Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 19960)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 19932)	% of Background Sequences with Motif
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-23	-5.313e+01	0.0000	499.0	2.50%	233.2	1.17%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-16	-3.765e+01	0.0000	956.0	4.78%	631.6	3.16%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-16	-3.746e+01	0.0000	2716.0	13.58%	2171.1	10.86%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-15	-3.652e+01	0.0000	932.0	4.66%	616.0	3.08%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-14	-3.375e+01	0.0000	1512.0	7.56%	1122.4	5.61%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-13	-3.222e+01	0.0000	2640.0	13.20%	2142.6	10.72%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-13	-3.135e+01	0.0000	3884.0	19.42%	3303.1	16.52%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-13	-3.110e+01	0.0000	2761.0	13.80%	2262.4	11.32%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-13	-3.041e+01	0.0000	3094.0	15.47%	2575.8	12.88%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-13	-3.012e+01	0.0000	4922.0	24.61%	4298.9	21.50%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-12	-2.965e+01	0.0000	4399.0	22.00%	3806.5	19.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-12	-2.931e+01	0.0000	1587.0	7.94%	1215.1	6.08%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-11	-2.690e+01	0.0000	1282.0	6.41%	962.2	4.81%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-11	-2.676e+01	0.0000	2019.0	10.10%	1620.8	8.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-11	-2.655e+01	0.0000	1890.0	9.45%	1505.1	7.53%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-11	-2.561e+01	0.0000	5468.0	27.34%	4874.7	24.38%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-11	-2.538e+01	0.0000	3539.0	17.70%	3039.7	15.20%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-10	-2.508e+01	0.0000	1377.0	6.88%	1057.8	5.29%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-10	-2.441e+01	0.0000	1443.0	7.22%	1120.8	5.61%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-10	-2.323e+01	0.0000	2646.0	13.23%	2226.8	11.14%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-9	-2.297e+01	0.0000	1076.0	5.38%	806.5	4.03%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-9	-2.280e+01	0.0000	869.0	4.35%	628.5	3.14%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-8	-2.035e+01	0.0000	4807.0	24.04%	4306.7	21.54%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-8	-1.992e+01	0.0000	4079.0	20.39%	3614.5	18.08%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-8	-1.986e+01	0.0000	730.0	3.65%	525.0	2.63%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-8	-1.966e+01	0.0000	2739.0	13.69%	2349.4	11.75%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-8	-1.922e+01	0.0000	3734.0	18.67%	3294.1	16.48%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-8	-1.904e+01	0.0000	1534.0	7.67%	1242.7	6.22%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-8	-1.900e+01	0.0000	1244.0	6.22%	981.2	4.91%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-8	-1.866e+01	0.0000	3929.0	19.65%	3487.5	17.44%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-7	-1.829e+01	0.0000	376.0	1.88%	238.1	1.19%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-7	-1.780e+01	0.0000	1294.0	6.47%	1035.1	5.18%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-7	-1.756e+01	0.0000	3721.0	18.61%	3303.2	16.52%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-7	-1.754e+01	0.0000	6099.0	30.50%	5599.5	28.01%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-7	-1.728e+01	0.0000	1336.0	6.68%	1077.5	5.39%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-7	-1.712e+01	0.0000	3898.0	19.49%	3478.8	17.40%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-7	-1.679e+01	0.0000	2262.0	11.31%	1934.7	9.68%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-7	-1.676e+01	0.0000	350.0	1.75%	223.4	1.12%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-7	-1.648e+01	0.0000	3966.0	19.83%	3552.5	17.77%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-7	-1.636e+01	0.0000	640.0	3.20%	467.6	2.34%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-7	-1.628e+01	0.0000	1765.0	8.82%	1478.8	7.40%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-7	-1.621e+01	0.0000	1178.0	5.89%	943.9	4.72%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-6	-1.586e+01	0.0000	1941.0	9.71%	1645.6	8.23%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.535e+01	0.0000	5399.0	27.00%	4953.4	24.78%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-6	-1.424e+01	0.0000	825.0	4.12%	642.8	3.22%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-6	-1.403e+01	0.0000	4380.0	21.90%	3987.1	19.94%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e-5	-1.355e+01	0.0000	1940.0	9.70%	1669.8	8.35%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-5	-1.346e+01	0.0000	4969.0	24.84%	4567.0	22.84%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-5	-1.309e+01	0.0000	3301.0	16.50%	2964.5	14.83%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e-5	-1.297e+01	0.0000	2030.0	10.15%	1760.9	8.81%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.275e+01	0.0001	2962.0	14.81%	2645.4	13.23%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-5	-1.269e+01	0.0001	1696.0	8.48%	1451.3	7.26%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-5	-1.259e+01	0.0001	1816.0	9.08%	1564.8	7.83%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e-5	-1.256e+01	0.0001	616.0	3.08%	469.3	2.35%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.229e+01	0.0001	2462.0	12.31%	2176.8	10.89%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-5	-1.224e+01	0.0001	2716.0	13.58%	2418.7	12.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-5	-1.215e+01	0.0001	2481.0	12.40%	2196.9	10.99%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-5	-1.208e+01	0.0001	4061.0	20.30%	3711.1	18.56%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-5	-1.199e+01	0.0001	1330.0	6.65%	1119.7	5.60%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-5	-1.192e+01	0.0001	960.0	4.80%	782.0	3.91%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-4	-1.137e+01	0.0002	2299.0	11.49%	2034.1	10.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-4	-1.110e+01	0.0002	2619.0	13.10%	2342.7	11.72%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e-4	-1.105e+01	0.0002	727.0	3.64%	578.5	2.89%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-4	-1.100e+01	0.0002	4052.0	20.26%	3721.3	18.61%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e-4	-1.097e+01	0.0002	235.0	1.18%	153.5	0.77%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-4	-1.021e+01	0.0005	1664.0	8.32%	1450.9	7.26%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-4	-1.018e+01	0.0005	531.0	2.66%	410.4	2.05%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-4	-1.001e+01	0.0006	594.0	2.97%	467.6	2.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-4	-9.719e+00	0.0008	2482.0	12.41%	2232.0	11.16%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-4	-9.366e+00	0.0011	2854.0	14.27%	2594.3	12.98%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e-3	-8.970e+00	0.0017	324.0	1.62%	237.8	1.19%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-3	-8.966e+00	0.0017	1809.0	9.04%	1604.0	8.02%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e-3	-8.737e+00	0.0020	298.0	1.49%	216.7	1.08%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-3	-8.546e+00	0.0024	1164.0	5.82%	1002.2	5.01%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-3	-8.396e+00	0.0028	835.0	4.17%	699.2	3.50%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-8.294e+00	0.0030	2386.0	11.93%	2163.5	10.82%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e-3	-8.189e+00	0.0033	516.0	2.58%	411.3	2.06%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-3	-8.176e+00	0.0033	461.0	2.31%	362.9	1.82%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e-3	-8.077e+00	0.0036	2985.0	14.92%	2743.5	13.72%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e-3	-7.842e+00	0.0045	3305.0	16.53%	3057.8	15.30%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e-3	-7.842e+00	0.0045	242.0	1.21%	173.6	0.87%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-3	-7.814e+00	0.0045	1513.0	7.56%	1339.6	6.70%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.782e+00	0.0046	1212.0	6.06%	1056.2	5.28%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-7.763e+00	0.0047	613.0	3.06%	502.1	2.51%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e-3	-7.640e+00	0.0052	3718.0	18.59%	3462.9	17.32%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.575e+00	0.0055	852.0	4.26%	723.0	3.62%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e-3	-7.379e+00	0.0066	2703.0	13.51%	2484.2	12.43%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-7.354e+00	0.0067	7221.0	36.10%	6909.6	34.56%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-3	-7.326e+00	0.0068	1293.0	6.46%	1138.6	5.70%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-7.182e+00	0.0078	2639.0	13.20%	2426.2	12.14%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e-3	-6.910e+00	0.0101	418.0	2.09%	333.5	1.67%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-6.833e+00	0.0108	2810.0	14.05%	2598.2	13.00%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-6.791e+00	0.0111	1873.0	9.37%	1697.6	8.49%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e-2	-6.758e+00	0.0114	2674.0	13.37%	2468.2	12.35%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e-2	-6.434e+00	0.0156	533.0	2.67%	442.0	2.21%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e-2	-6.273e+00	0.0181	875.0	4.38%	759.9	3.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-6.244e+00	0.0185	2164.0	10.82%	1986.2	9.93%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-6.216e+00	0.0188	266.0	1.33%	203.4	1.02%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-2	-6.188e+00	0.0191	2332.0	11.66%	2149.4	10.75%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e-2	-6.162e+00	0.0194	4948.0	24.74%	4700.6	23.51%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-2	-6.156e+00	0.0194	2437.0	12.19%	2251.0	11.26%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-6.068e+00	0.0209	1307.0	6.54%	1169.8	5.85%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-5.981e+00	0.0226	837.0	4.18%	727.1	3.64%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e-2	-5.964e+00	0.0228	223.0	1.11%	167.6	0.84%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-2	-5.929e+00	0.0234	1412.0	7.06%	1271.2	6.36%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e-2	-5.902e+00	0.0238	3002.0	15.01%	2805.0	14.03%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-5.889e+00	0.0239	584.0	2.92%	493.6	2.47%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e-2	-5.877e+00	0.0239	2308.0	11.54%	2132.4	10.67%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-2	-5.740e+00	0.0272	2072.0	10.36%	1907.6	9.54%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-2	-5.736e+00	0.0272	1887.0	9.44%	1729.8	8.65%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-2	-5.630e+00	0.0298	468.0	2.34%	389.8	1.95%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e-2	-5.614e+00	0.0300	1595.0	7.98%	1451.3	7.26%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e-2	-5.587e+00	0.0306	99.0	0.50%	65.0	0.33%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e-2	-5.557e+00	0.0312	959.0	4.79%	847.8	4.24%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e-2	-5.551e+00	0.0312	408.0	2.04%	335.6	1.68%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e-2	-5.527e+00	0.0316	2988.0	14.94%	2799.9	14.01%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e-2	-5.506e+00	0.0320	2753.0	13.76%	2571.1	12.86%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e-2	-5.422e+00	0.0345	325.0	1.62%	261.4	1.31%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-2	-5.356e+00	0.0366	692.0	3.46%	599.1	3.00%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-2	-5.317e+00	0.0377	176.0	0.88%	130.9	0.65%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e-2	-5.243e+00	0.0403	75.0	0.38%	46.6	0.23%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-2	-5.227e+00	0.0406	158.0	0.79%	115.8	0.58%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e-2	-5.211e+00	0.0409	832.0	4.16%	732.3	3.66%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e-2	-5.188e+00	0.0415	961.0	4.81%	854.7	4.28%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e-2	-5.089e+00	0.0455	3383.0	16.91%	3195.4	15.98%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e-2	-5.011e+00	0.0488	145.0	0.73%	105.7	0.53%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e-2	-5.004e+00	0.0488	1132.0	5.66%	1019.7	5.10%
SeqBias: CA-repeat	CACACACACA	1e-2	-4.965e+00	0.0503	7874.0	39.37%	7630.0	38.17%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-2	-4.952e+00	0.0505	1593.0	7.96%	1462.0	7.31%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.928e+00	0.0513	1014.0	5.07%	908.5	4.54%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-2	-4.875e+00	0.0537	18592.0	92.96%	18456.8	92.32%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e-2	-4.872e+00	0.0537	1031.0	5.16%	925.1	4.63%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-2	-4.688e+00	0.0638	728.0	3.64%	641.1	3.21%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-2	-4.613e+00	0.0683	2148.0	10.74%	2004.6	10.03%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e-1	-4.601e+00	0.0686	23.0	0.11%	9.0	0.05%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-1	-4.593e+00	0.0687	3122.0	15.61%	2953.6	14.77%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-4.570e+00	0.0697	575.0	2.88%	499.9	2.50%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-4.550e+00	0.0706	172.0	0.86%	131.7	0.66%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-4.484e+00	0.0749	545.0	2.73%	472.8	2.36%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-4.461e+00	0.0761	1579.0	7.90%	1457.1	7.29%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-1	-4.428e+00	0.0781	1383.0	6.92%	1269.8	6.35%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e-1	-4.423e+00	0.0781	98.0	0.49%	68.5	0.34%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-1	-4.371e+00	0.0815	825.0	4.12%	737.4	3.69%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-4.352e+00	0.0825	1790.0	8.95%	1663.4	8.32%
SeqBias: C/A-bias	MMMMMMMMMM	1e-1	-4.343e+00	0.0826	19966.0	99.83%	19935.2	99.72%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-4.335e+00	0.0828	588.0	2.94%	514.8	2.57%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-4.296e+00	0.0855	330.0	1.65%	275.2	1.38%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e-1	-4.293e+00	0.0855	72.0	0.36%	47.8	0.24%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-1	-4.282e+00	0.0855	1201.0	6.00%	1097.0	5.49%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e-1	-4.272e+00	0.0858	1462.0	7.31%	1348.4	6.74%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.242e+00	0.0878	163.0	0.81%	125.4	0.63%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-4.217e+00	0.0894	22.0	0.11%	9.1	0.05%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-1	-4.204e+00	0.0900	1585.0	7.92%	1468.3	7.34%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e-1	-4.201e+00	0.0900	210.0	1.05%	167.2	0.84%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e-1	-4.194e+00	0.0900	126.0	0.63%	93.0	0.47%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-4.172e+00	0.0912	285.0	1.43%	235.6	1.18%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e-1	-4.161e+00	0.0916	424.0	2.12%	363.0	1.82%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e-1	-4.143e+00	0.0926	936.0	4.68%	846.5	4.23%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e-1	-4.095e+00	0.0966	270.0	1.35%	222.8	1.11%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-1	-4.019e+00	0.1036	1704.0	8.52%	1587.4	7.94%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e-1	-3.987e+00	0.1063	760.0	3.80%	681.3	3.41%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e-1	-3.906e+00	0.1145	35.0	0.18%	19.9	0.10%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e-1	-3.889e+00	0.1157	691.0	3.45%	617.7	3.09%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e-1	-3.719e+00	0.1363	140.0	0.70%	108.6	0.54%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e-1	-3.672e+00	0.1420	3577.0	17.89%	3426.9	17.14%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.624e+00	0.1482	1103.0	5.51%	1015.3	5.08%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.591e+00	0.1523	1315.0	6.58%	1220.4	6.10%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.563e+00	0.1556	198.0	0.99%	161.1	0.81%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e-1	-3.560e+00	0.1556	688.0	3.44%	619.4	3.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-3.553e+00	0.1556	841.0	4.21%	765.1	3.83%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.537e+00	0.1569	456.0	2.28%	400.3	2.00%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e-1	-3.521e+00	0.1584	1129.0	5.64%	1043.0	5.22%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e-1	-3.520e+00	0.1584	161.0	0.80%	128.4	0.64%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-3.443e+00	0.1694	1860.0	9.30%	1752.6	8.77%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e-1	-3.437e+00	0.1695	530.0	2.65%	471.4	2.36%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e-1	-3.433e+00	0.1695	2453.0	12.26%	2331.4	11.66%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-3.384e+00	0.1766	275.0	1.38%	233.0	1.17%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-1	-3.361e+00	0.1797	1134.0	5.67%	1050.6	5.25%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e-1	-3.345e+00	0.1816	1201.0	6.00%	1115.8	5.58%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-1	-3.340e+00	0.1816	6056.0	30.28%	5887.1	29.45%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e-1	-3.340e+00	0.1816	2938.0	14.69%	2809.1	14.05%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-1	-3.324e+00	0.1824	913.0	4.57%	838.4	4.19%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e-1	-3.304e+00	0.1850	508.0	2.54%	452.6	2.26%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e-1	-3.295e+00	0.1857	2597.0	12.98%	2476.6	12.39%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.289e+00	0.1859	1298.0	6.49%	1210.6	6.06%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e-1	-3.213e+00	0.1994	720.0	3.60%	655.2	3.28%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e-1	-3.193e+00	0.2024	135.0	0.68%	107.5	0.54%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.173e+00	0.2054	4060.0	20.30%	3919.8	19.61%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e-1	-3.161e+00	0.2067	78.0	0.39%	57.2	0.29%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e-1	-3.127e+00	0.2127	1129.0	5.64%	1050.6	5.26%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.121e+00	0.2130	171.0	0.85%	140.2	0.70%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-3.109e+00	0.2144	995.0	4.98%	922.0	4.61%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e-1	-3.104e+00	0.2144	141.0	0.70%	113.6	0.57%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-1	-3.092e+00	0.2158	2216.0	11.08%	2109.6	10.55%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.070e+00	0.2194	638.0	3.19%	580.0	2.90%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-1	-3.050e+00	0.2228	1412.0	7.06%	1326.4	6.63%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-3.047e+00	0.2228	1182.0	5.91%	1103.6	5.52%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e-1	-3.041e+00	0.2228	214.0	1.07%	180.8	0.90%
SeqBias: GA-repeat	GAGAGAGAGA	1e-1	-3.026e+00	0.2248	11687.0	58.44%	11517.7	57.61%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.006e+00	0.2282	2873.0	14.37%	2756.9	13.79%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e-1	-2.972e+00	0.2349	162.0	0.81%	133.4	0.67%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e-1	-2.934e+00	0.2429	1881.0	9.40%	1786.9	8.94%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e-1	-2.925e+00	0.2438	285.0	1.43%	247.8	1.24%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-2.923e+00	0.2438	1048.0	5.24%	976.1	4.88%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e-1	-2.848e+00	0.2608	162.0	0.81%	134.1	0.67%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-1	-2.723e+00	0.2941	2026.0	10.13%	1934.3	9.68%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-1	-2.681e+00	0.3050	1581.0	7.90%	1500.7	7.51%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e-1	-2.638e+00	0.3170	751.0	3.75%	695.9	3.48%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e-1	-2.620e+00	0.3212	229.0	1.15%	198.5	0.99%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-2.599e+00	0.3263	860.0	4.30%	801.1	4.01%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e-1	-2.588e+00	0.3284	867.0	4.33%	808.1	4.04%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e-1	-2.578e+00	0.3302	98.0	0.49%	78.9	0.39%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e-1	-2.540e+00	0.3415	385.0	1.93%	346.6	1.73%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e-1	-2.537e+00	0.3415	1495.0	7.47%	1420.9	7.11%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-1	-2.536e+00	0.3415	122.0	0.61%	100.4	0.50%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e-1	-2.518e+00	0.3440	135.0	0.68%	112.5	0.56%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.514e+00	0.3440	885.0	4.42%	827.5	4.14%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-2.477e+00	0.3551	139.0	0.69%	116.5	0.58%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e-1	-2.474e+00	0.3551	517.0	2.58%	473.7	2.37%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-1	-2.473e+00	0.3551	592.0	2.96%	545.5	2.73%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.469e+00	0.3551	385.0	1.93%	347.7	1.74%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e-1	-2.434e+00	0.3642	439.0	2.20%	399.3	2.00%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-1	-2.424e+00	0.3661	185.0	0.92%	159.7	0.80%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-2.420e+00	0.3661	1172.0	5.86%	1108.9	5.55%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e-1	-2.409e+00	0.3685	7.0	0.03%	2.9	0.01%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e-1	-2.357e+00	0.3864	195.0	0.97%	169.9	0.85%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e-1	-2.332e+00	0.3946	1028.0	5.14%	970.1	4.85%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e0	-2.299e+00	0.4059	569.0	2.84%	526.7	2.63%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-2.288e+00	0.4085	30.0	0.15%	20.6	0.10%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.262e+00	0.4174	2451.0	12.26%	2367.3	11.84%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-2.257e+00	0.4179	323.0	1.62%	291.3	1.46%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e0	-2.238e+00	0.4241	601.0	3.00%	558.4	2.79%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-2.230e+00	0.4254	727.0	3.64%	680.3	3.40%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-2.228e+00	0.4254	2539.0	12.70%	2455.6	12.28%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.224e+00	0.4254	498.0	2.49%	459.5	2.30%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-2.206e+00	0.4305	2012.0	10.06%	1937.8	9.69%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-2.171e+00	0.4436	266.0	1.33%	239.0	1.20%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e0	-2.146e+00	0.4529	720.0	3.60%	675.9	3.38%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-2.133e+00	0.4569	834.0	4.17%	786.3	3.93%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.128e+00	0.4575	12.0	0.06%	6.9	0.03%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-2.124e+00	0.4575	439.0	2.20%	404.1	2.02%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-2.073e+00	0.4794	52.0	0.26%	40.5	0.20%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-2.066e+00	0.4806	1285.0	6.42%	1228.4	6.14%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-2.049e+00	0.4870	136.0	0.68%	117.2	0.59%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-2.031e+00	0.4936	669.0	3.35%	628.2	3.14%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-2.029e+00	0.4936	5481.0	27.41%	5378.4	26.90%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-2.028e+00	0.4936	543.0	2.71%	506.8	2.54%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-2.013e+00	0.4965	9.0	0.04%	5.0	0.02%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-2.006e+00	0.4979	1648.0	8.24%	1586.2	7.93%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-1.999e+00	0.4996	443.0	2.21%	410.9	2.06%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.999e+00	0.4996	340.0	1.70%	311.7	1.56%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-1.991e+00	0.4996	89.0	0.45%	74.7	0.37%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.976e+00	0.5053	1425.0	7.12%	1368.6	6.85%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-1.975e+00	0.5053	9932.0	49.66%	9818.2	49.11%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-1.973e+00	0.5053	1224.0	6.12%	1172.0	5.86%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.964e+00	0.5053	2577.0	12.88%	2503.8	12.52%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-1.953e+00	0.5091	659.0	3.29%	620.3	3.10%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.941e+00	0.5132	6880.0	34.40%	6775.7	33.89%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-1.933e+00	0.5154	171.0	0.85%	151.8	0.76%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.925e+00	0.5171	26.0	0.13%	18.8	0.09%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.906e+00	0.5254	2146.0	10.73%	2080.9	10.41%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-1.903e+00	0.5254	2977.0	14.89%	2901.8	14.51%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.895e+00	0.5269	2251.0	11.25%	2184.5	10.93%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-1.893e+00	0.5269	868.0	4.34%	825.3	4.13%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.893e+00	0.5269	501.0	2.50%	468.1	2.34%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.888e+00	0.5269	1652.0	8.26%	1594.7	7.98%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-1.885e+00	0.5269	1256.0	6.28%	1205.7	6.03%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.876e+00	0.5269	222.0	1.11%	200.4	1.00%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-1.862e+00	0.5326	133.0	0.66%	116.8	0.58%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.858e+00	0.5329	3497.0	17.48%	3418.6	17.10%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.836e+00	0.5422	4502.0	22.51%	4416.7	22.09%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.835e+00	0.5422	3191.0	15.96%	3116.9	15.59%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.833e+00	0.5422	155.0	0.78%	137.2	0.69%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-1.797e+00	0.5576	70.0	0.35%	58.0	0.29%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-1.792e+00	0.5589	1426.0	7.13%	1375.9	6.88%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e0	-1.776e+00	0.5656	1064.0	5.32%	1020.9	5.11%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-1.775e+00	0.5656	277.0	1.39%	254.8	1.27%
SeqBias: TA-repeat	TATATATATA	1e0	-1.769e+00	0.5656	4314.0	21.57%	4233.9	21.18%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.758e+00	0.5699	2853.0	14.27%	2785.6	13.93%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.745e+00	0.5749	2102.0	10.51%	2043.4	10.22%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e0	-1.745e+00	0.5749	466.0	2.33%	437.5	2.19%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-1.737e+00	0.5754	505.0	2.53%	475.6	2.38%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.734e+00	0.5754	1980.0	9.90%	1924.0	9.62%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-1.715e+00	0.5843	719.0	3.60%	684.2	3.42%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-1.699e+00	0.5916	1136.0	5.68%	1093.2	5.47%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.688e+00	0.5960	3568.0	17.84%	3497.5	17.49%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-1.687e+00	0.5960	663.0	3.31%	630.6	3.15%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.680e+00	0.5966	2820.0	14.10%	2756.1	13.79%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.673e+00	0.5987	3183.0	15.92%	3116.2	15.59%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.672e+00	0.5987	98.0	0.49%	85.7	0.43%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e0	-1.661e+00	0.6019	1671.0	8.36%	1621.6	8.11%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.659e+00	0.6019	1039.0	5.20%	999.7	5.00%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.640e+00	0.6102	1730.0	8.65%	1680.2	8.40%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.632e+00	0.6131	1085.0	5.42%	1045.9	5.23%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e0	-1.610e+00	0.6249	1746.0	8.73%	1697.9	8.49%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-1.599e+00	0.6298	543.0	2.71%	515.7	2.58%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.590e+00	0.6332	366.0	1.83%	343.5	1.72%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e0	-1.589e+00	0.6332	1231.0	6.16%	1190.5	5.95%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-1.571e+00	0.6408	97.0	0.48%	86.0	0.43%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-1.560e+00	0.6458	1104.0	5.52%	1066.6	5.34%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.558e+00	0.6458	627.0	3.14%	598.4	2.99%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-1.557e+00	0.6458	824.0	4.12%	792.0	3.96%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.550e+00	0.6458	9.0	0.04%	5.5	0.03%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.550e+00	0.6458	1698.0	8.49%	1652.3	8.26%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-1.549e+00	0.6458	15.0	0.07%	10.5	0.05%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-1.542e+00	0.6458	1273.0	6.37%	1233.9	6.17%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-1.492e+00	0.6757	4511.0	22.55%	4445.7	22.24%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-1.490e+00	0.6757	363.0	1.81%	342.7	1.71%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-1.481e+00	0.6788	10.0	0.05%	6.7	0.03%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e0	-1.477e+00	0.6792	536.0	2.68%	511.3	2.56%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-1.470e+00	0.6814	1392.0	6.96%	1353.1	6.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.462e+00	0.6847	346.0	1.73%	326.4	1.63%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e0	-1.455e+00	0.6878	429.0	2.15%	407.4	2.04%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.447e+00	0.6909	254.0	1.27%	237.0	1.19%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e0	-1.440e+00	0.6933	442.0	2.21%	420.9	2.11%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.439e+00	0.6933	258.0	1.29%	241.3	1.21%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-1.437e+00	0.6933	1046.0	5.23%	1013.2	5.07%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e0	-1.432e+00	0.6933	2514.0	12.57%	2465.4	12.33%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.429e+00	0.6933	175.0	0.88%	161.7	0.81%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e0	-1.427e+00	0.6933	812.0	4.06%	783.4	3.92%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e0	-1.403e+00	0.7062	575.0	2.88%	551.1	2.76%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.390e+00	0.7135	1018.0	5.09%	987.1	4.94%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-1.386e+00	0.7139	2.0	0.01%	0.0	0.00%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e0	-1.385e+00	0.7139	1028.0	5.14%	997.2	4.99%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-1.383e+00	0.7139	58.0	0.29%	50.8	0.25%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-1.381e+00	0.7139	1703.0	8.52%	1664.6	8.33%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-1.379e+00	0.7139	555.0	2.77%	532.7	2.66%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-1.377e+00	0.7139	1200.0	6.00%	1167.9	5.84%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-1.372e+00	0.7139	617.0	3.08%	593.1	2.97%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e0	-1.362e+00	0.7154	526.0	2.63%	504.1	2.52%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-1.359e+00	0.7154	1421.0	7.11%	1387.0	6.94%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-1.355e+00	0.7161	393.0	1.97%	374.1	1.87%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.350e+00	0.7175	491.0	2.46%	470.8	2.35%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-1.345e+00	0.7193	1058.0	5.29%	1028.9	5.15%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-1.344e+00	0.7193	103.0	0.52%	93.1	0.47%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.344e+00	0.7193	4012.0	20.06%	3958.4	19.80%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-1.325e+00	0.7271	693.0	3.46%	669.5	3.35%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.320e+00	0.7286	339.0	1.70%	322.9	1.61%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e0	-1.299e+00	0.7419	453.0	2.27%	434.3	2.17%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-1.292e+00	0.7452	72.0	0.36%	64.9	0.32%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.287e+00	0.7468	119.0	0.60%	109.3	0.55%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-1.285e+00	0.7468	2211.0	11.05%	2172.6	10.87%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-1.283e+00	0.7468	4006.0	20.03%	3956.9	19.79%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.281e+00	0.7468	476.0	2.38%	457.4	2.29%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.279e+00	0.7468	652.0	3.26%	630.5	3.15%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.277e+00	0.7468	15.0	0.07%	11.6	0.06%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-1.275e+00	0.7468	151.0	0.76%	140.7	0.70%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-1.256e+00	0.7544	1164.0	5.82%	1136.3	5.68%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e0	-1.247e+00	0.7590	860.0	4.30%	836.7	4.19%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.238e+00	0.7637	240.0	1.20%	227.1	1.14%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.236e+00	0.7637	84.0	0.42%	76.2	0.38%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.236e+00	0.7637	972.0	4.86%	947.7	4.74%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.231e+00	0.7637	681.0	3.40%	660.2	3.30%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.210e+00	0.7769	1453.0	7.27%	1425.0	7.13%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-1.209e+00	0.7769	1454.0	7.27%	1425.9	7.13%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-1.200e+00	0.7802	421.0	2.10%	405.3	2.03%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e0	-1.195e+00	0.7820	487.0	2.44%	470.5	2.35%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-1.188e+00	0.7849	862.0	4.31%	840.6	4.20%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-1.184e+00	0.7862	1588.0	7.94%	1559.1	7.80%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e0	-1.166e+00	0.7980	537.0	2.69%	520.5	2.60%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-1.165e+00	0.7980	1029.0	5.15%	1006.7	5.04%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.163e+00	0.7980	3.0	0.01%	1.6	0.01%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-1.163e+00	0.7980	3.0	0.01%	2.0	0.01%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-1.162e+00	0.7980	138.0	0.69%	129.2	0.65%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.161e+00	0.7980	1141.0	5.71%	1118.0	5.59%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-1.157e+00	0.7980	56.0	0.28%	50.3	0.25%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-1.152e+00	0.7980	143.0	0.71%	134.0	0.67%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e0	-1.139e+00	0.8023	521.0	2.60%	505.6	2.53%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.136e+00	0.8025	527.0	2.63%	511.6	2.56%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-1.130e+00	0.8053	3647.0	18.23%	3609.9	18.06%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-1.130e+00	0.8053	779.0	3.90%	760.5	3.80%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.125e+00	0.8053	296.0	1.48%	284.4	1.42%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e0	-1.120e+00	0.8062	487.0	2.44%	472.1	2.36%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-1.118e+00	0.8062	162.0	0.81%	153.2	0.77%
SeqBias: polyC-repeat	CCCCCCCCCC	1e0	-1.115e+00	0.8064	19314.0	96.57%	19288.8	96.48%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e0	-1.113e+00	0.8064	576.0	2.88%	560.1	2.80%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e0	-1.112e+00	0.8064	2438.0	12.19%	2407.8	12.04%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.108e+00	0.8064	1677.0	8.38%	1651.3	8.26%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-1.102e+00	0.8079	3383.0	16.91%	3348.5	16.75%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-1.097e+00	0.8100	700.0	3.50%	683.1	3.42%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-1.088e+00	0.8154	344.0	1.72%	332.5	1.66%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.082e+00	0.8178	3009.0	15.04%	2977.6	14.89%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.079e+00	0.8187	3064.0	15.32%	3033.0	15.17%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.076e+00	0.8188	2671.0	13.36%	2641.1	13.21%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-1.075e+00	0.8188	588.0	2.94%	573.6	2.87%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-1.074e+00	0.8188	50.0	0.25%	45.8	0.23%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.073e+00	0.8188	13703.0	68.52%	13658.6	68.32%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-1.072e+00	0.8188	687.0	3.44%	671.5	3.36%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e0	-1.070e+00	0.8188	371.0	1.85%	359.6	1.80%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-1.070e+00	0.8188	443.0	2.21%	430.3	2.15%
Tal1	CATCTG	1e0	-1.065e+00	0.8188	1862.0	9.31%	1837.7	9.19%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e0	-1.065e+00	0.8188	1408.0	7.04%	1386.8	6.94%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.061e+00	0.8188	388.0	1.94%	376.7	1.88%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-1.055e+00	0.8188	3202.0	16.01%	3171.4	15.86%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.054e+00	0.8188	2540.0	12.70%	2512.7	12.57%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.051e+00	0.8188	406.0	2.03%	394.4	1.97%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-1.049e+00	0.8188	4144.0	20.72%	4110.9	20.56%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.003e+00	0.8498	971.0	4.86%	955.9	4.78%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e0	-9.892e-01	0.8593	1905.0	9.53%	1884.9	9.43%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-9.881e-01	0.8593	1206.0	6.03%	1189.5	5.95%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.856e-01	0.8593	234.0	1.17%	226.3	1.13%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-9.793e-01	0.8614	1115.0	5.58%	1099.9	5.50%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-9.753e-01	0.8627	249.0	1.24%	241.9	1.21%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-9.624e-01	0.8718	548.0	2.74%	537.9	2.69%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-9.623e-01	0.8718	928.0	4.64%	914.7	4.58%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-9.583e-01	0.8718	681.0	3.40%	669.8	3.35%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-9.519e-01	0.8744	2180.0	10.90%	2160.0	10.80%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-9.495e-01	0.8744	1011.0	5.05%	998.0	4.99%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.472e-01	0.8744	3433.0	17.16%	3409.7	17.06%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-9.438e-01	0.8751	1408.0	7.04%	1392.2	6.96%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e0	-9.420e-01	0.8751	1239.0	6.19%	1224.2	6.12%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-9.329e-01	0.8804	812.0	4.06%	800.7	4.01%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-9.256e-01	0.8847	574.0	2.87%	564.6	2.82%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-9.239e-01	0.8847	2394.0	11.97%	2375.4	11.88%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-9.207e-01	0.8848	596.0	2.98%	586.5	2.93%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-9.192e-01	0.8848	744.0	3.72%	733.9	3.67%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-9.177e-01	0.8848	123.0	0.61%	119.0	0.60%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-9.137e-01	0.8848	127.0	0.64%	122.4	0.61%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e0	-9.136e-01	0.8848	2602.0	13.01%	2583.6	12.92%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.124e-01	0.8848	5098.0	25.49%	5073.6	25.38%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-9.099e-01	0.8848	203.0	1.01%	197.4	0.99%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e0	-9.013e-01	0.8871	423.0	2.11%	415.8	2.08%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-8.978e-01	0.8882	2318.0	11.59%	2301.2	11.51%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e0	-8.970e-01	0.8882	2335.0	11.68%	2318.3	11.60%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-8.968e-01	0.8882	2042.0	10.21%	2026.5	10.14%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-8.929e-01	0.8882	2423.0	12.12%	2406.5	12.04%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-8.864e-01	0.8899	1187.0	5.93%	1175.7	5.88%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-8.831e-01	0.8908	94.0	0.47%	90.5	0.45%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e0	-8.779e-01	0.8933	385.0	1.93%	378.1	1.89%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-8.764e-01	0.8933	12.0	0.06%	10.5	0.05%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e0	-8.744e-01	0.8933	398.0	1.99%	391.0	1.96%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-8.739e-01	0.8933	3766.0	18.83%	3747.7	18.75%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-8.737e-01	0.8933	6971.0	34.86%	6947.3	34.75%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e0	-8.721e-01	0.8933	552.0	2.76%	544.9	2.73%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-8.702e-01	0.8933	290.0	1.45%	284.2	1.42%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-8.670e-01	0.8933	956.0	4.78%	946.9	4.74%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-8.599e-01	0.8933	814.0	4.07%	805.4	4.03%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-8.523e-01	0.8977	226.0	1.13%	221.8	1.11%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-8.503e-01	0.8977	358.0	1.79%	352.3	1.76%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-8.271e-01	0.9164	678.0	3.39%	671.4	3.36%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.233e-01	0.9178	1255.0	6.28%	1246.5	6.23%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e0	-8.230e-01	0.9178	1593.0	7.96%	1583.5	7.92%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-8.177e-01	0.9188	539.0	2.70%	533.5	2.67%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e0	-8.119e-01	0.9220	8902.0	44.51%	8883.5	44.44%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-8.103e-01	0.9220	222.0	1.11%	218.1	1.09%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-7.933e-01	0.9351	293.0	1.47%	289.5	1.45%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-7.910e-01	0.9351	532.0	2.66%	527.7	2.64%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e0	-7.884e-01	0.9356	858.0	4.29%	852.5	4.26%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-7.873e-01	0.9356	327.0	1.64%	323.6	1.62%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e0	-7.847e-01	0.9356	597.0	2.99%	592.9	2.97%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-7.823e-01	0.9356	4532.0	22.66%	4520.7	22.61%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-7.812e-01	0.9356	13927.0	69.64%	13910.6	69.58%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-7.754e-01	0.9373	1553.0	7.76%	1546.5	7.74%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	-7.645e-01	0.9455	907.0	4.54%	902.6	4.51%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-7.645e-01	0.9455	1382.0	6.91%	1376.8	6.89%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-7.623e-01	0.9455	68.0	0.34%	66.3	0.33%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-7.603e-01	0.9455	3713.0	18.57%	3704.4	18.53%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-7.585e-01	0.9455	284.0	1.42%	281.4	1.41%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.563e-01	0.9455	80.0	0.40%	78.9	0.39%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-7.549e-01	0.9455	313.0	1.57%	310.3	1.55%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-7.530e-01	0.9455	2547.0	12.73%	2540.9	12.71%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-7.440e-01	0.9483	910.0	4.55%	906.9	4.54%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-7.424e-01	0.9483	957.0	4.78%	953.3	4.77%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-7.374e-01	0.9506	150.0	0.75%	148.1	0.74%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.243e-01	0.9609	266.0	1.33%	264.6	1.32%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.232e-01	0.9609	1867.0	9.34%	1863.8	9.32%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.232e-01	0.9609	946.0	4.73%	943.9	4.72%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.210e-01	0.9609	1043.0	5.21%	1040.9	5.21%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-7.175e-01	0.9609	1229.0	6.14%	1226.7	6.14%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e0	-7.157e-01	0.9609	427.0	2.14%	425.8	2.13%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-7.125e-01	0.9609	522.0	2.61%	520.1	2.60%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-7.101e-01	0.9609	613.0	3.06%	611.4	3.06%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-7.080e-01	0.9609	709.0	3.55%	707.3	3.54%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-6.959e-01	0.9699	1790.0	8.95%	1788.1	8.94%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e0	-6.928e-01	0.9709	2.0	0.01%	2.0	0.01%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-6.927e-01	0.9709	4.0	0.02%	3.0	0.02%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.924e-01	0.9709	9.0	0.04%	8.6	0.04%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-6.912e-01	0.9709	58.0	0.29%	57.7	0.29%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-6.895e-01	0.9709	207.0	1.03%	206.9	1.03%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-6.892e-01	0.9709	7741.0	38.70%	7737.0	38.70%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-6.863e-01	0.9709	699.0	3.50%	698.8	3.50%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-6.861e-01	0.9709	739.0	3.69%	738.2	3.69%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-6.856e-01	0.9709	853.0	4.26%	852.2	4.26%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-6.846e-01	0.9709	1082.0	5.41%	1081.2	5.41%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e0	-6.812e-01	0.9709	2021.0	10.11%	2020.1	10.10%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-6.682e-01	0.9725	1836.0	9.18%	1836.8	9.19%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-6.584e-01	0.9800	347.0	1.74%	347.4	1.74%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e0	-6.559e-01	0.9805	2307.0	11.54%	2308.6	11.55%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-6.528e-01	0.9816	231.0	1.16%	231.7	1.16%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.524e-01	0.9816	225.0	1.12%	225.2	1.13%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-6.480e-01	0.9823	904.0	4.52%	905.8	4.53%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-6.433e-01	0.9849	138.0	0.69%	138.8	0.69%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e0	-6.335e-01	0.9926	409.0	2.04%	410.1	2.05%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-6.335e-01	0.9926	2549.0	12.75%	2552.7	12.77%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-6.334e-01	0.9926	408.0	2.04%	409.4	2.05%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-6.184e-01	1.0000	2068.0	10.34%	2072.5	10.37%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e0	-6.179e-01	1.0000	232.0	1.16%	233.4	1.17%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-6.178e-01	1.0000	3802.0	19.01%	3808.0	19.05%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e0	-6.119e-01	1.0000	194.0	0.97%	195.8	0.98%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-6.094e-01	1.0000	432.0	2.16%	434.1	2.17%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-6.048e-01	1.0000	718.0	3.59%	721.6	3.61%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e0	-5.992e-01	1.0000	328.0	1.64%	330.1	1.65%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.963e-01	1.0000	569.0	2.84%	572.1	2.86%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-5.924e-01	1.0000	2808.0	14.04%	2815.1	14.08%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.917e-01	1.0000	4109.0	20.54%	4117.7	20.60%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.897e-01	1.0000	1773.0	8.87%	1779.9	8.90%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e0	-5.873e-01	1.0000	1139.0	5.70%	1145.0	5.73%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-5.834e-01	1.0000	98.0	0.49%	99.5	0.50%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-5.811e-01	1.0000	6172.0	30.86%	6183.0	30.93%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-5.795e-01	1.0000	3578.0	17.89%	3587.1	17.94%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-5.723e-01	1.0000	538.0	2.69%	542.9	2.72%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-5.630e-01	1.0000	668.0	3.34%	673.8	3.37%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.624e-01	1.0000	2185.0	10.93%	2194.5	10.98%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-5.592e-01	1.0000	262.0	1.31%	265.9	1.33%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-5.558e-01	1.0000	136.0	0.68%	138.7	0.69%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.546e-01	1.0000	801.0	4.00%	807.8	4.04%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-5.326e-01	1.0000	95.0	0.47%	97.3	0.49%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.296e-01	1.0000	261.0	1.31%	265.7	1.33%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.287e-01	1.0000	524.0	2.62%	531.0	2.66%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.192e-01	1.0000	457.0	2.28%	463.9	2.32%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-5.192e-01	1.0000	457.0	2.28%	463.9	2.32%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-5.131e-01	1.0000	32.0	0.16%	33.4	0.17%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-5.110e-01	1.0000	71.0	0.36%	73.2	0.37%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-5.109e-01	1.0000	1319.0	6.59%	1330.2	6.65%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-5.106e-01	1.0000	31.0	0.15%	32.8	0.16%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.099e-01	1.0000	70.0	0.35%	72.4	0.36%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e0	-5.065e-01	1.0000	385.0	1.93%	391.3	1.96%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-4.955e-01	1.0000	569.0	2.84%	577.7	2.89%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.941e-01	1.0000	239.0	1.20%	244.2	1.22%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-4.862e-01	1.0000	944.0	4.72%	955.0	4.78%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e0	-4.777e-01	1.0000	850.0	4.25%	861.8	4.31%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-4.745e-01	1.0000	1148.0	5.74%	1161.8	5.81%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-4.743e-01	1.0000	1551.0	7.75%	1566.6	7.84%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-4.694e-01	1.0000	327.0	1.64%	334.0	1.67%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e0	-4.665e-01	1.0000	405.0	2.02%	413.2	2.07%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-4.646e-01	1.0000	171.0	0.85%	176.7	0.88%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-4.616e-01	1.0000	986.0	4.93%	999.0	5.00%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-4.549e-01	1.0000	1064.0	5.32%	1078.2	5.39%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-4.472e-01	1.0000	1874.0	9.37%	1893.5	9.47%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-4.455e-01	1.0000	15.0	0.07%	16.6	0.08%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e0	-4.441e-01	1.0000	320.0	1.60%	328.5	1.64%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-4.385e-01	1.0000	553.0	2.77%	564.4	2.82%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-4.321e-01	1.0000	614.0	3.07%	626.7	3.13%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-4.264e-01	1.0000	9335.0	46.67%	9369.5	46.87%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e0	-4.203e-01	1.0000	742.0	3.71%	756.8	3.79%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e0	-4.128e-01	1.0000	431.0	2.15%	442.2	2.21%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-4.085e-01	1.0000	99.0	0.50%	105.0	0.53%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-4.065e-01	1.0000	481.0	2.40%	493.7	2.47%
SeqBias: G/A bias	RRRRRRRRRR	1e0	-4.037e-01	1.0000	19989.0	99.94%	19981.2	99.95%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.991e-01	1.0000	2248.0	11.24%	2274.6	11.38%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-3.991e-01	1.0000	2053.0	10.27%	2078.1	10.39%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-3.960e-01	1.0000	2176.0	10.88%	2202.6	11.02%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e0	-3.951e-01	1.0000	367.0	1.84%	378.2	1.89%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.922e-01	1.0000	494.0	2.47%	507.8	2.54%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e0	-3.922e-01	1.0000	571.0	2.85%	585.9	2.93%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-3.877e-01	1.0000	36.0	0.18%	39.7	0.20%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-3.869e-01	1.0000	1009.0	5.04%	1028.7	5.15%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.868e-01	1.0000	234.0	1.17%	243.4	1.22%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-3.863e-01	1.0000	340.0	1.70%	351.7	1.76%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e0	-3.851e-01	1.0000	3203.0	16.01%	3235.6	16.18%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-3.811e-01	1.0000	78.0	0.39%	83.2	0.42%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-3.796e-01	1.0000	139.0	0.69%	146.9	0.73%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e0	-3.786e-01	1.0000	1041.0	5.21%	1061.4	5.31%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-3.734e-01	1.0000	132.0	0.66%	139.6	0.70%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e0	-3.724e-01	1.0000	302.0	1.51%	313.8	1.57%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e0	-3.717e-01	1.0000	1571.0	7.85%	1596.6	7.99%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e0	-3.712e-01	1.0000	412.0	2.06%	425.8	2.13%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e0	-3.688e-01	1.0000	3915.0	19.57%	3952.4	19.77%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-3.669e-01	1.0000	241.0	1.21%	251.1	1.26%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-3.656e-01	1.0000	520.0	2.60%	535.9	2.68%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.654e-01	1.0000	238.0	1.19%	248.2	1.24%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e0	-3.640e-01	1.0000	2036.0	10.18%	2065.4	10.33%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e0	-3.637e-01	1.0000	447.0	2.23%	461.1	2.31%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-3.615e-01	1.0000	1312.0	6.56%	1336.7	6.69%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e0	-3.589e-01	1.0000	492.0	2.46%	507.4	2.54%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e0	-3.491e-01	1.0000	2383.0	11.92%	2416.4	12.09%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e0	-3.467e-01	1.0000	389.0	1.94%	403.3	2.02%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e0	-3.448e-01	1.0000	3958.0	19.79%	3999.1	20.00%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-3.443e-01	1.0000	627.0	3.14%	645.4	3.23%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e0	-3.427e-01	1.0000	1806.0	9.03%	1836.5	9.19%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.424e-01	1.0000	1319.0	6.59%	1345.1	6.73%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-3.418e-01	1.0000	3132.0	15.66%	3170.4	15.86%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.348e-01	1.0000	263.0	1.31%	275.8	1.38%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-3.324e-01	1.0000	1650.0	8.25%	1680.7	8.41%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-3.318e-01	1.0000	182.0	0.91%	192.0	0.96%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e0	-3.304e-01	1.0000	391.0	1.96%	406.5	2.03%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-3.292e-01	1.0000	118.0	0.59%	126.0	0.63%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e0	-3.289e-01	1.0000	338.0	1.69%	352.7	1.76%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-3.275e-01	1.0000	822.0	4.11%	844.8	4.23%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.214e-01	1.0000	138.0	0.69%	147.7	0.74%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-3.199e-01	1.0000	1832.0	9.16%	1865.1	9.33%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-3.185e-01	1.0000	3203.0	16.01%	3245.3	16.23%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-3.184e-01	1.0000	1362.0	6.81%	1391.8	6.96%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-3.183e-01	1.0000	164.0	0.82%	174.4	0.87%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e0	-3.122e-01	1.0000	2223.0	11.12%	2260.5	11.31%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-3.119e-01	1.0000	2831.0	14.16%	2872.6	14.37%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e0	-3.113e-01	1.0000	1591.0	7.95%	1624.0	8.12%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e0	-3.083e-01	1.0000	643.0	3.21%	664.8	3.33%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-3.077e-01	1.0000	640.0	3.20%	661.2	3.31%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-3.056e-01	1.0000	149.0	0.74%	159.6	0.80%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.020e-01	1.0000	18.0	0.09%	21.8	0.11%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-3.005e-01	1.0000	728.0	3.64%	751.8	3.76%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e0	-3.002e-01	1.0000	143.0	0.71%	153.3	0.77%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.968e-01	1.0000	343.0	1.71%	359.7	1.80%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-2.962e-01	1.0000	1710.0	8.55%	1745.3	8.73%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.958e-01	1.0000	584.0	2.92%	605.7	3.03%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e0	-2.955e-01	1.0000	262.0	1.31%	276.5	1.38%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-2.944e-01	1.0000	54.0	0.27%	60.5	0.30%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e0	-2.937e-01	1.0000	1287.0	6.44%	1318.4	6.59%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-2.919e-01	1.0000	417.0	2.08%	435.4	2.18%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e0	-2.913e-01	1.0000	4576.0	22.88%	4629.2	23.16%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e0	-2.909e-01	1.0000	3857.0	19.29%	3907.1	19.54%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-2.892e-01	1.0000	504.0	2.52%	524.9	2.63%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-2.888e-01	1.0000	1609.0	8.04%	1644.3	8.22%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-2.875e-01	1.0000	1.0	0.01%	1.9	0.01%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e0	-2.839e-01	1.0000	534.0	2.67%	555.5	2.78%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-2.828e-01	1.0000	636.0	3.18%	659.3	3.30%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.826e-01	1.0000	1437.0	7.18%	1471.6	7.36%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-2.744e-01	1.0000	8.0	0.04%	10.4	0.05%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e0	-2.743e-01	1.0000	327.0	1.64%	344.1	1.72%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-2.650e-01	1.0000	715.0	3.57%	741.3	3.71%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e0	-2.639e-01	1.0000	43.0	0.21%	49.3	0.25%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-2.639e-01	1.0000	2082.0	10.41%	2125.0	10.63%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.580e-01	1.0000	3784.0	18.92%	3840.6	19.21%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-2.543e-01	1.0000	251.0	1.26%	267.5	1.34%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.527e-01	1.0000	1287.0	6.44%	1323.1	6.62%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-2.525e-01	1.0000	312.0	1.56%	330.2	1.65%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-2.472e-01	1.0000	38.0	0.19%	44.7	0.22%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-2.468e-01	1.0000	50.0	0.25%	57.8	0.29%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-2.429e-01	1.0000	62.0	0.31%	70.9	0.35%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-2.426e-01	1.0000	394.0	1.97%	415.6	2.08%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e0	-2.394e-01	1.0000	4174.0	20.87%	4236.0	21.19%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-2.379e-01	1.0000	172.0	0.86%	186.7	0.93%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-2.361e-01	1.0000	35.0	0.18%	41.4	0.21%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-2.358e-01	1.0000	720.0	3.60%	749.3	3.75%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-2.346e-01	1.0000	1732.0	8.66%	1776.5	8.89%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e0	-2.338e-01	1.0000	167.0	0.83%	181.6	0.91%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e0	-2.327e-01	1.0000	2864.0	14.32%	2919.1	14.60%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e0	-2.293e-01	1.0000	639.0	3.19%	667.3	3.34%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e0	-2.237e-01	1.0000	4640.0	23.20%	4708.9	23.55%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e0	-2.236e-01	1.0000	67.0	0.34%	76.1	0.38%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-2.220e-01	1.0000	797.0	3.98%	829.8	4.15%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-2.180e-01	1.0000	8657.0	43.29%	8737.2	43.70%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.158e-01	1.0000	214.0	1.07%	231.3	1.16%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-2.152e-01	1.0000	63.0	0.32%	72.3	0.36%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e0	-2.146e-01	1.0000	1142.0	5.71%	1181.9	5.91%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e0	-2.138e-01	1.0000	799.0	4.00%	832.6	4.16%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.076e-01	1.0000	158.0	0.79%	173.4	0.87%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-2.074e-01	1.0000	2.0	0.01%	3.4	0.02%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-2.072e-01	1.0000	669.0	3.35%	700.7	3.51%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-2.068e-01	1.0000	759.0	3.79%	792.7	3.96%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-2.060e-01	1.0000	1837.0	9.19%	1888.0	9.44%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-2.040e-01	1.0000	58.0	0.29%	67.6	0.34%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-2.012e-01	1.0000	171.0	0.85%	187.1	0.94%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e0	-1.996e-01	1.0000	2258.0	11.29%	2314.5	11.58%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-1.995e-01	1.0000	1254.0	6.27%	1297.5	6.49%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-1.992e-01	1.0000	11498.0	57.49%	11582.3	57.93%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.927e-01	1.0000	181.0	0.91%	198.0	0.99%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e0	-1.912e-01	1.0000	3246.0	16.23%	3313.6	16.57%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-1.898e-01	1.0000	848.0	4.24%	885.3	4.43%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e0	-1.882e-01	1.0000	3810.0	19.05%	3882.9	19.42%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.806e-01	1.0000	480.0	2.40%	509.8	2.55%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e0	-1.743e-01	1.0000	263.0	1.31%	285.2	1.43%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-1.739e-01	1.0000	2490.0	12.45%	2554.8	12.78%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e0	-1.729e-01	1.0000	833.0	4.17%	872.4	4.36%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-1.721e-01	1.0000	390.0	1.95%	417.5	2.09%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e0	-1.697e-01	1.0000	650.0	3.25%	685.9	3.43%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.670e-01	1.0000	348.0	1.74%	374.0	1.87%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-1.653e-01	1.0000	246.0	1.23%	268.9	1.35%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e0	-1.624e-01	1.0000	1088.0	5.44%	1134.1	5.67%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-1.601e-01	1.0000	716.0	3.58%	754.2	3.77%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.590e-01	1.0000	635.0	3.17%	671.9	3.36%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-1.572e-01	1.0000	95.0	0.47%	109.3	0.55%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-1.509e-01	1.0000	631.0	3.16%	668.7	3.35%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e0	-1.506e-01	1.0000	24.0	0.12%	31.8	0.16%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.469e-01	1.0000	757.0	3.79%	798.0	3.99%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.466e-01	1.0000	19954.0	99.77%	19955.0	99.82%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.446e-01	1.0000	210.0	1.05%	232.2	1.16%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.442e-01	1.0000	1673.0	8.37%	1733.8	8.67%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e0	-1.438e-01	1.0000	502.0	2.51%	537.0	2.69%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.425e-01	1.0000	847.0	4.23%	891.1	4.46%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-1.408e-01	1.0000	1004.0	5.02%	1052.4	5.26%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-1.405e-01	1.0000	2802.0	14.01%	2878.2	14.40%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.400e-01	1.0000	378.0	1.89%	408.4	2.04%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e0	-1.395e-01	1.0000	429.0	2.15%	461.3	2.31%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.392e-01	1.0000	260.0	1.30%	285.3	1.43%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.340e-01	1.0000	909.0	4.54%	956.4	4.78%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e0	-1.322e-01	1.0000	2515.0	12.57%	2590.0	12.96%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e0	-1.322e-01	1.0000	246.0	1.23%	271.1	1.36%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-1.316e-01	1.0000	1925.0	9.62%	1992.9	9.97%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-1.291e-01	1.0000	15.0	0.07%	21.7	0.11%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-1.263e-01	1.0000	55.0	0.27%	67.3	0.34%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-1.263e-01	1.0000	2697.0	13.48%	2776.9	13.89%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e0	-1.245e-01	1.0000	5147.0	25.74%	5248.0	26.25%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e0	-1.241e-01	1.0000	1992.0	9.96%	2062.8	10.32%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.236e-01	1.0000	2253.0	11.27%	2327.9	11.64%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-1.200e-01	1.0000	4.0	0.02%	7.3	0.04%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-1.185e-01	1.0000	1716.0	8.58%	1783.2	8.92%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-1.182e-01	1.0000	1442.0	7.21%	1504.7	7.53%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.164e-01	1.0000	1684.0	8.42%	1751.4	8.76%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	-1.129e-01	1.0000	763.0	3.82%	810.8	4.06%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-1.105e-01	1.0000	206.0	1.03%	231.4	1.16%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.087e-01	1.0000	527.0	2.63%	567.3	2.84%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.085e-01	1.0000	1730.0	8.65%	1800.6	9.01%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-1.024e-01	1.0000	192.0	0.96%	217.9	1.09%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.019e-01	1.0000	315.0	1.57%	347.3	1.74%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e0	-9.860e-02	1.0000	346.0	1.73%	380.9	1.91%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e0	-9.696e-02	1.0000	428.0	2.14%	466.3	2.33%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-9.420e-02	1.0000	1162.0	5.81%	1224.6	6.13%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-9.374e-02	1.0000	486.0	2.43%	527.4	2.64%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-9.338e-02	1.0000	137.0	0.69%	159.7	0.80%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e0	-8.866e-02	1.0000	2346.0	11.73%	2433.8	12.17%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.658e-02	1.0000	2690.0	13.45%	2784.0	13.93%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-8.574e-02	1.0000	547.0	2.73%	592.3	2.96%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-8.522e-02	1.0000	1615.0	8.08%	1690.7	8.46%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e0	-8.459e-02	1.0000	236.0	1.18%	266.3	1.33%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.406e-02	1.0000	1055.0	5.27%	1117.0	5.59%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e0	-8.367e-02	1.0000	1943.0	9.71%	2025.6	10.13%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-7.983e-02	1.0000	1012.0	5.06%	1074.8	5.38%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-7.920e-02	1.0000	2678.0	13.39%	2774.8	13.88%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e0	-7.612e-02	1.0000	1698.0	8.49%	1778.2	8.89%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-7.311e-02	1.0000	529.0	2.65%	576.0	2.88%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-7.266e-02	1.0000	145.0	0.73%	170.4	0.85%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-7.232e-02	1.0000	1293.0	6.46%	1365.0	6.83%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e0	-7.231e-02	1.0000	1179.0	5.90%	1248.6	6.25%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.047e-02	1.0000	73.0	0.36%	91.2	0.46%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-7.036e-02	1.0000	1552.0	7.76%	1631.1	8.16%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-6.988e-02	1.0000	1149.0	5.75%	1218.2	6.09%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-6.804e-02	1.0000	1513.0	7.56%	1592.4	7.97%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e0	-6.804e-02	1.0000	360.0	1.80%	401.0	2.01%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e0	-6.747e-02	1.0000	544.0	2.72%	593.9	2.97%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-6.707e-02	1.0000	949.0	4.75%	1013.1	5.07%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-6.633e-02	1.0000	493.0	2.46%	540.9	2.71%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-6.491e-02	1.0000	21.0	0.10%	31.3	0.16%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e0	-6.227e-02	1.0000	2044.0	10.22%	2137.5	10.69%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-6.182e-02	1.0000	1223.0	6.12%	1297.0	6.49%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e0	-5.880e-02	1.0000	1216.0	6.08%	1291.8	6.46%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-5.740e-02	1.0000	969.0	4.84%	1037.2	5.19%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.629e-02	1.0000	441.0	2.21%	488.9	2.45%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-5.537e-02	1.0000	5679.0	28.39%	5821.5	29.12%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-5.437e-02	1.0000	795.0	3.98%	858.1	4.29%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e0	-5.340e-02	1.0000	372.0	1.86%	416.7	2.08%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e0	-5.302e-02	1.0000	18.0	0.09%	28.5	0.14%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-5.206e-02	1.0000	909.0	4.54%	977.4	4.89%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.203e-02	1.0000	438.0	2.19%	486.5	2.43%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-4.996e-02	1.0000	942.0	4.71%	1012.8	5.07%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.983e-02	1.0000	1323.0	6.62%	1405.7	7.03%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-4.918e-02	1.0000	6.0	0.03%	12.6	0.06%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e0	-4.897e-02	1.0000	498.0	2.49%	551.0	2.76%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-4.845e-02	1.0000	1717.0	8.58%	1810.4	9.06%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e0	-4.628e-02	1.0000	1920.0	9.60%	2019.6	10.10%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.518e-02	1.0000	114.0	0.57%	140.5	0.70%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-4.473e-02	1.0000	530.0	2.65%	585.8	2.93%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e0	-4.439e-02	1.0000	749.0	3.74%	814.9	4.08%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-4.282e-02	1.0000	148.0	0.74%	178.7	0.89%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-4.243e-02	1.0000	202.0	1.01%	237.5	1.19%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.221e-02	1.0000	552.0	2.76%	609.9	3.05%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-4.026e-02	1.0000	2290.0	11.45%	2401.2	12.01%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-4.015e-02	1.0000	271.0	1.35%	312.5	1.56%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.908e-02	1.0000	890.0	4.45%	963.4	4.82%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e0	-3.892e-02	1.0000	1846.0	9.23%	1948.7	9.75%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e0	-3.652e-02	1.0000	1413.0	7.07%	1505.5	7.53%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e0	-3.619e-02	1.0000	604.0	3.02%	666.3	3.33%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-3.608e-02	1.0000	2188.0	10.94%	2300.8	11.51%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-3.522e-02	1.0000	2069.0	10.35%	2179.6	10.90%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e0	-3.369e-02	1.0000	663.0	3.31%	729.1	3.65%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-3.300e-02	1.0000	13.0	0.07%	23.2	0.12%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-3.282e-02	1.0000	165.0	0.83%	200.0	1.00%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e0	-3.191e-02	1.0000	1876.0	9.38%	1984.0	9.92%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.176e-02	1.0000	583.0	2.92%	646.7	3.23%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e0	-3.111e-02	1.0000	1591.0	7.95%	1692.9	8.47%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-3.087e-02	1.0000	107.0	0.53%	135.8	0.68%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e0	-3.028e-02	1.0000	1338.0	6.69%	1432.6	7.17%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e0	-2.979e-02	1.0000	1236.0	6.18%	1327.8	6.64%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-2.967e-02	1.0000	1355.0	6.78%	1450.4	7.25%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-2.960e-02	1.0000	147.0	0.73%	180.1	0.90%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e0	-2.848e-02	1.0000	731.0	3.65%	803.5	4.02%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.718e-02	1.0000	1326.0	6.63%	1422.3	7.11%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e0	-2.702e-02	1.0000	346.0	1.73%	397.9	1.99%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e0	-2.628e-02	1.0000	2282.0	11.41%	2405.5	12.03%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e0	-2.570e-02	1.0000	474.0	2.37%	534.1	2.67%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.424e-02	1.0000	1988.0	9.94%	2106.5	10.54%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.268e-02	1.0000	1575.0	7.88%	1684.0	8.42%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-2.178e-02	1.0000	1710.0	8.55%	1823.3	9.12%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e0	-2.157e-02	1.0000	151.0	0.76%	187.5	0.94%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.002e-02	1.0000	1744.0	8.72%	1860.9	9.31%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e0	-1.923e-02	1.0000	1712.0	8.56%	1828.4	9.15%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e0	-1.832e-02	1.0000	466.0	2.33%	530.9	2.66%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-1.820e-02	1.0000	649.0	3.25%	724.2	3.62%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e0	-1.501e-02	1.0000	948.0	4.74%	1041.1	5.21%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-1.460e-02	1.0000	853.0	4.26%	942.4	4.71%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	-1.354e-02	1.0000	300.0	1.50%	355.6	1.78%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-1.325e-02	1.0000	52.0	0.26%	76.2	0.38%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-1.325e-02	1.0000	2095.0	10.47%	2231.9	11.16%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.305e-02	1.0000	476.0	2.38%	545.1	2.73%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e0	-1.259e-02	1.0000	142.0	0.71%	181.7	0.91%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e0	-1.236e-02	1.0000	525.0	2.62%	598.5	2.99%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-1.184e-02	1.0000	296.0	1.48%	352.1	1.76%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e0	-1.101e-02	1.0000	299.0	1.49%	356.8	1.78%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e0	-1.098e-02	1.0000	1943.0	9.71%	2079.1	10.40%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e0	-1.034e-02	1.0000	961.0	4.81%	1061.7	5.31%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e0	-9.536e-03	1.0000	643.0	3.21%	727.0	3.64%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e0	-8.902e-03	1.0000	710.0	3.55%	799.2	4.00%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.025e-03	1.0000	2602.0	13.01%	2764.3	13.83%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e0	-7.854e-03	1.0000	1228.0	6.14%	1345.2	6.73%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e0	-7.776e-03	1.0000	662.0	3.31%	750.7	3.76%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-6.961e-03	1.0000	1593.0	7.96%	1727.7	8.64%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-6.409e-03	1.0000	4403.0	22.02%	4608.1	23.05%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.271e-03	1.0000	164.0	0.82%	211.8	1.06%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e0	-5.792e-03	1.0000	3731.0	18.66%	3927.3	19.64%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-5.492e-03	1.0000	292.0	1.46%	355.2	1.78%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e0	-5.034e-03	1.0000	1006.0	5.03%	1120.8	5.61%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-5.000e-03	1.0000	174.0	0.87%	225.0	1.13%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e0	-4.841e-03	1.0000	281.0	1.41%	344.2	1.72%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-3.310e-03	1.0000	537.0	2.69%	627.2	3.14%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e0	-3.219e-03	1.0000	1100.0	5.50%	1226.7	6.14%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-3.086e-03	1.0000	185.0	0.92%	241.0	1.21%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e0	-2.875e-03	1.0000	303.0	1.52%	373.7	1.87%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.736e-03	1.0000	3590.0	17.95%	3803.6	19.03%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-2.682e-03	1.0000	1384.0	6.92%	1527.7	7.64%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e0	-2.678e-03	1.0000	254.0	1.27%	319.3	1.60%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e0	-2.629e-03	1.0000	71.0	0.36%	107.1	0.54%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.981e-03	1.0000	1221.0	6.11%	1362.0	6.81%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e0	-1.977e-03	1.0000	275.0	1.38%	345.2	1.73%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e0	-1.910e-03	1.0000	382.0	1.91%	464.3	2.32%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e0	-1.894e-03	1.0000	476.0	2.38%	567.2	2.84%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-1.834e-03	1.0000	1018.0	5.09%	1148.9	5.75%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-1.568e-03	1.0000	27.0	0.14%	52.3	0.26%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e0	-1.533e-03	1.0000	1147.0	5.73%	1287.1	6.44%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e0	-1.458e-03	1.0000	980.0	4.90%	1111.2	5.56%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e0	-1.455e-03	1.0000	1379.0	6.89%	1532.1	7.66%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-1.290e-03	1.0000	1545.0	7.72%	1708.3	8.55%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.114e-03	1.0000	2396.0	11.98%	2596.4	12.99%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-9.200e-04	1.0000	1279.0	6.40%	1434.2	7.17%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e0	-6.970e-04	1.0000	1330.0	6.65%	1492.9	7.47%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e0	-6.540e-04	1.0000	1501.0	7.51%	1673.9	8.37%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e0	-6.170e-04	1.0000	1159.0	5.79%	1313.7	6.57%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-5.320e-04	1.0000	335.0	1.68%	423.1	2.12%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e0	-5.320e-04	1.0000	1046.0	5.23%	1195.5	5.98%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e0	-5.130e-04	1.0000	784.0	3.92%	915.3	4.58%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e0	-4.240e-04	1.0000	2078.0	10.39%	2284.4	11.43%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e0	-4.150e-04	1.0000	2069.0	10.35%	2275.8	11.38%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.070e-04	1.0000	465.0	2.33%	570.5	2.85%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.800e-04	1.0000	716.0	3.58%	845.5	4.23%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-3.550e-04	1.0000	349.0	1.75%	442.8	2.21%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e0	-3.120e-04	1.0000	295.0	1.47%	382.8	1.91%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.390e-04	1.0000	2517.0	12.58%	2751.8	13.76%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-2.010e-04	1.0000	2780.0	13.90%	3027.9	15.15%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.880e-04	1.0000	984.0	4.92%	1142.5	5.71%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.790e-04	1.0000	62.0	0.31%	107.2	0.54%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.360e-04	1.0000	288.0	1.44%	380.5	1.90%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.320e-04	1.0000	14.0	0.07%	39.2	0.20%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.260e-04	1.0000	740.0	3.70%	883.6	4.42%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e0	-1.230e-04	1.0000	417.0	2.08%	527.3	2.64%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-1.220e-04	1.0000	1429.0	7.14%	1622.1	8.11%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-1.110e-04	1.0000	1279.0	6.40%	1464.4	7.33%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e0	-1.070e-04	1.0000	801.0	4.00%	951.4	4.76%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e0	-8.700e-05	1.0000	477.0	2.38%	597.2	2.99%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e0	-8.200e-05	1.0000	1469.0	7.34%	1670.8	8.36%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e0	-5.000e-05	1.0000	1728.0	8.64%	1951.7	9.76%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-4.900e-05	1.0000	384.0	1.92%	497.3	2.49%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e0	-4.500e-05	1.0000	1297.0	6.49%	1495.3	7.48%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-4.400e-05	1.0000	842.0	4.21%	1005.6	5.03%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e0	-4.000e-05	1.0000	723.0	3.62%	877.0	4.39%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e0	-3.200e-05	1.0000	1158.0	5.79%	1350.5	6.76%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	-2.600e-05	1.0000	1539.0	7.70%	1760.8	8.81%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e0	-2.000e-05	1.0000	1033.0	5.17%	1221.6	6.11%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e0	-1.800e-05	1.0000	1831.0	9.16%	2074.0	10.37%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.400e-05	1.0000	402.0	2.01%	527.7	2.64%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e0	-1.100e-05	1.0000	1384.0	6.92%	1605.4	8.03%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-9.000e-06	1.0000	1149.0	5.75%	1355.3	6.78%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-7.000e-06	1.0000	355.0	1.77%	478.5	2.39%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-5.000e-06	1.0000	2539.0	12.70%	2837.6	14.19%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-5.000e-06	1.0000	1159.0	5.79%	1373.3	6.87%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e0	-2.000e-06	1.0000	1631.0	8.15%	1891.9	9.46%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e0	-1.000e-06	1.0000	1446.0	7.23%	1702.3	8.51%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.000e-06	1.0000	921.0	4.61%	1134.3	5.67%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-0.000e+00	1.0000	2901.0	14.51%	3255.9	16.29%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e0	-0.000e+00	1.0000	2695.0	13.48%	3047.8	15.25%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-0.000e+00	1.0000	2134.0	10.67%	2454.7	12.28%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e0	-0.000e+00	1.0000	1505.0	7.52%	1782.0	8.91%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-0.000e+00	1.0000	515.0	2.57%	690.0	3.45%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	1958.0	9.79%	2276.5	11.39%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-0.000e+00	1.0000	310.0	1.55%	451.5	2.26%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e0	-0.000e+00	1.0000	1436.0	7.18%	1719.7	8.60%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	891.0	4.46%	1124.0	5.62%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	171.0	0.85%	284.0	1.42%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-0.000e+00	1.0000	1458.0	7.29%	1773.9	8.87%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	1547.0	7.74%	1874.4	9.38%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	2726.0	13.63%	3144.9	15.73%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	1797.0	8.98%	2169.9	10.85%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e0	-0.000e+00	1.0000	646.0	3.23%	884.6	4.42%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-0.000e+00	1.0000	1448.0	7.24%	2119.6	10.60%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-0.000e+00	1.0000	2942.0	14.71%	3409.3	17.05%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	768.0	3.84%	1114.8	5.58%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	1616.0	8.08%	2165.5	10.83%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-0.000e+00	1.0000	1497.0	7.49%	2075.9	10.38%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	4505.0	22.53%	5173.1	25.88%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	2173.0	10.87%	2901.3	14.51%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-0.000e+00	1.0000	1775.0	8.88%	2378.5	11.90%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	98.0	0.49%	632.4	3.16%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	98.0	0.49%	632.4	3.16%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e0	-0.000e+00	1.0000	5774.0	28.87%	6415.0	32.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	564.0	2.82%	849.8	4.25%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-0.000e+00	1.0000	1321.0	6.60%	1816.7	9.09%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-0.000e+00	1.0000	222.0	1.11%	400.3	2.00%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	1280.0	6.40%	1790.6	8.96%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-0.000e+00	1.0000	3102.0	15.51%	3829.8	19.16%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-0.000e+00	1.0000	1074.0	5.37%	1479.3	7.40%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-0.000e+00	1.0000	166.0	0.83%	429.0	2.15%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-0.000e+00	1.0000	182.0	0.91%	443.7	2.22%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	1814.0	9.07%	2420.0	12.10%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	301.0	1.50%	528.1	2.64%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e0	-0.000e+00	1.0000	65.0	0.33%	360.3	1.80%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	664.0	3.32%	1627.4	8.14%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-0.000e+00	1.0000	417.0	2.08%	937.0	4.69%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	67.0	0.34%	177.1	0.89%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-0.000e+00	1.0000	62.0	0.31%	538.4	2.69%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-0.000e+00	1.0000	18.0	0.09%	262.5	1.31%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e0	-0.000e+00	1.0000	0.0	0.00%	3.3	0.02%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	19991.9	100.00%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%