	3.34%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-8.888e-01	0.7848	14960.0	74.80%	13853.8	74.70%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-8.821e-01	0.7885	2416.0	12.08%	2226.5	12.00%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-8.776e-01	0.7904	697.0	3.48%	638.3	3.44%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-8.673e-01	0.7969	689.0	3.45%	631.3	3.40%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-8.664e-01	0.7969	383.0	1.92%	349.2	1.88%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-8.661e-01	0.7969	209.0	1.04%	189.7	1.02%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.657e-01	0.7969	1224.0	6.12%	1125.3	6.07%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-8.653e-01	0.7969	197.0	0.98%	178.7	0.96%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-8.616e-01	0.7969	499.0	2.50%	456.9	2.46%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-8.541e-01	0.7977	592.0	2.96%	542.9	2.93%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-8.490e-01	0.8001	1738.0	8.69%	1601.5	8.63%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-8.391e-01	0.8065	547.0	2.73%	501.6	2.70%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-8.341e-01	0.8089	7755.0	38.77%	7175.9	38.69%
SeqBias: CG bias	SSSSSSSSSS	1e0	-8.247e-01	0.8149	13304.0	66.52%	12322.6	66.44%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-8.239e-01	0.8149	133.0	0.66%	120.6	0.65%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-8.185e-01	0.8167	1109.0	5.54%	1021.9	5.51%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.162e-01	0.8169	688.0	3.44%	632.8	3.41%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-8.156e-01	0.8169	98.0	0.49%	88.9	0.48%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-7.877e-01	0.8372	544.0	2.72%	500.3	2.70%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-7.856e-01	0.8372	1708.0	8.54%	1577.2	8.50%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.851e-01	0.8372	335.0	1.68%	307.0	1.66%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.808e-01	0.8379	168.0	0.84%	153.8	0.83%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-7.801e-01	0.8379	574.0	2.87%	528.8	2.85%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-7.799e-01	0.8379	1282.0	6.41%	1183.0	6.38%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.611e-01	0.8496	33.0	0.17%	29.7	0.16%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-7.607e-01	0.8496	83.0	0.41%	75.1	0.40%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-7.573e-01	0.8496	1339.0	6.69%	1237.0	6.67%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-7.419e-01	0.8609	338.0	1.69%	311.7	1.68%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-7.354e-01	0.8648	11.0	0.06%	9.8	0.05%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-7.201e-01	0.8764	51.0	0.26%	46.0	0.25%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-7.099e-01	0.8837	419.0	2.10%	387.4	2.09%
Tal1	CATCTG	1e0	-7.089e-01	0.8837	2199.0	11.00%	2038.0	10.99%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-7.089e-01	0.8837	188.0	0.94%	173.7	0.94%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-7.034e-01	0.8843	463.0	2.31%	429.0	2.31%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-6.878e-01	0.8965	581.0	2.90%	538.9	2.91%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-6.854e-01	0.8969	140.0	0.70%	129.2	0.70%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-6.838e-01	0.8969	29.0	0.14%	26.6	0.14%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-6.798e-01	0.8985	945.0	4.72%	876.6	4.73%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-6.797e-01	0.8985	9032.0	45.16%	8376.5	45.16%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-6.598e-01	0.9131	415.0	2.08%	385.6	2.08%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-6.520e-01	0.9185	3588.0	17.94%	3330.6	17.96%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-6.504e-01	0.9185	476.0	2.38%	442.6	2.39%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-6.486e-01	0.9185	3371.0	16.86%	3129.2	16.87%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-6.481e-01	0.9185	688.0	3.44%	639.7	3.45%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.469e-01	0.9185	3747.0	18.73%	3478.6	18.76%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-6.411e-01	0.9198	325.0	1.62%	302.5	1.63%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-6.380e-01	0.9209	511.0	2.56%	475.5	2.56%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-6.183e-01	0.9374	1610.0	8.05%	1497.9	8.08%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-6.143e-01	0.9394	994.0	4.97%	925.7	4.99%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-6.113e-01	0.9405	1053.0	5.27%	980.7	5.29%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-6.098e-01	0.9405	208.0	1.04%	194.5	1.05%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-6.019e-01	0.9457	1160.0	5.80%	1080.8	5.83%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-5.961e-01	0.9495	6.0	0.03%	5.8	0.03%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-5.765e-01	0.9665	548.0	2.74%	512.2	2.76%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-5.748e-01	0.9665	161.0	0.80%	151.5	0.82%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-5.718e-01	0.9675	755.0	3.77%	705.5	3.80%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-5.677e-01	0.9696	627.0	3.14%	586.7	3.16%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-5.614e-01	0.9739	1526.0	7.63%	1424.0	7.68%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-5.611e-01	0.9739	1125.0	5.62%	1050.2	5.66%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-5.556e-01	0.9760	782.0	3.91%	731.4	3.94%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.524e-01	0.9773	13.0	0.07%	12.6	0.07%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-5.491e-01	0.9787	402.0	2.01%	377.4	2.04%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-5.455e-01	0.9804	539.0	2.70%	505.2	2.72%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-5.422e-01	0.9819	1186.0	5.93%	1108.7	5.98%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-5.421e-01	0.9819	1244.0	6.22%	1162.8	6.27%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-5.384e-01	0.9820	4774.0	23.87%	4443.9	23.96%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-5.295e-01	0.9890	1387.0	6.93%	1296.2	6.99%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.247e-01	0.9902	115.0	0.57%	109.7	0.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.247e-01	0.9902	115.0	0.57%	109.7	0.59%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-5.204e-01	0.9926	929.0	4.64%	870.3	4.69%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-5.142e-01	0.9970	1170.0	5.85%	1095.7	5.91%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-5.138e-01	0.9970	362.0	1.81%	341.6	1.84%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-5.124e-01	0.9970	154.0	0.77%	146.4	0.79%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.085e-01	0.9972	222.0	1.11%	210.7	1.14%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-5.063e-01	0.9977	4112.0	20.56%	3832.8	20.67%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-4.986e-01	1.0000	276.0	1.38%	261.6	1.41%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-4.877e-01	1.0000	473.0	2.37%	446.1	2.41%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-4.866e-01	1.0000	613.0	3.06%	577.6	3.11%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-4.832e-01	1.0000	114.0	0.57%	109.4	0.59%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-4.786e-01	1.0000	1237.0	6.19%	1160.1	6.26%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-4.731e-01	1.0000	190.0	0.95%	181.1	0.98%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-4.694e-01	1.0000	4728.0	23.64%	4409.0	23.77%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-4.687e-01	1.0000	1925.0	9.62%	1802.5	9.72%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-4.606e-01	1.0000	987.0	4.93%	928.6	5.01%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-4.503e-01	1.0000	289.0	1.44%	275.8	1.49%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-4.435e-01	1.0000	344.0	1.72%	327.3	1.76%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-4.419e-01	1.0000	1474.0	7.37%	1384.6	7.47%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-4.349e-01	1.0000	1943.0	9.71%	1822.6	9.83%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.337e-01	1.0000	283.0	1.42%	270.5	1.46%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-4.299e-01	1.0000	1279.0	6.40%	1203.5	6.49%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-4.284e-01	1.0000	6920.0	34.60%	6451.4	34.78%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.278e-01	1.0000	15.0	0.07%	15.2	0.08%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-4.261e-01	1.0000	698.0	3.49%	660.4	3.56%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-4.256e-01	1.0000	18.0	0.09%	18.2	0.10%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-4.242e-01	1.0000	1751.0	8.76%	1644.7	8.87%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-4.207e-01	1.0000	239.0	1.20%	229.1	1.24%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.200e-01	1.0000	970.0	4.85%	915.3	4.94%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-4.189e-01	1.0000	878.0	4.39%	829.3	4.47%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-4.161e-01	1.0000	148.0	0.74%	143.8	0.78%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-4.158e-01	1.0000	1778.0	8.89%	1670.4	9.01%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-4.152e-01	1.0000	499.0	2.50%	474.2	2.56%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-4.075e-01	1.0000	173.0	0.86%	167.2	0.90%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-4.065e-01	1.0000	4454.0	22.27%	4163.8	22.45%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-4.052e-01	1.0000	458.0	2.29%	436.3	2.35%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-4.049e-01	1.0000	1003.0	5.01%	947.3	5.11%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.947e-01	1.0000	40.0	0.20%	40.6	0.22%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-3.941e-01	1.0000	330.0	1.65%	316.0	1.70%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.939e-01	1.0000	2169.0	10.85%	2037.9	10.99%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-3.898e-01	1.0000	4.0	0.02%	4.9	0.03%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-3.897e-01	1.0000	1239.0	6.19%	1169.1	6.30%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-3.854e-01	1.0000	283.0	1.42%	272.2	1.47%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-3.823e-01	1.0000	1015.0	5.08%	960.1	5.18%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.773e-01	1.0000	717.0	3.58%	681.4	3.67%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-3.736e-01	1.0000	2811.0	14.06%	2638.2	14.22%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-3.727e-01	1.0000	2798.0	13.99%	2626.2	14.16%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-3.717e-01	1.0000	1217.0	6.08%	1150.8	6.20%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.655e-01	1.0000	182.0	0.91%	177.2	0.96%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-3.630e-01	1.0000	375.0	1.88%	360.9	1.95%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-3.607e-01	1.0000	552.0	2.76%	527.0	2.84%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.577e-01	1.0000	325.0	1.62%	313.5	1.69%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-3.559e-01	1.0000	540.0	2.70%	516.5	2.78%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-3.542e-01	1.0000	744.0	3.72%	708.6	3.82%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-3.487e-01	1.0000	1187.0	5.93%	1124.4	6.06%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-3.487e-01	1.0000	2308.0	11.54%	2172.9	11.72%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-3.406e-01	1.0000	660.0	3.30%	631.0	3.40%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-3.401e-01	1.0000	910.0	4.55%	865.0	4.66%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.388e-01	1.0000	324.0	1.62%	313.2	1.69%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.356e-01	1.0000	43.0	0.21%	44.6	0.24%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-3.348e-01	1.0000	44.0	0.22%	45.4	0.24%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-3.308e-01	1.0000	723.0	3.62%	690.6	3.72%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-3.297e-01	1.0000	1826.0	9.13%	1725.0	9.30%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-3.255e-01	1.0000	237.0	1.19%	231.3	1.25%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-3.246e-01	1.0000	1789.0	8.95%	1690.5	9.11%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-3.127e-01	1.0000	1275.0	6.38%	1210.9	6.53%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-3.098e-01	1.0000	9.0	0.04%	10.9	0.06%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.027e-01	1.0000	260.0	1.30%	254.3	1.37%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-3.010e-01	1.0000	798.0	3.99%	763.3	4.12%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-3.006e-01	1.0000	145.0	0.73%	144.9	0.78%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-2.993e-01	1.0000	6413.0	32.06%	6003.4	32.37%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.962e-01	1.0000	736.0	3.68%	705.7	3.81%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-2.870e-01	1.0000	381.0	1.91%	370.2	2.00%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-2.855e-01	1.0000	50.0	0.25%	52.2	0.28%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.829e-01	1.0000	2885.0	14.42%	2720.1	14.67%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-2.801e-01	1.0000	2126.0	10.63%	2011.0	10.84%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-2.789e-01	1.0000	2453.0	12.26%	2318.0	12.50%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-2.768e-01	1.0000	394.0	1.97%	383.8	2.07%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-2.718e-01	1.0000	339.0	1.70%	331.2	1.79%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-2.708e-01	1.0000	1068.0	5.34%	1020.8	5.50%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.703e-01	1.0000	758.0	3.79%	728.0	3.93%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-2.700e-01	1.0000	1595.0	7.98%	1515.5	8.17%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.689e-01	1.0000	1549.0	7.75%	1472.0	7.94%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-2.645e-01	1.0000	186.0	0.93%	185.2	1.00%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-2.636e-01	1.0000	10485.0	52.42%	9791.3	52.79%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-2.619e-01	1.0000	2183.0	10.91%	2067.1	11.15%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-2.605e-01	1.0000	792.0	3.96%	761.1	4.10%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-2.576e-01	1.0000	1734.0	8.67%	1647.4	8.88%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-2.556e-01	1.0000	542.0	2.71%	525.6	2.83%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.542e-01	1.0000	3216.0	16.08%	3034.0	16.36%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.426e-01	1.0000	70.0	0.35%	73.0	0.39%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-2.388e-01	1.0000	1970.0	9.85%	1871.2	10.09%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-2.373e-01	1.0000	1235.0	6.17%	1181.9	6.37%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-2.310e-01	1.0000	641.0	3.21%	621.5	3.35%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-2.301e-01	1.0000	1165.0	5.83%	1116.0	6.02%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-2.295e-01	1.0000	663.0	3.31%	642.4	3.46%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.294e-01	1.0000	1488.0	7.44%	1420.7	7.66%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-2.279e-01	1.0000	1187.0	5.93%	1137.3	6.13%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-2.276e-01	1.0000	1375.0	6.88%	1314.7	7.09%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-2.265e-01	1.0000	2209.0	11.04%	2097.7	11.31%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-2.187e-01	1.0000	997.0	4.98%	959.9	5.18%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-2.187e-01	1.0000	1860.0	9.30%	1771.8	9.55%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-2.142e-01	1.0000	8.0	0.04%	10.9	0.06%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.109e-01	1.0000	1799.0	9.00%	1715.6	9.25%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-2.072e-01	1.0000	648.0	3.24%	630.8	3.40%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-2.061e-01	1.0000	100.0	0.50%	104.8	0.57%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-2.046e-01	1.0000	808.0	4.04%	782.6	4.22%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-2.033e-01	1.0000	16.0	0.08%	19.3	0.10%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.014e-01	1.0000	1642.0	8.21%	1569.6	8.46%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-1.999e-01	1.0000	1076.0	5.38%	1036.5	5.59%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.972e-01	1.0000	368.0	1.84%	365.0	1.97%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-1.926e-01	1.0000	180.0	0.90%	183.1	0.99%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.920e-01	1.0000	2261.0	11.30%	2152.5	11.61%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-1.900e-01	1.0000	519.0	2.60%	509.3	2.75%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-1.876e-01	1.0000	828.0	4.14%	803.9	4.33%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.871e-01	1.0000	26.0	0.13%	30.6	0.17%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.867e-01	1.0000	772.0	3.86%	750.0	4.04%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.830e-01	1.0000	104.0	0.52%	109.0	0.59%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.793e-01	1.0000	1706.0	8.53%	1634.0	8.81%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.788e-01	1.0000	431.0	2.15%	426.2	2.30%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-1.788e-01	1.0000	566.0	2.83%	555.5	3.00%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-1.778e-01	1.0000	1348.0	6.74%	1296.3	6.99%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.772e-01	1.0000	1189.0	5.95%	1146.5	6.18%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-1.771e-01	1.0000	1006.0	5.03%	973.9	5.25%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-1.771e-01	1.0000	308.0	1.54%	308.7	1.66%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-1.766e-01	1.0000	717.0	3.58%	699.7	3.77%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-1.749e-01	1.0000	701.0	3.50%	684.9	3.69%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.739e-01	1.0000	1412.0	7.06%	1357.2	7.32%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.667e-01	1.0000	2956.0	14.78%	2810.0	15.15%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.633e-01	1.0000	103.0	0.52%	109.4	0.59%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-1.614e-01	1.0000	373.0	1.86%	372.6	2.01%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-1.589e-01	1.0000	3255.0	16.28%	3091.5	16.67%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.551e-01	1.0000	149.0	0.74%	155.5	0.84%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-1.542e-01	1.0000	957.0	4.78%	930.9	5.02%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-1.521e-01	1.0000	210.0	1.05%	215.3	1.16%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.511e-01	1.0000	477.0	2.38%	473.5	2.55%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-1.508e-01	1.0000	767.0	3.84%	750.5	4.05%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-1.428e-01	1.0000	501.0	2.50%	497.9	2.68%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.421e-01	1.0000	976.0	4.88%	950.5	5.13%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-1.421e-01	1.0000	138.0	0.69%	145.2	0.78%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-1.386e-01	1.0000	1386.0	6.93%	1339.3	7.22%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.385e-01	1.0000	1638.0	8.19%	1577.5	8.51%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-1.351e-01	1.0000	1669.0	8.34%	1607.9	8.67%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.342e-01	1.0000	1216.0	6.08%	1179.2	6.36%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.324e-01	1.0000	826.0	4.13%	809.0	4.36%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-1.313e-01	1.0000	2914.0	14.57%	2779.4	14.99%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-1.263e-01	1.0000	673.0	3.36%	664.3	3.58%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.249e-01	1.0000	853.0	4.26%	836.5	4.51%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-1.244e-01	1.0000	1138.0	5.69%	1107.6	5.97%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.243e-01	1.0000	1020.0	5.10%	995.3	5.37%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-1.239e-01	1.0000	1535.0	7.67%	1483.1	8.00%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.203e-01	1.0000	1174.0	5.87%	1142.9	6.16%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.182e-01	1.0000	1412.0	7.06%	1368.1	7.38%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.169e-01	1.0000	337.0	1.69%	342.2	1.85%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.163e-01	1.0000	640.0	3.20%	634.9	3.42%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-1.150e-01	1.0000	120.0	0.60%	129.7	0.70%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.150e-01	1.0000	1556.0	7.78%	1505.8	8.12%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.102e-01	1.0000	189.0	0.95%	198.5	1.07%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.089e-01	1.0000	670.0	3.35%	664.9	3.59%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-1.068e-01	1.0000	267.0	1.33%	275.7	1.49%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.051e-01	1.0000	70.0	0.35%	79.4	0.43%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-1.025e-01	1.0000	1312.0	6.56%	1277.9	6.89%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.007e-01	1.0000	706.0	3.53%	700.3	3.78%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-1.006e-01	1.0000	658.0	3.29%	654.1	3.53%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-9.935e-02	1.0000	97.0	0.48%	107.2	0.58%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-9.842e-02	1.0000	267.0	1.33%	276.0	1.49%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-9.549e-02	1.0000	1127.0	5.63%	1103.1	5.95%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.139e-02	1.0000	1601.0	8.00%	1554.0	8.38%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-8.991e-02	1.0000	112.0	0.56%	123.2	0.66%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-8.711e-02	1.0000	2210.0	11.05%	2131.7	11.49%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-8.575e-02	1.0000	1053.0	5.27%	1035.3	5.58%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.272e-02	1.0000	324.0	1.62%	334.2	1.80%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-8.203e-02	1.0000	778.0	3.89%	773.4	4.17%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-8.202e-02	1.0000	987.0	4.93%	973.5	5.25%
SeqBias: TA-repeat	TATATATATA	1e0	-8.162e-02	1.0000	4236.0	21.18%	4037.8	21.77%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-7.850e-02	1.0000	52.0	0.26%	62.7	0.34%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-7.603e-02	1.0000	483.0	2.42%	490.3	2.64%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-7.588e-02	1.0000	36.0	0.18%	45.8	0.25%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.458e-02	1.0000	287.0	1.44%	299.4	1.61%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-7.412e-02	1.0000	528.0	2.64%	534.1	2.88%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-7.376e-02	1.0000	213.0	1.06%	226.8	1.22%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-7.327e-02	1.0000	138.0	0.69%	151.0	0.81%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-7.173e-02	1.0000	2721.0	13.61%	2620.0	14.13%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-6.933e-02	1.0000	1530.0	7.65%	1494.1	8.06%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-6.905e-02	1.0000	1115.0	5.58%	1099.8	5.93%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-6.848e-02	1.0000	19963.0	99.81%	18522.3	99.87%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-6.746e-02	1.0000	73.0	0.36%	85.8	0.46%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-6.649e-02	1.0000	155.0	0.78%	169.8	0.92%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-6.480e-02	1.0000	135.0	0.68%	149.5	0.81%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-6.443e-02	1.0000	266.0	1.33%	280.8	1.51%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-6.169e-02	1.0000	1509.0	7.54%	1477.8	7.97%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-6.101e-02	1.0000	81.0	0.40%	94.3	0.51%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-6.095e-02	1.0000	315.0	1.57%	329.6	1.78%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-6.071e-02	1.0000	185.0	0.92%	200.7	1.08%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.006e-02	1.0000	3063.0	15.32%	2947.3	15.89%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-5.799e-02	1.0000	1896.0	9.48%	1846.5	9.96%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-5.727e-02	1.0000	596.0	2.98%	604.2	3.26%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-5.726e-02	1.0000	658.0	3.29%	664.5	3.58%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-5.578e-02	1.0000	320.0	1.60%	335.1	1.81%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.498e-02	1.0000	792.0	3.96%	794.2	4.28%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-5.489e-02	1.0000	197.0	0.98%	213.9	1.15%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-5.455e-02	1.0000	1928.0	9.64%	1879.0	10.13%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-5.245e-02	1.0000	150.0	0.75%	166.6	0.90%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.752e-02	1.0000	810.0	4.05%	815.0	4.39%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-4.684e-02	1.0000	87.0	0.43%	102.6	0.55%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-4.634e-02	1.0000	148.0	0.74%	165.1	0.89%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.607e-02	1.0000	11.0	0.06%	18.5	0.10%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-4.468e-02	1.0000	557.0	2.79%	570.9	3.08%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-4.456e-02	1.0000	477.0	2.38%	492.6	2.66%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-4.444e-02	1.0000	284.0	1.42%	302.2	1.63%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-4.354e-02	1.0000	3.0	0.01%	7.2	0.04%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-4.321e-02	1.0000	576.0	2.88%	589.9	3.18%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-4.285e-02	1.0000	2151.0	10.76%	2096.2	11.30%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-3.840e-02	1.0000	82.0	0.41%	98.2	0.53%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-3.765e-02	1.0000	982.0	4.91%	984.5	5.31%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-3.512e-02	1.0000	538.0	2.69%	555.5	3.00%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-3.431e-02	1.0000	507.0	2.54%	525.0	2.83%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.334e-02	1.0000	5427.0	27.13%	5187.6	27.97%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.329e-02	1.0000	2790.0	13.95%	2708.3	14.60%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.270e-02	1.0000	123.0	0.61%	142.7	0.77%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-3.232e-02	1.0000	67.0	0.34%	83.3	0.45%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-3.204e-02	1.0000	11.0	0.06%	19.5	0.11%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-3.188e-02	1.0000	8.0	0.04%	15.5	0.08%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-3.186e-02	1.0000	810.0	4.05%	821.8	4.43%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.125e-02	1.0000	184.0	0.92%	205.6	1.11%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-3.027e-02	1.0000	135.0	0.68%	155.1	0.84%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-2.867e-02	1.0000	5215.0	26.07%	4994.6	26.93%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.803e-02	1.0000	2.0	0.01%	6.8	0.04%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-2.743e-02	1.0000	827.0	4.13%	840.3	4.53%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-2.706e-02	1.0000	1738.0	8.69%	1715.3	9.25%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-2.648e-02	1.0000	1480.0	7.40%	1469.2	7.92%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.647e-02	1.0000	1081.0	5.41%	1086.4	5.86%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-2.641e-02	1.0000	1363.0	6.82%	1357.9	7.32%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-2.611e-02	1.0000	209.0	1.04%	232.2	1.25%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.515e-02	1.0000	1575.0	7.88%	1561.3	8.42%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-2.487e-02	1.0000	3.0	0.01%	8.8	0.05%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-2.425e-02	1.0000	488.0	2.44%	511.1	2.76%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.315e-02	1.0000	459.0	2.30%	483.6	2.61%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-2.282e-02	1.0000	34.0	0.17%	48.4	0.26%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-2.267e-02	1.0000	724.0	3.62%	743.3	4.01%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-2.241e-02	1.0000	192.0	0.96%	216.3	1.17%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-2.233e-02	1.0000	1248.0	6.24%	1250.5	6.74%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-2.122e-02	1.0000	591.0	2.96%	614.6	3.31%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-2.097e-02	1.0000	350.0	1.75%	376.6	2.03%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.081e-02	1.0000	4.0	0.02%	10.6	0.06%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.945e-02	1.0000	111.0	0.56%	133.5	0.72%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.912e-02	1.0000	330.0	1.65%	357.4	1.93%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-1.718e-02	1.0000	414.0	2.07%	442.8	2.39%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.711e-02	1.0000	3252.0	16.26%	3164.4	17.06%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.691e-02	1.0000	84.0	0.42%	105.7	0.57%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-1.678e-02	1.0000	1061.0	5.30%	1075.7	5.80%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.658e-02	1.0000	470.0	2.35%	498.2	2.69%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.609e-02	1.0000	2718.0	13.59%	2660.6	14.35%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-1.543e-02	1.0000	1278.0	6.39%	1287.0	6.94%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.481e-02	1.0000	87.0	0.43%	109.7	0.59%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.426e-02	1.0000	2799.0	13.99%	2740.7	14.78%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.373e-02	1.0000	584.0	2.92%	613.9	3.31%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-1.259e-02	1.0000	173.0	0.86%	201.0	1.08%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.137e-02	1.0000	93.0	0.46%	117.2	0.63%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.110e-02	1.0000	2887.0	14.44%	2830.9	15.26%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-1.070e-02	1.0000	69.0	0.34%	91.9	0.50%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.054e-02	1.0000	1755.0	8.77%	1752.7	9.45%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-1.022e-02	1.0000	4249.0	21.25%	4120.3	22.22%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-1.012e-02	1.0000	5971.0	29.85%	5738.0	30.94%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-9.566e-03	1.0000	701.0	3.50%	733.9	3.96%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-7.926e-03	1.0000	930.0	4.65%	960.1	5.18%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-7.189e-03	1.0000	907.0	4.54%	939.3	5.06%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.978e-03	1.0000	449.0	2.25%	487.4	2.63%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-5.778e-03	1.0000	1650.0	8.25%	1663.6	8.97%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-5.464e-03	1.0000	192.0	0.96%	227.2	1.22%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-5.347e-03	1.0000	1796.0	8.98%	1805.0	9.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-4.966e-03	1.0000	1315.0	6.58%	1342.3	7.24%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-4.533e-03	1.0000	683.0	3.42%	725.4	3.91%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-4.501e-03	1.0000	692.0	3.46%	734.7	3.96%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-4.455e-03	1.0000	9757.0	48.79%	9295.0	50.12%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-4.290e-03	1.0000	1189.0	5.95%	1222.4	6.59%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-4.268e-03	1.0000	1154.0	5.77%	1188.7	6.41%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-4.242e-03	1.0000	1913.0	9.56%	1922.2	10.36%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-4.217e-03	1.0000	59.0	0.29%	84.1	0.45%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-3.960e-03	1.0000	640.0	3.20%	684.1	3.69%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-3.869e-03	1.0000	70.0	0.35%	97.4	0.53%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-3.716e-03	1.0000	123.0	0.61%	156.9	0.85%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.597e-03	1.0000	2954.0	14.77%	2921.8	15.75%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-3.432e-03	1.0000	412.0	2.06%	457.4	2.47%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.148e-03	1.0000	2308.0	11.54%	2307.1	12.44%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-3.090e-03	1.0000	1066.0	5.33%	1107.2	5.97%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.881e-03	1.0000	1276.0	6.38%	1313.6	7.08%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-2.867e-03	1.0000	200.0	1.00%	240.2	1.30%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.848e-03	1.0000	2061.0	10.30%	2072.7	11.18%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-2.753e-03	1.0000	488.0	2.44%	537.0	2.90%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-2.646e-03	1.0000	208.0	1.04%	249.4	1.34%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.438e-03	1.0000	1300.0	6.50%	1339.4	7.22%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.337e-03	1.0000	138.0	0.69%	175.6	0.95%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-2.131e-03	1.0000	282.0	1.41%	328.5	1.77%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.531e-03	1.0000	168.0	0.84%	210.6	1.14%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-1.256e-03	1.0000	6605.0	33.02%	6394.9	34.48%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-1.197e-03	1.0000	217.0	1.08%	264.4	1.43%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.052e-03	1.0000	377.0	1.88%	432.7	2.33%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-9.390e-04	1.0000	1600.0	8.00%	1646.4	8.88%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-9.330e-04	1.0000	594.0	2.97%	654.9	3.53%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-6.610e-04	1.0000	412.0	2.06%	473.0	2.55%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-6.180e-04	1.0000	579.0	2.90%	643.3	3.47%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-6.150e-04	1.0000	995.0	4.98%	1059.9	5.71%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-5.050e-04	1.0000	1737.0	8.69%	1789.3	9.65%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-5.030e-04	1.0000	435.0	2.17%	498.3	2.69%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.950e-04	1.0000	1985.0	9.93%	2030.5	10.95%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-4.690e-04	1.0000	1256.0	6.28%	1320.7	7.12%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.510e-04	1.0000	3082.0	15.41%	3092.5	16.67%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-3.270e-04	1.0000	749.0	3.74%	822.0	4.43%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-3.060e-04	1.0000	868.0	4.34%	941.5	5.08%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.840e-04	1.0000	554.0	2.77%	625.2	3.37%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.590e-04	1.0000	2403.0	12.02%	2445.6	13.19%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-2.500e-04	1.0000	1118.0	5.59%	1192.2	6.43%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.930e-04	1.0000	700.0	3.50%	777.9	4.19%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-1.840e-04	1.0000	1572.0	7.86%	1643.8	8.86%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.820e-04	1.0000	2344.0	11.72%	2394.3	12.91%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.490e-04	1.0000	936.0	4.68%	1017.4	5.49%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.340e-04	1.0000	1429.0	7.14%	1507.5	8.13%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.150e-04	1.0000	220.0	1.10%	282.4	1.52%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-9.200e-05	1.0000	438.0	2.19%	515.1	2.78%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-7.300e-05	1.0000	123.0	0.61%	176.0	0.95%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.800e-05	1.0000	3863.0	19.31%	3870.5	20.87%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-6.700e-05	1.0000	172.0	0.86%	232.8	1.26%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-6.100e-05	1.0000	1014.0	5.07%	1105.8	5.96%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-5.500e-05	1.0000	148.0	0.74%	206.4	1.11%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-3.900e-05	1.0000	1048.0	5.24%	1144.3	6.17%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.700e-05	1.0000	280.0	1.40%	355.0	1.91%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-3.300e-05	1.0000	1954.0	9.77%	2041.6	11.01%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-3.100e-05	1.0000	2577.0	12.88%	2648.9	14.28%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-3.000e-05	1.0000	2354.0	11.77%	2433.0	13.12%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-2.300e-05	1.0000	4988.0	24.94%	4963.0	26.76%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.400e-05	1.0000	1901.0	9.50%	2001.1	10.79%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.100e-05	1.0000	1356.0	6.78%	1466.6	7.91%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-7.000e-06	1.0000	284.0	1.42%	368.3	1.99%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.000e-06	1.0000	351.0	1.75%	441.8	2.38%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-5.000e-06	1.0000	2684.0	13.42%	2778.8	14.98%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-5.000e-06	1.0000	79.0	0.40%	134.3	0.72%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-4.000e-06	1.0000	1955.0	9.78%	2071.9	11.17%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-3.000e-06	1.0000	150.0	0.75%	223.0	1.20%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.000e-06	1.0000	271.0	1.35%	360.3	1.94%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-2.000e-06	1.0000	776.0	3.88%	896.4	4.83%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-2.000e-06	1.0000	1651.0	8.25%	1778.3	9.59%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-2.000e-06	1.0000	1262.0	6.31%	1391.3	7.50%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-1.000e-06	1.0000	2011.0	10.05%	2140.3	11.54%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-1.000e-06	1.0000	2320.0	11.60%	2445.5	13.19%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-1.000e-06	1.0000	2953.0	14.77%	3063.4	16.52%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.000e-06	1.0000	1308.0	6.54%	1446.3	7.80%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-1.000e-06	1.0000	1377.0	6.88%	1518.5	8.19%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.000e-06	1.0000	1506.0	7.53%	1649.0	8.89%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-0.000e+00	1.0000	1449.0	7.25%	1593.6	8.59%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-0.000e+00	1.0000	1215.0	6.08%	1367.6	7.37%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	3845.0	19.23%	3954.1	21.32%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-0.000e+00	1.0000	2040.0	10.20%	2194.4	11.83%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-0.000e+00	1.0000	1513.0	7.56%	1672.3	9.02%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	1903.0	9.52%	2072.5	11.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	2684.0	13.42%	2846.4	15.35%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-0.000e+00	1.0000	8391.0	41.95%	8289.5	44.69%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-0.000e+00	1.0000	1678.0	8.39%	1861.6	10.04%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	4518.0	22.59%	4645.1	25.05%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-0.000e+00	1.0000	1881.0	9.40%	2070.0	11.16%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2469.0	12.35%	2663.9	14.36%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1852.0	9.26%	2074.1	11.18%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	1720.0	8.60%	2051.7	11.06%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-0.000e+00	1.0000	301.0	1.50%	443.0	2.39%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	1558.0	7.79%	2175.5	11.73%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-0.000e+00	1.0000	3878.0	19.39%	4227.2	22.79%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1440.0	7.20%	1915.2	10.33%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	451.0	2.25%	711.3	3.84%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	3083.0	15.42%	3493.7	18.84%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	4136.0	20.68%	4416.1	23.81%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-0.000e+00	1.0000	11.0	0.06%	235.1	1.27%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	18546.9	100.00%