Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 20000)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 43521)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-307	-7.084e+02	0.0000	2908.0	14.54%	2337.1	5.37%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-302	-6.968e+02	0.0000	2910.0	14.55%	2365.2	5.43%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-266	-6.135e+02	0.0000	1934.0	9.67%	1249.2	2.87%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-233	-5.378e+02	0.0000	2407.0	12.04%	2023.1	4.65%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-193	-4.446e+02	0.0000	4315.0	21.57%	5337.5	12.26%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-187	-4.323e+02	0.0000	3516.0	17.58%	4034.0	9.26%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e-185	-4.276e+02	0.0000	552.0	2.76%	85.1	0.20%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-176	-4.074e+02	0.0000	659.0	3.29%	176.4	0.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-176	-4.074e+02	0.0000	659.0	3.29%	176.4	0.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-174	-4.026e+02	0.0000	4727.0	23.64%	6241.1	14.33%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-158	-3.655e+02	0.0000	362.0	1.81%	15.2	0.03%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-138	-3.183e+02	0.0000	486.0	2.43%	115.1	0.26%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-136	-3.138e+02	0.0000	3797.0	18.98%	4998.4	11.48%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-134	-3.107e+02	0.0000	2271.0	11.36%	2451.0	5.63%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-126	-2.906e+02	0.0000	515.0	2.57%	162.0	0.37%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-112	-2.584e+02	0.0000	925.0	4.62%	649.6	1.49%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-109	-2.522e+02	0.0000	893.0	4.46%	622.0	1.43%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-109	-2.517e+02	0.0000	435.0	2.17%	131.4	0.30%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-109	-2.513e+02	0.0000	553.0	2.77%	239.7	0.55%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-108	-2.496e+02	0.0000	1794.0	8.97%	1909.2	4.38%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-106	-2.454e+02	0.0000	1011.0	5.05%	786.5	1.81%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-101	-2.331e+02	0.0000	264.0	1.32%	25.5	0.06%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-101	-2.331e+02	0.0000	3355.0	16.78%	4611.2	10.59%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-93	-2.141e+02	0.0000	893.0	4.46%	699.3	1.61%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-92	-2.138e+02	0.0000	1084.0	5.42%	960.9	2.21%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-90	-2.077e+02	0.0000	1615.0	8.08%	1773.1	4.07%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e-89	-2.067e+02	0.0000	546.0	2.73%	291.6	0.67%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-87	-2.025e+02	0.0000	978.0	4.89%	841.2	1.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-83	-1.924e+02	0.0000	2172.0	10.86%	2747.4	6.31%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-83	-1.912e+02	0.0000	1433.0	7.17%	1547.0	3.55%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-81	-1.885e+02	0.0000	1828.0	9.14%	2189.1	5.03%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-81	-1.876e+02	0.0000	818.0	4.09%	659.0	1.51%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-80	-1.857e+02	0.0000	3361.0	16.80%	4888.7	11.23%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-79	-1.825e+02	0.0000	2600.0	13.00%	3536.1	8.12%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-78	-1.811e+02	0.0000	3087.0	15.43%	4415.5	10.14%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-76	-1.762e+02	0.0000	3611.0	18.05%	5410.0	12.42%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-76	-1.760e+02	0.0000	809.0	4.04%	674.6	1.55%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-75	-1.732e+02	0.0000	3353.0	16.77%	4950.6	11.37%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-73	-1.700e+02	0.0000	2185.0	10.93%	2875.7	6.60%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-72	-1.678e+02	0.0000	4688.0	23.44%	7518.9	17.26%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-72	-1.668e+02	0.0000	3670.0	18.35%	5582.3	12.82%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-71	-1.646e+02	0.0000	2089.0	10.45%	2736.3	6.28%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-71	-1.646e+02	0.0000	3541.0	17.71%	5355.3	12.30%
bZIP50(bZIP)/colamp-bZIP50-DAP-Seq(GSE60143)/Homer	GATGACGTCA	1e-68	-1.586e+02	0.0000	2019.0	10.10%	2645.9	6.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-68	-1.578e+02	0.0000	1077.0	5.38%	1111.8	2.55%
FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer	TGACGTCACS	1e-67	-1.551e+02	0.0000	2307.0	11.54%	3165.1	7.27%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-65	-1.504e+02	0.0000	3643.0	18.21%	5645.9	12.96%
TGA4(bZIP)/colamp-TGA4-DAP-Seq(GSE60143)/Homer	RTGACGTCAKCW	1e-64	-1.488e+02	0.0000	789.0	3.94%	715.3	1.64%
TGA6(bZIP)/colamp-TGA6-DAP-Seq(GSE60143)/Homer	TGACGTCABC	1e-61	-1.408e+02	0.0000	1315.0	6.58%	1546.8	3.55%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-60	-1.402e+02	0.0000	650.0	3.25%	544.6	1.25%
TGA5(bZIP)/col-TGA5-DAP-Seq(GSE60143)/Homer	NNGATGACGTCATCN	1e-59	-1.375e+02	0.0000	428.0	2.14%	267.6	0.61%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-59	-1.360e+02	0.0000	857.0	4.29%	850.4	1.95%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-58	-1.351e+02	0.0000	3881.0	19.41%	6214.9	14.27%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-58	-1.347e+02	0.0000	1001.0	5.00%	1072.2	2.46%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-57	-1.314e+02	0.0000	328.0	1.64%	165.5	0.38%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-55	-1.281e+02	0.0000	439.0	2.20%	297.8	0.68%
TGA1(bZIP)/colamp-TGA1-DAP-Seq(GSE60143)/Homer	TGACGTCAKC	1e-53	-1.242e+02	0.0000	972.0	4.86%	1064.6	2.44%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-52	-1.205e+02	0.0000	2582.0	12.91%	3871.8	8.89%
TGA3(bZIP)/colamp-TGA3-DAP-Seq(GSE60143)/Homer	WTGATGACGTCATCW	1e-50	-1.171e+02	0.0000	336.0	1.68%	195.4	0.45%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-50	-1.154e+02	0.0000	447.0	2.23%	332.8	0.76%
dHNF4(NR)/Fly-HNF4-ChIP-Seq(GSE73675)/Homer	GGTCCAAAGTCCAMT	1e-49	-1.151e+02	0.0000	405.0	2.02%	280.9	0.65%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-47	-1.084e+02	0.0000	1247.0	6.24%	1574.2	3.61%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-46	-1.082e+02	0.0000	435.0	2.17%	332.7	0.76%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-45	-1.039e+02	0.0000	2102.0	10.51%	3102.6	7.12%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-44	-1.028e+02	0.0000	387.0	1.93%	282.1	0.65%
TGA2(bZIP)/colamp-TGA2-DAP-Seq(GSE60143)/Homer	ACGTCAYCHH	1e-42	-9.746e+01	0.0000	1118.0	5.59%	1409.3	3.24%
HY5(bZIP)/colamp-HY5-DAP-Seq(GSE60143)/Homer	RRTSACGTSD	1e-41	-9.577e+01	0.0000	1519.0	7.60%	2108.0	4.84%
TGA10(bZIP)/colamp-TGA10-DAP-Seq(GSE60143)/Homer	ATGACGTC	1e-40	-9.354e+01	0.0000	1249.0	6.25%	1650.7	3.79%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-40	-9.317e+01	0.0000	2124.0	10.62%	3216.5	7.39%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-39	-9.095e+01	0.0000	961.0	4.81%	1178.7	2.71%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e-39	-8.989e+01	0.0000	772.0	3.86%	877.6	2.02%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-38	-8.869e+01	0.0000	5108.0	25.54%	9082.4	20.86%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-37	-8.583e+01	0.0000	3950.0	19.75%	6791.7	15.60%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-35	-8.255e+01	0.0000	959.0	4.79%	1213.1	2.79%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-34	-7.955e+01	0.0000	1174.0	5.87%	1595.7	3.66%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-31	-7.348e+01	0.0000	2040.0	10.20%	3208.3	7.37%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-30	-7.098e+01	0.0000	2687.0	13.44%	4464.9	10.25%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-30	-7.004e+01	0.0000	2207.0	11.04%	3552.6	8.16%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e-30	-6.974e+01	0.0000	2116.0	10.58%	3382.7	7.77%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-30	-6.960e+01	0.0000	498.0	2.49%	525.9	1.21%
TGA9(bZIP)/colamp-TGA9-DAP-Seq(GSE60143)/Homer	VTGACGTC	1e-29	-6.862e+01	0.0000	2056.0	10.28%	3278.3	7.53%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-29	-6.799e+01	0.0000	1678.0	8.39%	2576.8	5.92%
BIM3(bHLH)/col-BIM3-DAP-Seq(GSE60143)/Homer	TWVTCACGTGAB	1e-28	-6.669e+01	0.0000	386.0	1.93%	368.8	0.85%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-25	-5.929e+01	0.0000	1427.0	7.13%	2178.8	5.00%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-24	-5.738e+01	0.0000	1867.0	9.34%	3017.6	6.93%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-24	-5.737e+01	0.0000	1972.0	9.86%	3217.7	7.39%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-24	-5.731e+01	0.0000	2070.0	10.35%	3405.8	7.82%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-23	-5.459e+01	0.0000	750.0	3.75%	999.3	2.29%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-23	-5.407e+01	0.0000	2370.0	11.85%	4018.0	9.23%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-22	-5.167e+01	0.0000	2316.0	11.58%	3937.5	9.04%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e-21	-5.042e+01	0.0000	472.0	2.36%	556.2	1.28%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-21	-4.920e+01	0.0000	1489.0	7.45%	2374.3	5.45%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-21	-4.851e+01	0.0000	1028.0	5.14%	1528.0	3.51%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-20	-4.720e+01	0.0000	1183.0	5.92%	1820.0	4.18%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-20	-4.700e+01	0.0000	3220.0	16.10%	5784.0	13.28%
BIM1(bHLH)/colamp-BIM1-DAP-Seq(GSE60143)/Homer	NNNNNNVTCACGTGM	1e-20	-4.631e+01	0.0000	304.0	1.52%	310.6	0.71%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-19	-4.537e+01	0.0000	2150.0	10.75%	3681.5	8.45%
ATAF1(NAC)/col-ATAF1-DAP-Seq(GSE60143)/Homer	YACGTMAY	1e-17	-4.135e+01	0.0000	3702.0	18.51%	6840.9	15.71%
ERF9(AP2EREBP)/colamp-ERF9-DAP-Seq(GSE60143)/Homer	AWATGGCGGCGG	1e-17	-3.916e+01	0.0000	679.0	3.40%	964.9	2.22%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-16	-3.832e+01	0.0000	1761.0	8.80%	3000.5	6.89%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-16	-3.801e+01	0.0000	2690.0	13.45%	4841.2	11.12%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-16	-3.797e+01	0.0000	514.0	2.57%	684.4	1.57%
LOB(LOBAS2)/col-LOB-DAP-Seq(GSE60143)/Homer	CGCCGKAWWTTHCGS	1e-15	-3.661e+01	0.0000	491.0	2.46%	652.3	1.50%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-15	-3.562e+01	0.0000	3045.0	15.22%	5591.3	12.84%
BIM2(bHLH)/col-BIM2-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNN	1e-15	-3.520e+01	0.0000	1587.0	7.94%	2697.0	6.19%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e-15	-3.503e+01	0.0000	1914.0	9.57%	3337.4	7.66%
LBD13(LOBAS2)/colamp-LBD13-DAP-Seq(GSE60143)/Homer	KCCGTNWTTTBCGGC	1e-14	-3.295e+01	0.0000	1480.0	7.40%	2513.3	5.77%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-14	-3.273e+01	0.0000	1887.0	9.44%	3312.6	7.61%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e-13	-3.162e+01	0.0000	2302.0	11.51%	4152.7	9.54%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-13	-3.161e+01	0.0000	2634.0	13.17%	4820.8	11.07%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e-13	-3.130e+01	0.0000	715.0	3.57%	1082.4	2.49%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e-12	-2.828e+01	0.0000	2145.0	10.72%	3885.4	8.92%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-12	-2.778e+01	0.0000	2003.0	10.02%	3608.7	8.29%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-11	-2.754e+01	0.0000	2987.0	14.94%	5603.9	12.87%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-11	-2.688e+01	0.0000	219.0	1.09%	248.2	0.57%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e-11	-2.627e+01	0.0000	2228.0	11.14%	4082.5	9.37%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-11	-2.560e+01	0.0000	3390.0	16.95%	6466.3	14.85%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-10	-2.433e+01	0.0000	385.0	1.93%	538.6	1.24%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e-10	-2.426e+01	0.0000	849.0	4.25%	1391.2	3.19%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-10	-2.402e+01	0.0000	872.0	4.36%	1437.1	3.30%
AT5G05550(Trihelix)/col-AT5G05550-DAP-Seq(GSE60143)/Homer	HDNHDTCKCCGGMGA	1e-10	-2.395e+01	0.0000	2283.0	11.42%	4230.3	9.71%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-10	-2.323e+01	0.0000	3670.0	18.35%	7094.0	16.29%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-9	-2.298e+01	0.0000	296.0	1.48%	392.8	0.90%
AREB3(bZIP)/col-AREB3-DAP-Seq(GSE60143)/Homer	NKGMCACGTGDCMNN	1e-9	-2.298e+01	0.0000	523.0	2.61%	795.0	1.83%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-9	-2.210e+01	0.0000	2071.0	10.36%	3831.3	8.80%
GT3a(Trihelix)/col-GT3a-DAP-Seq(GSE60143)/Homer	WNACACGTGTYWWAW	1e-9	-2.196e+01	0.0000	323.0	1.62%	444.0	1.02%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-9	-2.161e+01	0.0000	1786.0	8.93%	3264.3	7.50%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-9	-2.080e+01	0.0000	1013.0	5.07%	1743.7	4.00%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-8	-2.068e+01	0.0000	569.0	2.84%	897.0	2.06%
ABF2(bZIP)/col-ABF2-DAP-Seq(GSE60143)/Homer	KGMCACGTGDCMHHH	1e-8	-2.033e+01	0.0000	392.0	1.96%	576.8	1.32%
bZIP3(bZIP)/col-bZIP3-DAP-Seq(GSE60143)/Homer	DWKNHSACGTGGCAD	1e-8	-1.972e+01	0.0000	842.0	4.21%	1424.2	3.27%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-8	-1.970e+01	0.0000	459.0	2.30%	702.9	1.61%
bZIP68(bZIP)/col-bZIP68-DAP-Seq(GSE60143)/Homer	WGCCACGTGK	1e-8	-1.947e+01	0.0000	557.0	2.79%	885.9	2.03%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-8	-1.923e+01	0.0000	4042.0	20.21%	7959.3	18.28%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-8	-1.918e+01	0.0000	1839.0	9.20%	3410.8	7.83%
WRKY71(WRKY)/col-WRKY71-DAP-Seq(GSE60143)/Homer	CKTTGACYWW	1e-8	-1.911e+01	0.0000	1326.0	6.63%	2381.7	5.47%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-8	-1.897e+01	0.0000	1122.0	5.61%	1979.2	4.54%
RAP212(AP2EREBP)/col-RAP212-DAP-Seq(GSE60143)/Homer	CGCCGCCATTTT	1e-8	-1.873e+01	0.0000	1393.0	6.97%	2520.4	5.79%
ANAC042(NAC)/col-ANAC042-DAP-Seq(GSE60143)/Homer	CGTNDHNDHNACGKY	1e-8	-1.850e+01	0.0000	986.0	4.93%	1718.6	3.95%
NAM(NAC)/col-NAM-DAP-Seq(GSE60143)/Homer	RGTTRCGTRW	1e-7	-1.820e+01	0.0000	1570.0	7.85%	2883.9	6.62%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-7	-1.810e+01	0.0000	242.0	1.21%	326.4	0.75%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e-7	-1.799e+01	0.0000	443.0	2.21%	687.0	1.58%
bZIP16(bZIP)/colamp-bZIP16-DAP-Seq(GSE60143)/Homer	TGCCACGTGD	1e-7	-1.782e+01	0.0000	445.0	2.23%	691.2	1.59%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e-7	-1.754e+01	0.0000	2933.0	14.67%	5686.9	13.06%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-7	-1.713e+01	0.0000	1547.0	7.74%	2854.5	6.55%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-7	-1.658e+01	0.0000	6894.0	34.47%	14084.3	32.34%
bZIP28(bZIP)/col-bZIP28-DAP-Seq(GSE60143)/Homer	TGCCACGTSABH	1e-7	-1.642e+01	0.0000	449.0	2.25%	710.7	1.63%
bHLH18(bHLH)/col-bHLH18-DAP-Seq(GSE60143)/Homer	CACGTGTTYCACGTG	1e-7	-1.617e+01	0.0000	51.0	0.26%	35.1	0.08%
WRKY24(WRKY)/colamp-WRKY24-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-6	-1.567e+01	0.0000	1419.0	7.09%	2620.3	6.02%
WRKY28(WRKY)/col-WRKY28-DAP-Seq(GSE60143)/Homer	BGTTGACTWH	1e-6	-1.555e+01	0.0000	2119.0	10.60%	4048.2	9.30%
GT2(Trihelix)/colamp-GT2-DAP-Seq(GSE60143)/Homer	AMGGTAAAWWWN	1e-6	-1.505e+01	0.0000	1858.0	9.29%	3523.3	8.09%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-6	-1.485e+01	0.0000	1227.0	6.13%	2247.6	5.16%
bZIP48(bZIP)/colamp-bZIP48-DAP-Seq(GSE60143)/Homer	DDWWKVTSACGTGGC	1e-6	-1.480e+01	0.0000	536.0	2.68%	889.9	2.04%
WRKY25(WRKY)/colamp-WRKY25-DAP-Seq(GSE60143)/Homer	NNNNHRGTCAAMNNN	1e-6	-1.480e+01	0.0000	1838.0	9.19%	3487.8	8.01%
LBD23(LOBAS2)/colamp-LBD23-DAP-Seq(GSE60143)/Homer	GCGNAWWWTNCGCYW	1e-6	-1.475e+01	0.0000	1556.0	7.78%	2913.3	6.69%
ERF4(AP2EREBP)/colamp-ERF4-DAP-Seq(GSE60143)/Homer	WDWTGGCGGCGG	1e-6	-1.475e+01	0.0000	1904.0	9.52%	3624.0	8.32%
AT5G47660(Trihelix)/colamp-AT5G47660-DAP-Seq(GSE60143)/Homer	AWTTTTACCG	1e-6	-1.472e+01	0.0000	2475.0	12.38%	4800.1	11.02%
ERF3(AP2EREBP)/colamp-ERF3-DAP-Seq(GSE60143)/Homer	ATGGCGGCGG	1e-6	-1.466e+01	0.0000	1372.0	6.86%	2542.4	5.84%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-6	-1.446e+01	0.0000	287.0	1.44%	428.6	0.98%
BPC1(BBRBPC)/colamp-BPC1-DAP-Seq(GSE60143)/Homer	GARGAGAGAGAA	1e-6	-1.428e+01	0.0000	1002.0	5.01%	1806.8	4.15%
bZIP53(bZIP)/colamp-bZIP53-DAP-Seq(GSE60143)/Homer	NDNHSACGTGKMNNN	1e-6	-1.412e+01	0.0000	482.0	2.41%	794.0	1.82%
HAT2(Homeobox)/colamp-HAT2-DAP-Seq(GSE60143)/Homer	CYAATSATTR	1e-6	-1.398e+01	0.0000	1384.0	6.92%	2578.7	5.92%
WRKY6(WRKY)/colamp-WRKY6-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWD	1e-6	-1.397e+01	0.0000	1450.0	7.25%	2712.6	6.23%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-6	-1.382e+01	0.0000	245.0	1.23%	357.5	0.82%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-5	-1.364e+01	0.0000	1929.0	9.64%	3697.1	8.49%
WRKY15(WRKY)/col-WRKY15-DAP-Seq(GSE60143)/Homer	VGTTGACTWW	1e-5	-1.357e+01	0.0000	1613.0	8.06%	3051.1	7.01%
WRKY31(WRKY)/colamp-WRKY31-DAP-Seq(GSE60143)/Homer	NCGTTGACTWWK	1e-5	-1.336e+01	0.0000	1203.0	6.02%	2223.7	5.11%
GBF6(bZIP)/colamp-GBF6-DAP-Seq(GSE60143)/Homer	WWTGMCACGTCABCW	1e-5	-1.334e+01	0.0000	365.0	1.82%	580.0	1.33%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-5	-1.327e+01	0.0000	1229.0	6.14%	2277.4	5.23%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e-5	-1.326e+01	0.0000	1157.0	5.79%	2132.5	4.90%
At5g65130(AP2EREBP)/colamp-At5g65130-DAP-Seq(GSE60143)/Homer	CCRCCGACAWTN	1e-5	-1.308e+01	0.0000	391.0	1.96%	631.7	1.45%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-5	-1.284e+01	0.0000	914.0	4.57%	1652.8	3.80%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-5	-1.283e+01	0.0000	6609.0	33.05%	13600.5	31.23%
EMB1789(C3H)/col-EMB1789-DAP-Seq(GSE60143)/Homer	TWTTTACCGYND	1e-5	-1.277e+01	0.0000	646.0	3.23%	1124.1	2.58%
GBF5(bZIP)/colamp-GBF5-DAP-Seq(GSE60143)/Homer	WKNWSACGTGGCAWN	1e-5	-1.270e+01	0.0000	499.0	2.50%	840.1	1.93%
bZIP44(bZIP)/colamp-bZIP44-DAP-Seq(GSE60143)/Homer	NDTGCCACGTCAGCH	1e-5	-1.267e+01	0.0000	67.0	0.34%	65.4	0.15%
HAT1(Homeobox)/col-HAT1-DAP-Seq(GSE60143)/Homer	SCAATCATTGNN	1e-5	-1.255e+01	0.0000	288.0	1.44%	444.3	1.02%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-5	-1.254e+01	0.0000	438.0	2.19%	726.0	1.67%
DREB19(AP2EREBP)/colamp-DREB19-DAP-Seq(GSE60143)/Homer	AATGTCGGTK	1e-5	-1.236e+01	0.0000	647.0	3.23%	1132.0	2.60%
bHLH74(bHLH)/col-bHLH74-DAP-Seq(GSE60143)/Homer	DRATCACGTGAB	1e-5	-1.230e+01	0.0000	490.0	2.45%	827.2	1.90%
WRKY33(WRKY)/col-WRKY33-DAP-Seq(GSE60143)/Homer	CGTTGACYAW	1e-5	-1.189e+01	0.0000	1293.0	6.46%	2431.2	5.58%
GBF3(bZIP)/Arabidopsis-GBF3-ChIP-Seq(GSE80564)/Homer	TGCCACGTSAYC	1e-5	-1.178e+01	0.0000	657.0	3.28%	1158.1	2.66%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e-4	-1.146e+01	0.0001	3104.0	15.52%	6196.4	14.23%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e-4	-1.142e+01	0.0001	728.0	3.64%	1303.5	2.99%
bHLH34(bHLH)/colamp-bHLH34-DAP-Seq(GSE60143)/Homer	HGWGRHWGACACGTG	1e-4	-1.132e+01	0.0001	487.0	2.44%	832.2	1.91%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-4	-1.130e+01	0.0001	543.0	2.71%	941.7	2.16%
WRKY75(WRKY)/col-WRKY75-DAP-Seq(GSE60143)/Homer	CGTTGACTWW	1e-4	-1.129e+01	0.0001	1551.0	7.75%	2970.7	6.82%
At1g36060(AP2EREBP)/colamp-At1g36060-DAP-Seq(GSE60143)/Homer	NNWWKGTCGGTG	1e-4	-1.127e+01	0.0001	826.0	4.13%	1500.7	3.45%
At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer	NWDTTGCGGCTR	1e-4	-1.110e+01	0.0001	599.0	3.00%	1053.7	2.42%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-4	-1.107e+01	0.0001	1034.0	5.17%	1921.8	4.41%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-4	-1.101e+01	0.0001	2274.0	11.37%	4472.2	10.27%
NLP7(RWPRK)/col-NLP7-DAP-Seq(GSE60143)/Homer	TGRCCYTTCR	1e-4	-1.101e+01	0.0001	3093.0	15.47%	6186.9	14.21%
ERF7(AP2EREBP)/col-ERF7-DAP-Seq(GSE60143)/Homer	ATGRCGGCGG	1e-4	-1.098e+01	0.0001	2241.0	11.21%	4404.7	10.11%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e-4	-1.095e+01	0.0001	5742.0	28.71%	11813.0	27.12%
ABF1(bZIP)/Arabidopsis-ABF1-ChIP-Seq(GSE80564)/Homer	CACGTGGC	1e-4	-1.094e+01	0.0001	1406.0	7.03%	2680.6	6.16%
AT4G18450(AP2EREBP)/col-AT4G18450-DAP-Seq(GSE60143)/Homer	ATGGCGGCKG	1e-4	-1.075e+01	0.0001	1007.0	5.04%	1872.7	4.30%
ERF5(AP2EREBP)/colamp-ERF5-DAP-Seq(GSE60143)/Homer	DCMGCCGCCA	1e-4	-1.071e+01	0.0001	1105.0	5.53%	2071.0	4.76%
ABR1(AP2EREBP)/colamp-ABR1-DAP-Seq(GSE60143)/Homer	AAATGGCGGCGG	1e-4	-1.065e+01	0.0001	1643.0	8.21%	3173.2	7.29%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.055e+01	0.0001	604.0	3.02%	1070.4	2.46%
ANAC057(NAC)/colamp-ANAC057-DAP-Seq(GSE60143)/Homer	DVCKTGNNNNNCAMG	1e-4	-1.053e+01	0.0001	888.0	4.44%	1636.8	3.76%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e-4	-1.048e+01	0.0001	362.0	1.81%	601.0	1.38%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-4	-1.040e+01	0.0001	188.0	0.94%	278.2	0.64%
ANAC094(NAC)/col-ANAC094-DAP-Seq(GSE60143)/Homer	DVCGTRNNNNNYACG	1e-4	-9.893e+00	0.0002	465.0	2.33%	806.4	1.85%
GATA1(C2C2gata)/colamp-GATA1-DAP-Seq(GSE60143)/Homer	DDWWYYAGATCTRRW	1e-4	-9.785e+00	0.0003	403.0	2.02%	687.8	1.58%
DREB26(AP2EREBP)/col-DREB26-DAP-Seq(GSE60143)/Homer	CCACCGACAH	1e-4	-9.774e+00	0.0003	311.0	1.55%	511.6	1.17%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-4	-9.773e+00	0.0003	992.0	4.96%	1859.1	4.27%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-4	-9.708e+00	0.0003	900.0	4.50%	1674.9	3.85%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-4	-9.530e+00	0.0003	1474.0	7.37%	2851.0	6.55%
O2(bZIP)/Corn-O2-ChIP-Seq(GSE63991)/Homer	GCTGACGTGGCA	1e-4	-9.493e+00	0.0003	227.0	1.14%	356.2	0.82%
M1BP(Zf)/S2R+-M1BP-ChIP-Seq(GSE49842)/Homer	CAGTGTGACCGT	1e-4	-9.425e+00	0.0004	337.0	1.69%	564.3	1.30%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-9.416e+00	0.0004	2254.0	11.27%	4473.9	10.27%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-4	-9.247e+00	0.0004	389.0	1.94%	666.5	1.53%
ATHB6(Homeobox)/Arabidopsis-HB6-ChIP-Seq(GSE80564)/Homer	CAATNATTBN	1e-4	-9.218e+00	0.0004	1184.0	5.92%	2261.4	5.19%
GATA4(C2C2gata)/col-GATA4-DAP-Seq(GSE60143)/Homer	DDWTYAGATCTR	1e-3	-9.110e+00	0.0005	827.0	4.13%	1537.6	3.53%
ATHB7(Homeobox)/col-ATHB7-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-3	-9.044e+00	0.0005	1128.0	5.64%	2150.7	4.94%
PHV(HB)/col-PHV-DAP-Seq(GSE60143)/Homer	RTAATSATTA	1e-3	-8.992e+00	0.0005	589.0	2.94%	1062.0	2.44%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e-3	-8.838e+00	0.0006	75.0	0.38%	91.1	0.21%
AGL63(MADS)/col-AGL63-DAP-Seq(GSE60143)/Homer	TTCCAAWWWTGG	1e-3	-8.818e+00	0.0006	1196.0	5.98%	2294.5	5.27%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-3	-8.740e+00	0.0007	222.0	1.11%	354.0	0.81%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-3	-8.699e+00	0.0007	1755.0	8.77%	3452.1	7.93%
RRTF1(AP2EREBP)/colamp-RRTF1-DAP-Seq(GSE60143)/Homer	CCGCCGCHATTT	1e-3	-8.626e+00	0.0007	344.0	1.72%	586.8	1.35%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-8.488e+00	0.0009	897.0	4.49%	1690.6	3.88%
bZIP69(bZIP)/col-bZIP69-DAP-Seq(GSE60143)/Homer	GACAGCTGKCAW	1e-3	-8.401e+00	0.0009	180.0	0.90%	278.2	0.64%
RAP26(AP2EREBP)/colamp-RAP26-DAP-Seq(GSE60143)/Homer	HDATGGCGGCGG	1e-3	-8.400e+00	0.0009	2112.0	10.56%	4205.6	9.66%
GTL1(Trihelix)/colamp-GTL1-DAP-Seq(GSE60143)/Homer	WWTTTACCKY	1e-3	-8.384e+00	0.0009	1836.0	9.18%	3629.7	8.33%
CRC(C2C2YABBY)/col-CRC-DAP-Seq(GSE60143)/Homer	TWATSATA	1e-3	-8.370e+00	0.0009	2059.0	10.29%	4095.8	9.40%
Knotted(Homeobox)/Corn-KN1-ChIP-Seq(GSE39161)/Homer	GAYGNGACRGGN	1e-3	-8.367e+00	0.0009	2155.0	10.78%	4297.0	9.87%
NAP(NAC)/col-NAP-DAP-Seq(GSE60143)/Homer	ARGTTACGTRTN	1e-3	-8.365e+00	0.0009	1181.0	5.91%	2273.2	5.22%
AT1G72740(MYBrelated)/colamp-AT1G72740-DAP-Seq(GSE60143)/Homer	NNWWAMCCTAAHWNN	1e-3	-8.338e+00	0.0010	1339.0	6.69%	2599.6	5.97%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-3	-8.204e+00	0.0011	552.0	2.76%	1001.0	2.30%
OBP3(C2C2dof)/col-OBP3-DAP-Seq(GSE60143)/Homer	NYWACTTTTT	1e-3	-8.196e+00	0.0011	5480.0	27.40%	11363.8	26.09%
MGP(C2H2)/colamp-MGP-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTW	1e-3	-8.067e+00	0.0012	368.0	1.84%	639.5	1.47%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e-3	-7.978e+00	0.0014	1460.0	7.30%	2858.1	6.56%
ABI5(bZIP)/col-ABI5-DAP-Seq(GSE60143)/Homer	GCCACGTG	1e-3	-7.877e+00	0.0015	615.0	3.08%	1131.1	2.60%
GATA11(C2C2gata)/col-GATA11-DAP-Seq(GSE60143)/Homer	DDHYYAGATCTR	1e-3	-7.876e+00	0.0015	466.0	2.33%	834.2	1.92%
ZML2(C2C2gata)/col-ZML2-DAP-Seq(GSE60143)/Homer	CATCATCATC	1e-3	-7.831e+00	0.0016	273.0	1.36%	458.8	1.05%
CAMTA5(CAMTA)/col-CAMTA5-DAP-Seq(GSE60143)/Homer	ACGCGTTTTANACRC	1e-3	-7.830e+00	0.0016	388.0	1.94%	681.6	1.57%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.746e+00	0.0017	1041.0	5.21%	1999.6	4.59%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e-3	-7.614e+00	0.0019	150.0	0.75%	229.2	0.53%
ERF11(AP2EREBP)/col-ERF11-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e-3	-7.469e+00	0.0022	1645.0	8.22%	3256.5	7.48%
ASHR1(ND)/col-ASHR1-DAP-Seq(GSE60143)/Homer	NTGGTGAN	1e-3	-7.317e+00	0.0025	1887.0	9.44%	3766.0	8.65%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e-3	-7.287e+00	0.0026	3006.0	15.03%	6125.6	14.07%
GATA12(C2C2gata)/col-GATA12-DAP-Seq(GSE60143)/Homer	YAGATCTRAW	1e-3	-7.234e+00	0.0027	634.0	3.17%	1180.2	2.71%
GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer	AYCAGATCTG	1e-3	-7.215e+00	0.0028	740.0	3.70%	1395.1	3.20%
ESE3(AP2EREBP)/col-ESE3-DAP-Seq(GSE60143)/Homer	GACGGTGG	1e-3	-7.215e+00	0.0028	2353.0	11.77%	4748.2	10.90%
WRKY11(WRKY)/col-WRKY11-DAP-Seq(GSE60143)/Homer	SCGTTGACTTTN	1e-3	-7.131e+00	0.0030	209.0	1.04%	343.8	0.79%
WRKY3(WRKY)/col-WRKY3-DAP-Seq(GSE60143)/Homer	NCKTTGACYDDN	1e-3	-7.115e+00	0.0030	1007.0	5.04%	1943.3	4.46%
AT1G28160(AP2EREBP)/colamp-AT1G28160-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e-3	-7.009e+00	0.0034	3567.0	17.84%	7327.9	16.83%
MYB98(MYB)/col-MYB98-DAP-Seq(GSE60143)/Homer	NWDCCGTTAC	1e-3	-6.926e+00	0.0036	437.0	2.19%	790.0	1.81%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-6.903e+00	0.0037	331.0	1.65%	581.6	1.34%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-2	-6.900e+00	0.0037	1529.0	7.65%	3030.9	6.96%
ERF8(AP2EREBP)/colamp-ERF8-DAP-Seq(GSE60143)/Homer	CGCCGYCATW	1e-2	-6.673e+00	0.0046	1828.0	9.14%	3662.8	8.41%
WRKY43(WRKY)/colamp-WRKY43-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTT	1e-2	-6.647e+00	0.0047	617.0	3.08%	1156.2	2.65%
AT3G52440(C2C2dof)/colamp-AT3G52440-DAP-Seq(GSE60143)/Homer	DTHACTTTTT	1e-2	-6.630e+00	0.0048	4140.0	20.70%	8565.4	19.67%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-2	-6.627e+00	0.0048	2703.0	13.51%	5508.8	12.65%
Adof1(C2C2dof)/col-Adof1-DAP-Seq(GSE60143)/Homer	NRWAAAGYDV	1e-2	-6.605e+00	0.0049	4833.0	24.16%	10049.4	23.08%
HSF6(HSF)/col-HSF6-DAP-Seq(GSE60143)/Homer	TTYTAGAAGCTTCTA	1e-2	-6.585e+00	0.0050	285.0	1.43%	496.0	1.14%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-2	-6.581e+00	0.0050	563.0	2.81%	1048.3	2.41%
CRF4(AP2EREBP)/colamp-CRF4-DAP-Seq(GSE60143)/Homer	CGCCGCCA	1e-2	-6.532e+00	0.0052	1297.0	6.49%	2557.8	5.87%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-6.517e+00	0.0052	1694.0	8.47%	3386.9	7.78%
WRKY18(WRKY)/col-WRKY18-DAP-Seq(GSE60143)/Homer	NNNTTGACYWNNNNN	1e-2	-6.497e+00	0.0053	2462.0	12.31%	5003.9	11.49%
WRKY55(WRKY)/col-WRKY55-DAP-Seq(GSE60143)/Homer	NCGTTGACTT	1e-2	-6.474e+00	0.0054	1805.0	9.03%	3620.3	8.31%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-6.399e+00	0.0058	3385.0	16.93%	6965.3	15.99%
ERF13(AP2EREBP)/colamp-ERF13-DAP-Seq(GSE60143)/Homer	TYAGCCGCCATT	1e-2	-6.398e+00	0.0058	1891.0	9.46%	3803.7	8.73%
ANAC053(NAC)/colamp-ANAC053-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e-2	-6.372e+00	0.0059	579.0	2.90%	1084.6	2.49%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-6.347e+00	0.0061	1195.0	5.97%	2350.2	5.40%
PUCHI(AP2EREBP)/colamp-PUCHI-DAP-Seq(GSE60143)/Homer	GCGCCGTY	1e-2	-6.287e+00	0.0064	1641.0	8.21%	3282.9	7.54%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-2	-6.187e+00	0.0071	190.0	0.95%	316.1	0.73%
ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer	WTKRCGGCGB	1e-2	-6.016e+00	0.0084	2657.0	13.29%	5434.8	12.48%
MYB118(MYB)/colamp-MYB118-DAP-Seq(GSE60143)/Homer	TAWCCGTTAC	1e-2	-6.005e+00	0.0084	428.0	2.14%	786.8	1.81%
WRKY20(WRKY)/col-WRKY20-DAP-Seq(GSE60143)/Homer	CKTTGACYWD	1e-2	-5.968e+00	0.0087	1169.0	5.85%	2306.5	5.30%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e-2	-5.955e+00	0.0088	145.0	0.73%	233.8	0.54%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e-2	-5.889e+00	0.0093	10863.0	54.32%	23138.1	53.13%
ANAC013(NAC)/col-ANAC013-DAP-Seq(GSE60143)/Homer	CTTGNNNNNCAAGNA	1e-2	-5.863e+00	0.0096	487.0	2.44%	907.7	2.08%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-5.818e+00	0.0100	213.0	1.06%	364.5	0.84%
WRKY14(WRKY)/colamp-WRKY14-DAP-Seq(GSE60143)/Homer	NCGTTGACTTTN	1e-2	-5.795e+00	0.0102	803.0	4.01%	1553.6	3.57%
AT4G12670(MYBrelated)/col-AT4G12670-DAP-Seq(GSE60143)/Homer	AGGGTTTAGGGTTTA	1e-2	-5.781e+00	0.0103	5.0	0.03%	0.8	0.00%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-5.726e+00	0.0108	608.0	3.04%	1155.5	2.65%
At1g22810(AP2EREBP)/colamp-At1g22810-DAP-Seq(GSE60143)/Homer	BCACCGACANNN	1e-2	-5.638e+00	0.0118	436.0	2.18%	808.6	1.86%
AT1G47655(C2C2dof)/colamp-AT1G47655-DAP-Seq(GSE60143)/Homer	YHACTTTTTS	1e-2	-5.604e+00	0.0121	6114.0	30.57%	12855.1	29.52%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e-2	-5.570e+00	0.0125	209.0	1.04%	359.7	0.83%
WRKY42(WRKY)/colamp-WRKY42-DAP-Seq(GSE60143)/Homer	NAAAGTCAACGN	1e-2	-5.418e+00	0.0145	555.0	2.77%	1053.6	2.42%
WRKY50(WRKY)/col-WRKY50-DAP-Seq(GSE60143)/Homer	NNTTGACTWNNGNNN	1e-2	-5.364e+00	0.0153	1486.0	7.43%	2986.7	6.86%
Replumless(BLH)/Arabidopsis-RPL.GFP-ChIP-Seq(GSE78727)/Homer	HGTCWHATCA	1e-2	-5.337e+00	0.0156	1587.0	7.94%	3199.3	7.35%
ATHB18(Homeobox)/colamp-ATHB18-DAP-Seq(GSE60143)/Homer	YCAATSATTG	1e-2	-5.307e+00	0.0160	302.0	1.51%	545.2	1.25%
HSF7(HSF)/colamp-HSF7-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-2	-5.254e+00	0.0168	221.0	1.10%	386.8	0.89%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-2	-5.172e+00	0.0182	19278.0	96.39%	41795.8	95.97%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.151e+00	0.0186	138.0	0.69%	227.1	0.52%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-5.091e+00	0.0196	985.0	4.92%	1947.8	4.47%
DEAR2(AP2EREBP)/colamp-DEAR2-DAP-Seq(GSE60143)/Homer	HCACCGACAWHD	1e-2	-5.086e+00	0.0197	1216.0	6.08%	2429.2	5.58%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-2	-5.070e+00	0.0199	2448.0	12.24%	5029.5	11.55%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e-2	-5.046e+00	0.0203	210.0	1.05%	367.1	0.84%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e-2	-4.885e+00	0.0238	99.0	0.50%	156.6	0.36%
VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer	TTTTTTTTTT	1e-2	-4.870e+00	0.0241	534.0	2.67%	1021.0	2.34%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-2	-4.781e+00	0.0262	258.0	1.29%	465.2	1.07%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-4.767e+00	0.0265	222.0	1.11%	394.9	0.91%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-4.743e+00	0.0270	867.0	4.33%	1711.4	3.93%
ATHB15(HB)/col-ATHB15-DAP-Seq(GSE60143)/Homer	GYAATSATTA	1e-2	-4.692e+00	0.0284	447.0	2.23%	847.7	1.95%
AT1G44830(AP2EREBP)/col-AT1G44830-DAP-Seq(GSE60143)/Homer	NCCACCGACA	1e-2	-4.688e+00	0.0284	374.0	1.87%	699.4	1.61%
SeqBias: CG-repeat	CGCGCGCGCG	1e-2	-4.682e+00	0.0285	4020.0	20.10%	8404.4	19.30%
TBP3(MYBrelated)/col-TBP3-DAP-Seq(GSE60143)/Homer	VYTAGGGCAN	1e-2	-4.666e+00	0.0288	1033.0	5.17%	2059.4	4.73%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-4.578e+00	0.0314	1472.0	7.36%	2983.2	6.85%
AT3G57600(AP2EREBP)/col-AT3G57600-DAP-Seq(GSE60143)/Homer	GGCGGTGG	1e-1	-4.552e+00	0.0321	1735.0	8.67%	3539.9	8.13%
AT3G25990(Trihelix)/colamp-AT3G25990-DAP-Seq(GSE60143)/Homer	TTAACCATAG	1e-1	-4.491e+00	0.0340	1031.0	5.16%	2060.0	4.73%
ATHB20(Homeobox)/colamp-ATHB20-DAP-Seq(GSE60143)/Homer	CAATHATT	1e-1	-4.476e+00	0.0344	633.0	3.16%	1234.0	2.83%
HSF3(HSF)/colamp-HSF3-DAP-Seq(GSE60143)/Homer	NTTCTAGAAKCTTCT	1e-1	-4.475e+00	0.0344	1037.0	5.18%	2073.6	4.76%
WRKY26(WRKY)/colamp-WRKY26-DAP-Seq(GSE60143)/Homer	CGTTGACTWDKN	1e-1	-4.401e+00	0.0368	802.0	4.01%	1585.3	3.64%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e-1	-4.392e+00	0.0370	1602.0	8.01%	3264.8	7.50%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e-1	-4.365e+00	0.0379	1672.0	8.36%	3413.0	7.84%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-4.314e+00	0.0398	679.0	3.40%	1332.8	3.06%
AT3G42860(zfGRF)/col-AT3G42860-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e-1	-4.300e+00	0.0402	378.0	1.89%	714.5	1.64%
AT3G10030(Trihelix)/colamp-AT3G10030-DAP-Seq(GSE60143)/Homer	GCCGTTAA	1e-1	-4.299e+00	0.0402	805.0	4.03%	1594.4	3.66%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-4.298e+00	0.0402	276.0	1.38%	508.7	1.17%
VND4(NAC)/colamp-VND4-DAP-Seq(GSE60143)/Homer	WRCTTGWANWWCAAG	1e-1	-4.293e+00	0.0402	778.0	3.89%	1538.9	3.53%
At1g19210(AP2EREBP)/colamp-At1g19210-DAP-Seq(GSE60143)/Homer	HCACCGACCAHN	1e-1	-4.216e+00	0.0432	1587.0	7.94%	3239.9	7.44%
MYB44(MYB)/colamp-MYB44-DAP-Seq(GSE60143)/Homer	CVGTTWWKTCNGTTA	1e-1	-4.214e+00	0.0432	128.0	0.64%	217.6	0.50%
ATHB5(HB)/colamp-ATHB5-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-4.208e+00	0.0433	1405.0	7.03%	2855.8	6.56%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-4.207e+00	0.0433	129.0	0.65%	219.7	0.50%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e-1	-4.123e+00	0.0468	34.0	0.17%	44.7	0.10%
SeqBias: polyA-repeat	AAAAAAAAAA	1e-1	-4.087e+00	0.0484	18606.0	93.03%	40308.2	92.56%
HSFC1(HSF)/col-HSFC1-DAP-Seq(GSE60143)/Homer	HTTCTAGAADCTTCT	1e-1	-4.070e+00	0.0490	184.0	0.92%	328.9	0.76%
At5g66730(C2H2)/colamp-At5g66730-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTK	1e-1	-4.069e+00	0.0490	419.0	2.10%	802.4	1.84%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-4.030e+00	0.0508	702.0	3.51%	1387.9	3.19%
ANAC004(NAC)/colamp-ANAC004-DAP-Seq(GSE60143)/Homer	WNCTTVYNNNRBAAG	1e-1	-4.029e+00	0.0508	423.0	2.11%	811.3	1.86%
AT2G28810(C2C2dof)/colamp-AT2G28810-DAP-Seq(GSE60143)/Homer	VAAAAAGTWA	1e-1	-3.998e+00	0.0521	4094.0	20.47%	8602.3	19.75%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e-1	-3.973e+00	0.0532	420.0	2.10%	807.0	1.85%
WRKY29(WRKY)/colamp-WRKY29-DAP-Seq(GSE60143)/Homer	MGTTGACTTT	1e-1	-3.906e+00	0.0567	1619.0	8.09%	3319.4	7.62%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-3.859e+00	0.0593	109.0	0.55%	184.1	0.42%
NTM1(NAC)/col-NTM1-DAP-Seq(GSE60143)/Homer	ACTTRTARAASAAGT	1e-1	-3.842e+00	0.0601	585.0	2.93%	1149.5	2.64%
SHN3(AP2EREBP)/col-SHN3-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e-1	-3.749e+00	0.0658	967.0	4.83%	1949.9	4.48%
AT1G04880(ARID)/colamp-AT1G04880-DAP-Seq(GSE60143)/Homer	AAACTATATADTATA	1e-1	-3.745e+00	0.0659	152.0	0.76%	270.0	0.62%
MYB41(MYB)/col-MYB41-DAP-Seq(GSE60143)/Homer	BYTYACCTAA	1e-1	-3.710e+00	0.0680	447.0	2.23%	868.0	1.99%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.709e+00	0.0680	974.0	4.87%	1965.5	4.51%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.703e+00	0.0681	1507.0	7.54%	3090.5	7.10%
MYB3(MYB)/Arabidopsis-MYB3-ChIP-Seq(GSE80564)/Homer	GKTAGGTRGG	1e-1	-3.696e+00	0.0683	2356.0	11.78%	4896.9	11.24%
CRF10(AP2EREBP)/col100-CRF10-DAP-Seq(GSE60143)/Homer	DCCGCCGYHA	1e-1	-3.681e+00	0.0691	2343.0	11.71%	4869.2	11.18%
ANAC062(NAC)/colamp-ANAC062-DAP-Seq(GSE60143)/Homer	TACTTANTNWNYAAG	1e-1	-3.676e+00	0.0693	434.0	2.17%	841.6	1.93%
ATHB6(Homeobox)/col-ATHB6-DAP-Seq(GSE60143)/Homer	AATGATTG	1e-1	-3.665e+00	0.0698	1877.0	9.38%	3877.6	8.90%
WRKY65(WRKY)/colamp-WRKY65-DAP-Seq(GSE60143)/Homer	AWWWAGTCAACG	1e-1	-3.663e+00	0.0698	737.0	3.69%	1470.7	3.38%
CBF2(AP2EREBP)/colamp-CBF2-DAP-Seq(GSE60143)/Homer	YBRCCGACATNNNNN	1e-1	-3.611e+00	0.0733	427.0	2.14%	828.1	1.90%
CUC2(NAC)/colamp-CUC2-DAP-Seq(GSE60143)/Homer	TRCKTGTNNNWCAMG	1e-1	-3.590e+00	0.0746	341.0	1.70%	652.2	1.50%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.584e+00	0.0748	2329.0	11.64%	4844.9	11.12%
SeqBias: G/A bias	RRRRRRRRRR	1e-1	-3.576e+00	0.0753	19987.0	99.94%	43498.2	99.88%
At4g31060(AP2EREBP)/colamp-At4g31060-DAP-Seq(GSE60143)/Homer	CACCGACAAW	1e-1	-3.567e+00	0.0757	353.0	1.76%	677.1	1.55%
AT1G10720(BSD)/col-AT1G10720-DAP-Seq(GSE60143)/Homer	TTCTAGAAKCTTCTA	1e-1	-3.566e+00	0.0757	26.0	0.13%	33.9	0.08%
DDF1(AP2EREBP)/col-DDF1-DAP-Seq(GSE60143)/Homer	GCCGACAT	1e-1	-3.501e+00	0.0804	403.0	2.02%	781.2	1.79%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-1	-3.476e+00	0.0822	1626.0	8.13%	3352.3	7.70%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-3.436e+00	0.0853	529.0	2.65%	1043.6	2.40%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-1	-3.411e+00	0.0872	1166.0	5.83%	2380.1	5.47%
WRKY27(WRKY)/colamp-WRKY27-DAP-Seq(GSE60143)/Homer	NHGTTGACYTWD	1e-1	-3.408e+00	0.0873	1397.0	6.98%	2869.8	6.59%
At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer	WTKGCGGCKR	1e-1	-3.323e+00	0.0946	2985.0	14.92%	6262.3	14.38%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-3.306e+00	0.0961	131.0	0.66%	233.6	0.54%
LBD2(LOBAS2)/colamp-LBD2-DAP-Seq(GSE60143)/Homer	TCCGAWTTTTTCGGN	1e-1	-3.269e+00	0.0994	351.0	1.75%	679.2	1.56%
AT5G63260(C3H)/col-AT5G63260-DAP-Seq(GSE60143)/Homer	RAAAAAGTRA	1e-1	-3.268e+00	0.0994	4148.0	20.74%	8765.0	20.13%
CUC1(NAC)/col-CUC1-DAP-Seq(GSE60143)/Homer	TACTTGTNNNACAAG	1e-1	-3.256e+00	0.1001	455.0	2.27%	894.3	2.05%
FRS9(ND)/col-FRS9-DAP-Seq(GSE60143)/Homer	RGAGAGAGAAAG	1e-1	-3.249e+00	0.1006	424.0	2.12%	830.4	1.91%
dof43(C2C2dof)/colamp-dof43-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e-1	-3.248e+00	0.1006	2540.0	12.70%	5313.9	12.20%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-1	-3.219e+00	0.1030	1119.0	5.59%	2288.1	5.25%
OBP4(C2C2dof)/col-OBP4-DAP-Seq(GSE60143)/Homer	WTTHACTTTTTB	1e-1	-3.211e+00	0.1035	2561.0	12.80%	5360.2	12.31%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e-1	-3.207e+00	0.1036	185.0	0.92%	342.0	0.79%
OBP1(C2C2dof)/col-OBP1-DAP-Seq(GSE60143)/Homer	NHHACTTTWT	1e-1	-3.205e+00	0.1036	4928.0	24.64%	10451.2	24.00%
BAM8(BES1)/col-BAM8-DAP-Seq(GSE60143)/Homer	NNWSACACGTGTSWN	1e-1	-3.204e+00	0.1036	180.0	0.90%	332.3	0.76%
PLT1(AP2EREBP)/colamp-PLT1-DAP-Seq(GSE60143)/Homer	GCACGAWTYCCGAGG	1e-1	-3.202e+00	0.1036	108.0	0.54%	189.4	0.43%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e-1	-3.159e+00	0.1075	123.0	0.61%	219.1	0.50%
ATHB13(Homeobox)/col-ATHB13-DAP-Seq(GSE60143)/Homer	CAATAATT	1e-1	-3.149e+00	0.1084	1620.0	8.10%	3354.9	7.70%
AT1G71450(AP2EREBP)/col-AT1G71450-DAP-Seq(GSE60143)/Homer	DHDWTGTCGGTG	1e-1	-3.140e+00	0.1091	2144.0	10.72%	4472.3	10.27%
AT1G76880(Trihelix)/col-AT1G76880-DAP-Seq(GSE60143)/Homer	ACGGTAAAAW	1e-1	-3.138e+00	0.1091	590.0	2.95%	1178.4	2.71%
ANAC045(NAC)/col-ANAC045-DAP-Seq(GSE60143)/Homer	DNCKTVNNNNNNAMG	1e-1	-3.129e+00	0.1097	2478.0	12.39%	5187.7	11.91%
NTM2(NAC)/col-NTM2-DAP-Seq(GSE60143)/Homer	CTTRTNNNAYAAGBH	1e-1	-3.090e+00	0.1137	608.0	3.04%	1217.9	2.80%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e-1	-3.084e+00	0.1141	6878.0	34.39%	14678.8	33.71%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e-1	-3.062e+00	0.1163	2890.0	14.45%	6074.1	13.95%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-1	-3.057e+00	0.1165	342.0	1.71%	665.1	1.53%
MYB83(MYB)/colamp-MYB83-DAP-Seq(GSE60143)/Homer	CACCAACCWH	1e-1	-3.051e+00	0.1170	2290.0	11.45%	4789.5	11.00%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-3.047e+00	0.1171	855.0	4.28%	1737.2	3.99%
TCP20(TCP)/col-TCP20-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e-1	-3.029e+00	0.1189	544.0	2.72%	1085.8	2.49%
At4g28140(AP2EREBP)/colamp-At4g28140-DAP-Seq(GSE60143)/Homer	DCCACCGACCAW	1e-1	-3.013e+00	0.1206	373.0	1.86%	730.7	1.68%
ATHB21(HB)/colamp-ATHB21-DAP-Seq(GSE60143)/Homer	YCAATWAT	1e-1	-2.973e+00	0.1251	676.0	3.38%	1363.3	3.13%
At1g76110(ARID)/colamp-At1g76110-DAP-Seq(GSE60143)/Homer	ATTTAATG	1e-1	-2.970e+00	0.1252	839.0	4.20%	1706.8	3.92%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.966e+00	0.1252	489.0	2.44%	972.5	2.23%
MYB57(MYB)/col-MYB57-DAP-Seq(GSE60143)/Homer	TTACCTAACT	1e-1	-2.953e+00	0.1266	597.0	2.99%	1198.7	2.75%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-2.874e+00	0.1366	3584.0	17.92%	7578.5	17.40%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e-1	-2.874e+00	0.1366	1348.0	6.74%	2789.0	6.40%
AT5G66940(C2C2dof)/col-AT5G66940-DAP-Seq(GSE60143)/Homer	NNHACTTTWT	1e-1	-2.845e+00	0.1400	3505.0	17.52%	7411.0	17.02%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-2.824e+00	0.1426	339.0	1.70%	664.1	1.52%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e-1	-2.794e+00	0.1465	1768.0	8.84%	3687.2	8.47%
AZF1(C2H2)/colamp-AZF1-DAP-Seq(GSE60143)/Homer	DKSWCACT	1e-1	-2.769e+00	0.1498	9014.0	45.07%	19343.8	44.42%
MYB119(MYB)/colamp-MYB119-DAP-Seq(GSE60143)/Homer	YRACCGTTACDD	1e-1	-2.750e+00	0.1523	396.0	1.98%	784.8	1.80%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.639e+00	0.1697	1664.0	8.32%	3473.1	7.97%
AT3G09735(S1Falike)/col-AT3G09735-DAP-Seq(GSE60143)/Homer	TTCTAGAANMTTCTA	1e-1	-2.620e+00	0.1726	404.0	2.02%	804.3	1.85%
AT3G12130(C3H)/colamp-AT3G12130-DAP-Seq(GSE60143)/Homer	TMACTTTTTV	1e-1	-2.614e+00	0.1731	4174.0	20.87%	8869.8	20.37%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-2.600e+00	0.1751	349.0	1.75%	690.5	1.59%
CEJ1(AP2EREBP)/col-CEJ1-DAP-Seq(GSE60143)/Homer	WWTGTCGGTG	1e-1	-2.598e+00	0.1751	1059.0	5.29%	2186.2	5.02%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e-1	-2.571e+00	0.1793	327.0	1.64%	645.7	1.48%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e-1	-2.571e+00	0.1793	1674.0	8.37%	3498.5	8.03%
VND6(NAC)/col-VND6-DAP-Seq(GSE60143)/Homer	DCTTNHTTTTYAMGY	1e-1	-2.567e+00	0.1793	1199.0	6.00%	2485.1	5.71%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.552e+00	0.1815	1271.0	6.35%	2639.5	6.06%
bZIP42(bZIP)/colamp-bZIP42-DAP-Seq(GSE60143)/Homer	GCCACGTCAGCA	1e-1	-2.546e+00	0.1820	9.0	0.04%	9.8	0.02%
AT2G31460(REMB3)/col-AT2G31460-DAP-Seq(GSE60143)/Homer	WNWARWDGAAATGAT	1e-1	-2.534e+00	0.1839	558.0	2.79%	1129.3	2.59%
GATA15(C2C2gata)/col-GATA15-DAP-Seq(GSE60143)/Homer	KATGATCA	1e-1	-2.519e+00	0.1861	1769.0	8.85%	3704.7	8.51%
WRKY47(WRKY)/colamp-WRKY47-DAP-Seq(GSE60143)/Homer	WAAGTCAACGBT	1e-1	-2.467e+00	0.1955	369.0	1.85%	735.4	1.69%
MYB107(MYB)/col-MYB107-DAP-Seq(GSE60143)/Homer	RGTWGGTRRR	1e-1	-2.442e+00	0.2000	2151.0	10.76%	4527.6	10.40%
At5g08520(MYBrelated)/colamp-At5g08520-DAP-Seq(GSE60143)/Homer	ADBSTTATCY	1e-1	-2.430e+00	0.2019	1938.0	9.69%	4071.0	9.35%
SRS7(SRS)/colamp-SRS7-DAP-Seq(GSE60143)/Homer	HATAGGTTTH	1e-1	-2.412e+00	0.2051	4372.0	21.86%	9313.1	21.38%
WRKY40(WRKY)/colamp-WRKY40-DAP-Seq(GSE60143)/Homer	AHWAGTCAAC	1e-1	-2.395e+00	0.2082	892.0	4.46%	1840.7	4.23%
AGL95(ND)/col-AGL95-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e-1	-2.394e+00	0.2082	95.0	0.47%	173.9	0.40%
AT4G00250(GeBP)/col-AT4G00250-DAP-Seq(GSE60143)/Homer	WDTGGATAAKRT	1e-1	-2.392e+00	0.2082	842.0	4.21%	1734.9	3.98%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e-1	-2.386e+00	0.2085	43.0	0.21%	71.1	0.16%
ASL18(LOBAS2)/colamp-ASL18-DAP-Seq(GSE60143)/Homer	CCGGAAAWTCMGGAR	1e-1	-2.314e+00	0.2233	2360.0	11.80%	4984.4	11.45%
REM16(ABI3VP1)/col-REM16-DAP-Seq(GSE60143)/Homer	DTTTTTSCCGSMAAA	1e-1	-2.312e+00	0.2233	2.0	0.01%	0.0	0.00%
HSFA6A(HSF)/col-HSFA6A-DAP-Seq(GSE60143)/Homer	RGAAGNTTCTAGAAN	1e-1	-2.308e+00	0.2236	30.0	0.15%	47.2	0.11%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-2.295e+00	0.2261	195.0	0.97%	378.0	0.87%
STZ(C2H2)/colamp-STZ-DAP-Seq(GSE60143)/Homer	HNBTCACT	1e0	-2.294e+00	0.2261	9989.0	49.95%	21512.6	49.40%
AT2G38300(G2like)/col-AT2G38300-DAP-Seq(GSE60143)/Homer	ADRGAATGTT	1e0	-2.286e+00	0.2269	2206.0	11.03%	4655.5	10.69%
WRKY30(WRKY)/colamp-WRKY30-DAP-Seq(GSE60143)/Homer	CGTTGACTTN	1e0	-2.278e+00	0.2283	379.0	1.90%	761.9	1.75%
ATHB23(ZFHD)/col-ATHB23-DAP-Seq(GSE60143)/Homer	HTAATTARNN	1e0	-2.193e+00	0.2478	1338.0	6.69%	2800.1	6.43%
dof24(C2C2dof)/col-dof24-DAP-Seq(GSE60143)/Homer	TWMCTTTTTG	1e0	-2.192e+00	0.2478	3376.0	16.88%	7181.0	16.49%
RKD2(RWPRK)/colamp-RKD2-DAP-Seq(GSE60143)/Homer	GACKTTTCRDCTTCC	1e0	-2.179e+00	0.2502	937.0	4.69%	1945.8	4.47%
At2g03500(G2like)/col-At2g03500-DAP-Seq(GSE60143)/Homer	WWAGAATATTCT	1e0	-2.172e+00	0.2514	257.0	1.29%	510.0	1.17%
BBX31(Orphan)/col-BBX31-DAP-Seq(GSE60143)/Homer	NAAAAAGTDA	1e0	-2.124e+00	0.2631	2706.0	13.53%	5742.7	13.19%
ATHB34(ZFHD)/colamp-ATHB34-DAP-Seq(GSE60143)/Homer	TRATTARS	1e0	-2.106e+00	0.2671	1181.0	5.91%	2469.1	5.67%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-2.084e+00	0.2724	522.0	2.61%	1068.1	2.45%
ANAC050(NAC)/colamp-ANAC050-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAAG	1e0	-2.082e+00	0.2724	582.0	2.91%	1195.7	2.75%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-2.082e+00	0.2724	2154.0	10.77%	4558.0	10.47%
AGL13(MADS)/col-AGL13-DAP-Seq(GSE60143)/Homer	TWCCAWWTWTGGWAA	1e0	-2.080e+00	0.2724	77.0	0.39%	141.6	0.33%
MYB27(MYB)/colamp-MYB27-DAP-Seq(GSE60143)/Homer	TACCTAACWT	1e0	-2.073e+00	0.2728	188.0	0.94%	368.6	0.85%
CAMTA1(CAMTA)/col-CAMTA1-DAP-Seq(GSE60143)/Homer	WWAACGCGTT	1e0	-2.032e+00	0.2838	583.0	2.92%	1199.3	2.75%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-2.024e+00	0.2853	4338.0	21.69%	9274.3	21.30%
ANAC087(NAC)/col-ANAC087-DAP-Seq(GSE60143)/Homer	WVCKTGHNNNWCAMG	1e0	-2.017e+00	0.2865	314.0	1.57%	632.2	1.45%
WRKY21(WRKY)/colamp-WRKY21-DAP-Seq(GSE60143)/Homer	DCGTTGACTTTT	1e0	-2.009e+00	0.2883	153.0	0.77%	297.4	0.68%
ANAC103(NAC)/col-ANAC103-DAP-Seq(GSE60143)/Homer	AACTTGNWNWNCAAG	1e0	-1.996e+00	0.2914	396.0	1.98%	805.6	1.85%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	-1.995e+00	0.2914	970.0	4.85%	2024.4	4.65%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-1.994e+00	0.2914	1007.0	5.04%	2103.6	4.83%
ANAC038(NAC)/col-ANAC038-DAP-Seq(GSE60143)/Homer	ACACGTWAYC	1e0	-1.979e+00	0.2943	2935.0	14.67%	6247.4	14.35%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	-1.956e+00	0.3004	243.0	1.21%	485.4	1.11%
At5g22890(C2H2)/col-At5g22890-DAP-Seq(GSE60143)/Homer	NSAGGTKWTATCTGD	1e0	-1.952e+00	0.3011	40.0	0.20%	69.8	0.16%
CBF3(AP2EREBP)/colamp-CBF3-DAP-Seq(GSE60143)/Homer	YNRCCGACATNN	1e0	-1.930e+00	0.3070	449.0	2.25%	919.7	2.11%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-1.894e+00	0.3175	605.0	3.02%	1251.9	2.87%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.881e+00	0.3209	199.0	1.00%	395.4	0.91%
PIF7(bHLH)/col-PIF7-DAP-Seq(GSE60143)/Homer	CCACGTGGNH	1e0	-1.811e+00	0.3432	334.0	1.67%	680.6	1.56%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-1.806e+00	0.3442	1795.0	8.97%	3804.5	8.74%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.805e+00	0.3442	245.0	1.23%	493.1	1.13%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-1.802e+00	0.3442	900.0	4.50%	1884.1	4.33%
ANAC092(NAC)/colamp-ANAC092-DAP-Seq(GSE60143)/Homer	WRCKTGWNNNWCAMG	1e0	-1.800e+00	0.3442	402.0	2.01%	824.6	1.89%
At1g74840(MYBrelated)/col100-At1g74840-DAP-Seq(GSE60143)/Homer	YHTTATCCAWWT	1e0	-1.792e+00	0.3462	1082.0	5.41%	2274.5	5.22%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e0	-1.791e+00	0.3462	467.0	2.33%	962.4	2.21%
At1g77640(AP2EREBP)/col-At1g77640-DAP-Seq(GSE60143)/Homer	TGTCGGTGGA	1e0	-1.785e+00	0.3469	185.0	0.92%	368.0	0.85%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.785e+00	0.3469	78.0	0.39%	147.6	0.34%
MYB17(MYB)/colamp-MYB17-DAP-Seq(GSE60143)/Homer	GGTAGGTGRG	1e0	-1.784e+00	0.3469	686.0	3.43%	1428.9	3.28%
MYB96(MYB)/colamp-MYB96-DAP-Seq(GSE60143)/Homer	WGGTRGTTGG	1e0	-1.773e+00	0.3487	1228.0	6.14%	2588.8	5.94%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.748e+00	0.3567	511.0	2.56%	1057.4	2.43%
VIP1(bZIP)/col-VIP1-DAP-Seq(GSE60143)/Homer	NTTGACAGCTGTCAN	1e0	-1.729e+00	0.3627	235.0	1.18%	474.9	1.09%
bHLH157(bHLH)/col-bHLH157-DAP-Seq(GSE60143)/Homer	KACACGTCTCTY	1e0	-1.722e+00	0.3646	272.0	1.36%	552.7	1.27%
AT5G61620(MYBrelated)/colamp-AT5G61620-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.680e+00	0.3793	2188.0	10.94%	4660.8	10.70%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e0	-1.674e+00	0.3808	1296.0	6.48%	2740.7	6.29%
CDF3(C2C2dof)/colamp-CDF3-DAP-Seq(GSE60143)/Homer	AAAAGTRM	1e0	-1.643e+00	0.3919	3015.0	15.07%	6449.6	14.81%
At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer	WTTYTACT	1e0	-1.623e+00	0.3990	9003.0	45.02%	19445.9	44.65%
AS2(LOBAS2)/col-AS2-DAP-Seq(GSE60143)/Homer	CCGDAAWWHMCGSCG	1e0	-1.608e+00	0.4040	173.0	0.86%	347.3	0.80%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.607e+00	0.4040	64.0	0.32%	121.0	0.28%
TF3A(C2H2)/col-TF3A-DAP-Seq(GSE60143)/Homer	NNDDGAGGAGGWNNN	1e0	-1.590e+00	0.4096	2224.0	11.12%	4745.2	10.90%
CCA(Myb)/Arabidopsis-CCA.GFP-ChIP-Seq(GSE70533)/Homer	AGATATYTTT	1e0	-1.588e+00	0.4096	1016.0	5.08%	2144.6	4.92%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.571e+00	0.4158	3298.0	16.49%	7068.2	16.23%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.560e+00	0.4192	44.0	0.22%	81.4	0.19%
CUC3(NAC)/col-CUC3-DAP-Seq(GSE60143)/Homer	TRCKTGWNNNACAMG	1e0	-1.539e+00	0.4273	336.0	1.68%	693.2	1.59%
ERF1(AP2EREBP)/colamp-ERF1-DAP-Seq(GSE60143)/Homer	GGCGGCTR	1e0	-1.537e+00	0.4273	1435.0	7.17%	3048.0	7.00%
MYB81(MYB)/col-MYB81-DAP-Seq(GSE60143)/Homer	NWAACSGWTWNN	1e0	-1.532e+00	0.4283	2325.0	11.62%	4968.6	11.41%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.528e+00	0.4293	658.0	3.29%	1380.7	3.17%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.526e+00	0.4293	693.0	3.46%	1455.1	3.34%
NAC2(NAC)/colamp-NAC2-DAP-Seq(GSE60143)/Homer	TDCTTGNNNNNCAAG	1e0	-1.497e+00	0.4410	697.0	3.48%	1465.6	3.37%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	-1.493e+00	0.4417	1139.0	5.70%	2414.7	5.54%
At3g45610(C2C2dof)/col-At3g45610-DAP-Seq(GSE60143)/Homer	TWACTTTTTS	1e0	-1.473e+00	0.4496	2676.0	13.38%	5732.7	13.16%
ANAC005(NAC)/col-ANAC005-DAP-Seq(GSE60143)/Homer	WVCTTVTWNHABAAG	1e0	-1.423e+00	0.4718	558.0	2.79%	1172.0	2.69%
SND3(NAC)/col-SND3-DAP-Seq(GSE60143)/Homer	CTTNHNNNDNAAGNH	1e0	-1.410e+00	0.4767	756.0	3.78%	1596.4	3.67%
ANAC011(NAC)/col-ANAC011-DAP-Seq(GSE60143)/Homer	TDCTTGYRNNDCAAG	1e0	-1.393e+00	0.4843	350.0	1.75%	728.6	1.67%
HuR(?)/HEK293-HuR-CLIP-Seq(GSE87887)/Homer	BTTTGGTTTG	1e0	-1.389e+00	0.4852	6294.0	31.47%	13587.0	31.20%
VND2(NAC)/col-VND2-DAP-Seq(GSE60143)/Homer	DNCKTNNNNNNNAAG	1e0	-1.381e+00	0.4877	1006.0	5.03%	2135.1	4.90%
ERF105(AP2EREBP)/colamp-ERF105-DAP-Seq(GSE60143)/Homer	TGGCGGCT	1e0	-1.372e+00	0.4913	2567.0	12.83%	5506.5	12.64%
ERF104(AP2EREBP)/col-ERF104-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-1.366e+00	0.4930	2072.0	10.36%	4436.3	10.19%
STOP1(C2H2)/colamp-STOP1-DAP-Seq(GSE60143)/Homer	DTATCTGGKGRAGGT	1e0	-1.357e+00	0.4967	529.0	2.65%	1112.5	2.55%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-1.352e+00	0.4982	245.0	1.23%	506.1	1.16%
At5g47390(MYBrelated)/col-At5g47390-DAP-Seq(GSE60143)/Homer	CTTATCCA	1e0	-1.330e+00	0.5082	1959.0	9.79%	4195.6	9.63%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-1.320e+00	0.5120	849.0	4.25%	1801.8	4.14%
RVE1(MYBrelated)/col-RVE1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.290e+00	0.5266	691.0	3.45%	1463.9	3.36%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.245e+00	0.5499	2314.0	11.57%	4971.8	11.42%
ERF10(AP2EREBP)/col-ERF10-DAP-Seq(GSE60143)/Homer	RTGGCGGCGG	1e0	-1.235e+00	0.5543	1312.0	6.56%	2805.3	6.44%
SND2(NAC)/colamp-SND2-DAP-Seq(GSE60143)/Homer	CTTVWNNNWBAAGNW	1e0	-1.229e+00	0.5560	555.0	2.77%	1174.2	2.70%
RAV1(RAV)/colamp-RAV1-DAP-Seq(GSE60143)/Homer	TWWTTTCTGTTG	1e0	-1.228e+00	0.5560	1063.0	5.32%	2269.0	5.21%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.188e+00	0.5770	419.0	2.10%	884.5	2.03%
At1g19000(MYBrelated)/colamp-At1g19000-DAP-Seq(GSE60143)/Homer	WWTGGATAADDT	1e0	-1.186e+00	0.5770	1251.0	6.25%	2677.1	6.15%
JGL(C2H2)/col-JGL-DAP-Seq(GSE60143)/Homer	ACYTTCAGTT	1e0	-1.176e+00	0.5818	2572.0	12.86%	5537.9	12.72%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.168e+00	0.5852	43.0	0.21%	84.8	0.19%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.148e+00	0.5958	2970.0	14.85%	6403.2	14.70%
ANAC016(NAC)/col-ANAC016-DAP-Seq(GSE60143)/Homer	WNCTTGNNNNNCAMG	1e0	-1.122e+00	0.6104	839.0	4.20%	1792.6	4.12%
ATHB24(ZFHD)/colamp-ATHB24-DAP-Seq(GSE60143)/Homer	TAATTAAS	1e0	-1.103e+00	0.6208	1062.0	5.31%	2275.1	5.22%
ANAC028(NAC)/col-ANAC028-DAP-Seq(GSE60143)/Homer	WRCTTGNNNNNCAAG	1e0	-1.092e+00	0.6261	751.0	3.75%	1604.1	3.68%
DAG2(C2C2dof)/col-DAG2-DAP-Seq(GSE60143)/Homer	WWTTHACTTTTT	1e0	-1.090e+00	0.6262	2947.0	14.74%	6360.0	14.60%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-1.075e+00	0.6344	39.0	0.19%	77.5	0.18%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	-1.072e+00	0.6348	1244.0	6.22%	2671.5	6.13%
ARF16(ARF)/col-ARF16-DAP-Seq(GSE60143)/Homer	ATTTTACGAT	1e0	-1.068e+00	0.6363	139.0	0.69%	289.2	0.66%
ATHB25(ZFHD)/colamp-ATHB25-DAP-Seq(GSE60143)/Homer	TAATTAVB	1e0	-1.058e+00	0.6414	1684.0	8.42%	3625.1	8.32%
At4g01280(MYBrelated)/colamp-At4g01280-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-1.049e+00	0.6462	683.0	3.42%	1460.3	3.35%
AT2G28920(ND)/col-AT2G28920-DAP-Seq(GSE60143)/Homer	WAGATATTTWTW	1e0	-1.046e+00	0.6466	355.0	1.77%	753.1	1.73%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.019e+00	0.6629	114.0	0.57%	237.7	0.55%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e0	-1.004e+00	0.6716	2115.0	10.57%	4565.3	10.48%
MS188(MYB)/colamp-MS188-DAP-Seq(GSE60143)/Homer	WARKTAGGTRRA	1e0	-9.933e-01	0.6775	931.0	4.66%	2000.9	4.59%
MYB121(MYB)/col-MYB121-DAP-Seq(GSE60143)/Homer	YNTACCTAACWW	1e0	-9.730e-01	0.6900	365.0	1.82%	778.5	1.79%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	-9.663e-01	0.6933	1541.0	7.70%	3324.4	7.63%
AT1G23810(Orphan)/col-AT1G23810-DAP-Seq(GSE60143)/Homer	TTCTAGAAGSTTCTA	1e0	-9.576e-01	0.6980	32.0	0.16%	64.8	0.15%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-9.506e-01	0.7015	3.0	0.01%	4.4	0.01%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-9.413e-01	0.7067	1402.0	7.01%	3026.0	6.95%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	-9.322e-01	0.7117	179.0	0.90%	379.4	0.87%
GATA20(C2C2gata)/colamp-GATA20-DAP-Seq(GSE60143)/Homer	TNGATCNDNM	1e0	-9.279e-01	0.7134	2426.0	12.13%	5249.5	12.05%
JKD(C2H2)/col-JKD-DAP-Seq(GSE60143)/Homer	TTTTGTCGTTTT	1e0	-9.261e-01	0.7134	249.0	1.24%	530.1	1.22%
AtIDD11(C2H2)/colamp-AtIDD11-DAP-Seq(GSE60143)/Homer	TTTGTCGTTT	1e0	-9.044e-01	0.7275	528.0	2.64%	1134.8	2.61%
AT3G10580(MYBrelated)/colamp-AT3G10580-DAP-Seq(GSE60143)/Homer	TACCTAACWNHW	1e0	-8.949e-01	0.7330	433.0	2.17%	929.3	2.13%
MYB65(MYB)/colamp-MYB65-DAP-Seq(GSE60143)/Homer	RACNGTTA	1e0	-8.945e-01	0.7330	1674.0	8.37%	3620.9	8.31%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-8.915e-01	0.7330	321.0	1.60%	688.0	1.58%
EPR1(MYBrelated)/colamp-EPR1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.898e-01	0.7330	480.0	2.40%	1031.6	2.37%
LHY1(MYBrelated)/col-LHY1-DAP-Seq(GSE60143)/Homer	AAATATCT	1e0	-8.898e-01	0.7330	480.0	2.40%	1031.6	2.37%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-8.883e-01	0.7330	264.0	1.32%	564.8	1.30%
At4g36780(BZR)/col-At4g36780-DAP-Seq(GSE60143)/Homer	NNNNNNCACGTGNNN	1e0	-8.763e-01	0.7382	390.0	1.95%	837.9	1.92%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-8.693e-01	0.7420	14510.0	72.55%	31560.8	72.47%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.644e-01	0.7442	716.0	3.58%	1544.3	3.55%
bHLH10(bHLH)/colamp-bHLH10-DAP-Seq(GSE60143)/Homer	YACCGACA	1e0	-8.638e-01	0.7442	251.0	1.26%	537.7	1.23%
MYB49(MYB)/col-MYB49-DAP-Seq(GSE60143)/Homer	ARKTAGGTRR	1e0	-8.463e-01	0.7548	1242.0	6.21%	2687.6	6.17%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-8.438e-01	0.7553	819.0	4.09%	1769.6	4.06%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-8.412e-01	0.7558	10.0	0.05%	19.2	0.04%
At5g29000(G2like)/col-At5g29000-DAP-Seq(GSE60143)/Homer	RGAATATTCYHH	1e0	-8.396e-01	0.7558	281.0	1.41%	603.8	1.39%
AT5G59990(C2C2COlike)/colamp-AT5G59990-DAP-Seq(GSE60143)/Homer	TCTCAACCGTTCATT	1e0	-8.373e-01	0.7559	26.0	0.13%	53.5	0.12%
ANAC047(NAC)/colamp-ANAC047-DAP-Seq(GSE60143)/Homer	WACACGTAACTT	1e0	-8.357e-01	0.7559	774.0	3.87%	1672.7	3.84%
DREB2(AP2EREBP)/col-DREB2-DAP-Seq(GSE60143)/Homer	TMACCGACATWA	1e0	-8.343e-01	0.7559	412.0	2.06%	887.7	2.04%
AT4G26030(C2H2)/col-AT4G26030-DAP-Seq(GSE60143)/Homer	BYYACCWACY	1e0	-8.275e-01	0.7590	1144.0	5.72%	2476.3	5.69%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-8.262e-01	0.7590	161.0	0.80%	344.7	0.79%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.223e-01	0.7601	384.0	1.92%	827.6	1.90%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-8.128e-01	0.7660	225.0	1.12%	483.5	1.11%
AT3G10113(MYBrelated)/col-AT3G10113-DAP-Seq(GSE60143)/Homer	WNAAATATCWWN	1e0	-8.025e-01	0.7724	554.0	2.77%	1197.7	2.75%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.979e-01	0.7745	22.0	0.11%	45.1	0.10%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-7.939e-01	0.7762	80.0	0.40%	170.2	0.39%
ANAC020(NAC)/col-ANAC020-DAP-Seq(GSE60143)/Homer	DVCKTGHNNNDCAAG	1e0	-7.859e-01	0.7810	623.0	3.12%	1348.9	3.10%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-7.536e-01	0.8051	186.0	0.93%	401.2	0.92%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-7.452e-01	0.8104	143.0	0.71%	308.4	0.71%
WRKY46(WRKY)/colamp-WRKY46-DAP-Seq(GSE60143)/Homer	AAAGTCAACGSN	1e0	-7.446e-01	0.8104	78.0	0.39%	167.6	0.38%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-7.247e-01	0.8241	391.0	1.96%	848.6	1.95%
MYB94(MYB)/col-MYB94-DAP-Seq(GSE60143)/Homer	WGGTRGTTGGKA	1e0	-7.235e-01	0.8241	499.0	2.50%	1083.7	2.49%
TINY(AP2EREBP)/col-TINY-DAP-Seq(GSE60143)/Homer	NNCACCGACA	1e0	-7.126e-01	0.8311	233.0	1.17%	505.9	1.16%
dof42(C2C2dof)/col-dof42-DAP-Seq(GSE60143)/Homer	AAAAAGGC	1e0	-7.085e-01	0.8330	946.0	4.73%	2057.7	4.72%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-7.044e-01	0.8349	463.0	2.31%	1006.7	2.31%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-6.992e-01	0.8377	1161.0	5.80%	2526.6	5.80%
MYB55(MYB)/colamp-MYB55-DAP-Seq(GSE60143)/Homer	YACCWAMC	1e0	-6.968e-01	0.8382	1261.0	6.30%	2744.9	6.30%
MYB4(MYB)/col200-MYB4-DAP-Seq(GSE60143)/Homer	WAGKTAGGTARR	1e0	-6.957e-01	0.8382	657.0	3.28%	1430.0	3.28%
WRKY8(WRKY)/colamp-WRKY8-DAP-Seq(GSE60143)/Homer	CGTTGACTTT	1e0	-6.847e-01	0.8453	186.0	0.93%	404.1	0.93%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-6.766e-01	0.8506	1950.0	9.75%	4247.2	9.75%
ANAC075(NAC)/col-ANAC075-DAP-Seq(GSE60143)/Homer	CTTSWWNWWSAAGYT	1e0	-6.752e-01	0.8506	323.0	1.62%	703.0	1.61%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-6.634e-01	0.8588	458.0	2.29%	998.5	2.29%
At5g05790(MYBrelated)/col-At5g05790-DAP-Seq(GSE60143)/Homer	AYCTTATC	1e0	-6.600e-01	0.8602	1808.0	9.04%	3940.2	9.05%
AT2G33550(Trihelix)/colamp-AT2G33550-DAP-Seq(GSE60143)/Homer	TTTAAGGGCAYTTTT	1e0	-6.555e-01	0.8625	3020.0	15.10%	6581.8	15.11%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-6.539e-01	0.8625	1507.0	7.54%	3285.8	7.54%
MYB30(MYB)/colamp-MYB30-DAP-Seq(GSE60143)/Homer	AGGTAGTTGG	1e0	-6.487e-01	0.8653	1414.0	7.07%	3083.4	7.08%
LBD19(LOBAS2)/colamp-LBD19-DAP-Seq(GSE60143)/Homer	CCKGAAWTTCMGGAW	1e0	-6.405e-01	0.8708	2474.0	12.37%	5394.8	12.39%
ANAC096(NAC)/colamp-ANAC096-DAP-Seq(GSE60143)/Homer	TACTTGWNNNWCAAG	1e0	-6.391e-01	0.8708	669.0	3.35%	1460.9	3.35%
MYB77(MYB)/col-MYB77-DAP-Seq(GSE60143)/Homer	NYAACBGYMC	1e0	-6.245e-01	0.8817	1858.0	9.29%	4054.4	9.31%
VND3(NAC)/colamp-VND3-DAP-Seq(GSE60143)/Homer	TRCTTGWDNHWCAAG	1e0	-6.219e-01	0.8824	699.0	3.50%	1527.9	3.51%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-6.176e-01	0.8847	1758.0	8.79%	3837.9	8.81%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	-6.161e-01	0.8847	287.0	1.44%	628.0	1.44%
CBF1(AP2EREBP)/colamp-CBF1-DAP-Seq(GSE60143)/Homer	YRCCGACATN	1e0	-6.100e-01	0.8883	671.0	3.36%	1467.4	3.37%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e0	-6.097e-01	0.8883	1403.0	7.02%	3064.4	7.04%
MYB93(MYB)/colamp-MYB93-DAP-Seq(GSE60143)/Homer	GGTAGGTGRD	1e0	-6.025e-01	0.8918	1464.0	7.32%	3198.0	7.34%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-5.886e-01	0.9026	100.0	0.50%	220.1	0.51%
dof45(C2C2dof)/col-dof45-DAP-Seq(GSE60143)/Homer	NVAWAAAGTN	1e0	-5.877e-01	0.9026	4327.0	21.63%	9442.7	21.68%
LMI1(HB)/colamp-LMI1-DAP-Seq(GSE60143)/Homer	AATTATTG	1e0	-5.838e-01	0.9039	946.0	4.73%	2070.1	4.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.789e-01	0.9067	769.0	3.84%	1684.5	3.87%
IDD7(C2H2)/col-IDD7-DAP-Seq(GSE60143)/Homer	TTTGTCKTTTTN	1e0	-5.748e-01	0.9088	540.0	2.70%	1184.4	2.72%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-5.700e-01	0.9115	137.0	0.69%	302.3	0.69%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-5.696e-01	0.9115	699.0	3.50%	1532.0	3.52%
AT4G27900(C2C2COlike)/col-AT4G27900-DAP-Seq(GSE60143)/Homer	TCTCVACCGTTSATT	1e0	-5.695e-01	0.9115	7.0	0.03%	15.1	0.03%
At3g11280(MYBrelated)/col-At3g11280-DAP-Seq(GSE60143)/Homer	GATAAGRT	1e0	-5.694e-01	0.9115	1708.0	8.54%	3735.5	8.58%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.674e-01	0.9115	96.0	0.48%	212.3	0.49%
RAP211(AP2EREBP)/colamp-RAP211-DAP-Seq(GSE60143)/Homer	RGCCGGCYWW	1e0	-5.634e-01	0.9115	3514.0	17.57%	7675.2	17.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.565e-01	0.9144	805.0	4.03%	1765.5	4.05%
ERF15(AP2EREBP)/colamp-ERF15-DAP-Seq(GSE60143)/Homer	WDHAGCMGCCAT	1e0	-5.500e-01	0.9187	3543.0	17.71%	7741.5	17.78%
AGL6(MADS)/col-AGL6-DAP-Seq(GSE60143)/Homer	TTWCCWWAWWDGGWA	1e0	-5.471e-01	0.9198	162.0	0.81%	358.7	0.82%
MYB70(MYB)/col-MYB70-DAP-Seq(GSE60143)/Homer	WTAACNGTTA	1e0	-5.324e-01	0.9318	2311.0	11.55%	5057.6	11.61%
AGL15(MADS)/col-AGL15-DAP-Seq(GSE60143)/Homer	TTTCCHWATWDGGAA	1e0	-5.307e-01	0.9318	193.0	0.97%	427.1	0.98%
SMB(NAC)/colamp-SMB-DAP-Seq(GSE60143)/Homer	CTTVNNNNDBAAGHW	1e0	-5.290e-01	0.9318	971.0	4.86%	2131.6	4.89%
CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer	NRCCGACDWNNNNNN	1e0	-5.202e-01	0.9384	609.0	3.04%	1340.6	3.08%
DDF2(AP2EREBP)/col-DDF2-DAP-Seq(GSE60143)/Homer	GATGTCGRCR	1e0	-5.197e-01	0.9384	20.0	0.10%	45.9	0.11%
MYB13(MYB)/col-MYB13-DAP-Seq(GSE60143)/Homer	HYCACCWACCHH	1e0	-5.180e-01	0.9384	841.0	4.21%	1848.7	4.24%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-5.095e-01	0.9436	1065.0	5.33%	2339.3	5.37%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-5.093e-01	0.9436	109.0	0.55%	243.9	0.56%
AIL7(AP2EREBP)/colamp-AIL7-DAP-Seq(GSE60143)/Homer	KCACRAWTYYCGAGG	1e0	-5.003e-01	0.9492	510.0	2.55%	1125.8	2.59%
NUC(C2H2)/col-NUC-DAP-Seq(GSE60143)/Homer	HAVAAAACGACAAAA	1e0	-4.982e-01	0.9495	102.0	0.51%	228.1	0.52%
At5g04390(C2H2)/col200-At5g04390-DAP-Seq(GSE60143)/Homer	AGTGANDN	1e0	-4.974e-01	0.9495	9592.0	47.96%	20936.2	48.07%
MYB74(MYB)/colamp-MYB74-DAP-Seq(GSE60143)/Homer	YYYACCTACCWH	1e0	-4.925e-01	0.9518	678.0	3.39%	1494.4	3.43%
BPC6(BBRBPC)/col-BPC6-DAP-Seq(GSE60143)/Homer	YTYTCTCTCTCTCTA	1e0	-4.899e-01	0.9526	55.0	0.27%	124.9	0.29%
ATHB40(HB)/col-ATHB40-DAP-Seq(GSE60143)/Homer	HCAATWATTG	1e0	-4.744e-01	0.9658	1056.0	5.28%	2324.9	5.34%
ERF2(AP2EREBP)/colamp-ERF2-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-4.716e-01	0.9670	1581.0	7.90%	3473.8	7.98%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.630e-01	0.9736	441.0	2.21%	977.4	2.24%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-4.617e-01	0.9736	395.0	1.98%	876.3	2.01%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.603e-01	0.9736	1427.0	7.13%	3138.8	7.21%
SPL11(SBP)/col100-SPL11-DAP-Seq(GSE60143)/Homer	YTGTACTTBH	1e0	-4.600e-01	0.9736	763.0	3.82%	1684.3	3.87%
ATY13(MYB)/col-ATY13-DAP-Seq(GSE60143)/Homer	YYYAACYRHH	1e0	-4.568e-01	0.9736	4686.0	23.43%	10256.7	23.55%
ANAC046(NAC)/colamp-ANAC046-DAP-Seq(GSE60143)/Homer	ACACGYWAYC	1e0	-4.562e-01	0.9736	2579.0	12.90%	5657.7	12.99%
At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer	TTTGAAAA	1e0	-4.534e-01	0.9736	790.0	3.95%	1744.0	4.00%
Rap210(AP2EREBP)/col-Rap210-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-4.533e-01	0.9736	548.0	2.74%	1213.8	2.79%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-4.464e-01	0.9768	19960.0	99.80%	43467.6	99.81%
HSFA1E(HSF)/col-HSFA1E-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-4.441e-01	0.9775	57.0	0.29%	130.2	0.30%
WUS1(Homeobox)/colamp-WUS1-DAP-Seq(GSE60143)/Homer	CAWTCATTCA	1e0	-4.276e-01	0.9921	610.0	3.05%	1352.1	3.10%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.269e-01	0.9921	239.0	1.20%	535.2	1.23%
PLT3(AP2EREBP)/col-PLT3-DAP-Seq(GSE60143)/Homer	GCACGNWTHYCGAGG	1e0	-4.095e-01	1.0000	60.0	0.30%	138.9	0.32%
REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer	AAAAAAAA	1e0	-4.041e-01	1.0000	1252.0	6.26%	2764.4	6.35%
LEP(AP2EREBP)/col-LEP-DAP-Seq(GSE60143)/Homer	CDCCGCCGTC	1e0	-3.966e-01	1.0000	677.0	3.38%	1503.1	3.45%
At1g75490(AP2EREBP)/colamp-At1g75490-DAP-Seq(GSE60143)/Homer	CACCGMCT	1e0	-3.935e-01	1.0000	2371.0	11.86%	5216.4	11.98%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.911e-01	1.0000	163.0	0.81%	369.5	0.85%
DEAR5(AP2EREBP)/col-DEAR5-DAP-Seq(GSE60143)/Homer	NDWTGTCGGTGRWDN	1e0	-3.907e-01	1.0000	119.0	0.60%	271.8	0.62%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-3.857e-01	1.0000	157.0	0.78%	356.8	0.82%
AT1G12630(AP2EREBP)/colamp-AT1G12630-DAP-Seq(GSE60143)/Homer	TGTCGGCA	1e0	-3.820e-01	1.0000	480.0	2.40%	1071.6	2.46%
At4g38000(C2C2dof)/col-At4g38000-DAP-Seq(GSE60143)/Homer	WWWTWACTTTTT	1e0	-3.680e-01	1.0000	1996.0	9.98%	4401.8	10.11%
MYB88(MYB)/col-MYB88-DAP-Seq(GSE60143)/Homer	HNACGCTCCT	1e0	-3.575e-01	1.0000	3243.0	16.21%	7132.4	16.38%
AGL25(MADS)/colamp-AGL25-DAP-Seq(GSE60143)/Homer	TTTCCATWTWTGGAA	1e0	-3.516e-01	1.0000	70.0	0.35%	163.9	0.38%
CDM1(C3H)/colamp-CDM1-DAP-Seq(GSE60143)/Homer	CCGAWAWTWTCGGAN	1e0	-3.460e-01	1.0000	69.0	0.34%	161.8	0.37%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-3.350e-01	1.0000	1915.0	9.57%	4231.4	9.72%
At1g49010(MYBrelated)/col-At1g49010-DAP-Seq(GSE60143)/Homer	RGATAASNTT	1e0	-3.299e-01	1.0000	3137.0	15.68%	6908.4	15.86%
AGL16(MADS)/col-AGL16-DAP-Seq(GSE60143)/Homer	TWCCHWATWDGGAAA	1e0	-3.273e-01	1.0000	104.0	0.52%	241.5	0.55%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-3.267e-01	1.0000	19950.0	99.75%	43450.0	99.77%
HSFA6B(HSF)/colamp-HSFA6B-DAP-Seq(GSE60143)/Homer	NTTCTAGAANHTTCT	1e0	-3.262e-01	1.0000	468.0	2.34%	1051.2	2.41%
RAP21(AP2EREBP)/colamp-RAP21-DAP-Seq(GSE60143)/Homer	BCACCGACAHNN	1e0	-3.233e-01	1.0000	123.0	0.61%	284.8	0.65%
ERF73(AP2EREBP)/col-ERF73-DAP-Seq(GSE60143)/Homer	CCGCCGCC	1e0	-3.192e-01	1.0000	1494.0	7.47%	3311.8	7.60%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-3.160e-01	1.0000	162.0	0.81%	372.4	0.86%
SPL14(SBP)/col-SPL14-DAP-Seq(GSE60143)/Homer	NNWHTGTACGGAHNH	1e0	-3.116e-01	1.0000	112.0	0.56%	260.8	0.60%
At5g08330(TCP)/col-At5g08330-DAP-Seq(GSE60143)/Homer	GGRCCCAC	1e0	-3.095e-01	1.0000	798.0	3.99%	1782.7	4.09%
At1g13300(G2like)/col-At1g13300-DAP-Seq(GSE60143)/Homer	GAATCTWAGATTCYN	1e0	-3.047e-01	1.0000	6.0	0.03%	16.1	0.04%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-3.016e-01	1.0000	1454.0	7.27%	3227.1	7.41%
COG1(C2C2dof)/col-COG1-DAP-Seq(GSE60143)/Homer	DAAAAAGTGA	1e0	-3.003e-01	1.0000	2427.0	12.13%	5362.6	12.31%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.973e-01	1.0000	563.0	2.81%	1265.4	2.91%
At2g44940(AP2EREBP)/colamp-At2g44940-DAP-Seq(GSE60143)/Homer	NYACCGACAHNNNNN	1e0	-2.908e-01	1.0000	154.0	0.77%	356.1	0.82%
AT3G58630(Trihelix)/col-AT3G58630-DAP-Seq(GSE60143)/Homer	TCTCCGGCGA	1e0	-2.907e-01	1.0000	246.0	1.23%	562.6	1.29%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-2.903e-01	1.0000	648.0	3.24%	1454.8	3.34%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-2.870e-01	1.0000	102.0	0.51%	239.7	0.55%
AT1G77200(AP2EREBP)/colamp-AT1G77200-DAP-Seq(GSE60143)/Homer	ACCGACAHWD	1e0	-2.830e-01	1.0000	733.0	3.67%	1643.2	3.77%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.778e-01	1.0000	2300.0	11.50%	5090.3	11.69%
ATHB33(ZFHD)/col-ATHB33-DAP-Seq(GSE60143)/Homer	NGTRATTAAK	1e0	-2.746e-01	1.0000	1894.0	9.47%	4200.9	9.65%
HDG1(Homeobox)/col100-HDG1-DAP-Seq(GSE60143)/Homer	DDYAATTAATGH	1e0	-2.688e-01	1.0000	627.0	3.14%	1411.0	3.24%
At1g72010(TCP)/colamp-At1g72010-DAP-Seq(GSE60143)/Homer	GGDCCCAC	1e0	-2.670e-01	1.0000	635.0	3.17%	1429.1	3.28%
HSFB4(HSF)/col-HSFB4-DAP-Seq(GSE60143)/Homer	TTCTAGAAGCTTCTA	1e0	-2.623e-01	1.0000	22.0	0.11%	56.2	0.13%
DEL1(E2FDP)/colamp-DEL1-DAP-Seq(GSE60143)/Homer	TTCCCGCCAA	1e0	-2.573e-01	1.0000	10.0	0.05%	27.7	0.06%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.476e-01	1.0000	2915.0	14.57%	6448.5	14.81%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-2.448e-01	1.0000	11287.0	56.44%	24720.0	56.76%
ARF2(ARF)/col-ARF2-DAP-Seq(GSE60143)/Homer	TTGTCGGMWN	1e0	-2.363e-01	1.0000	3727.0	18.63%	8231.5	18.90%
ANAC058(NAC)/col-ANAC058-DAP-Seq(GSE60143)/Homer	TWCTTGTDNNACAAG	1e0	-2.288e-01	1.0000	550.0	2.75%	1247.8	2.87%
AT3G60490(AP2EREBP)/colamp-AT3G60490-DAP-Seq(GSE60143)/Homer	NNRCCGACANNNNNN	1e0	-2.202e-01	1.0000	231.0	1.16%	536.5	1.23%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.140e-01	1.0000	94.0	0.47%	226.8	0.52%
ESE1(AP2EREBP)/col-ESE1-DAP-Seq(GSE60143)/Homer	GGCGGCGG	1e0	-2.137e-01	1.0000	1680.0	8.40%	3747.6	8.61%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.102e-01	1.0000	3943.0	19.71%	8715.7	20.01%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.091e-01	1.0000	2047.0	10.23%	4556.5	10.46%
At5g58900(MYBrelated)/colamp-At5g58900-DAP-Seq(GSE60143)/Homer	WWWTYTTATCTWWWW	1e0	-2.072e-01	1.0000	2668.0	13.34%	5921.1	13.60%
ATHB53(HB)/col-ATHB53-DAP-Seq(GSE60143)/Homer	CAATAATT	1e0	-2.067e-01	1.0000	626.0	3.13%	1421.0	3.26%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.054e-01	1.0000	1037.0	5.18%	2331.1	5.35%
VND1(NAC)/col-VND1-DAP-Seq(GSE60143)/Homer	CTTRWDNHWYAAGYW	1e0	-2.042e-01	1.0000	820.0	4.10%	1851.7	4.25%
At5g18450(AP2EREBP)/col-At5g18450-DAP-Seq(GSE60143)/Homer	CACCGCTT	1e0	-2.008e-01	1.0000	2696.0	13.48%	5985.5	13.74%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.004e-01	1.0000	249.0	1.24%	579.1	1.33%
MYB73(MYB)/col-MYB73-DAP-Seq(GSE60143)/Homer	NNNNHAACNGHHDHN	1e0	-1.952e-01	1.0000	3023.0	15.12%	6705.7	15.40%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.927e-01	1.0000	1230.0	6.15%	2761.9	6.34%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.910e-01	1.0000	16.0	0.08%	44.2	0.10%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-1.896e-01	1.0000	259.0	1.29%	603.8	1.39%
At5g52660(MYBrelated)/colamp-At5g52660-DAP-Seq(GSE60143)/Homer	HAAAAATATCTW	1e0	-1.878e-01	1.0000	560.0	2.80%	1277.3	2.93%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-1.876e-01	1.0000	2.0	0.01%	7.3	0.02%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-1.872e-01	1.0000	141.0	0.70%	336.7	0.77%
MYB33(MYB)/col-MYB33-DAP-Seq(GSE60143)/Homer	DDTYNGTTAN	1e0	-1.861e-01	1.0000	2752.0	13.76%	6114.7	14.04%
AT2G01818(PLATZ)/col-AT2G01818-DAP-Seq(GSE60143)/Homer	TCTAGAABSTTC	1e0	-1.836e-01	1.0000	112.0	0.56%	270.3	0.62%
SVP(MADS)/col-SVP-DAP-Seq(GSE60143)/Homer	ANTTWCCHAATTTGG	1e0	-1.694e-01	1.0000	652.0	3.26%	1486.9	3.41%
MYB92(MYB)/colamp-MYB92-DAP-Seq(GSE60143)/Homer	GGTAGGTR	1e0	-1.590e-01	1.0000	1120.0	5.60%	2528.8	5.81%
TCP7(TCP)/col-TCP7-DAP-Seq(GSE60143)/Homer	GTGGGSCCCACHHNN	1e0	-1.522e-01	1.0000	690.0	3.45%	1575.1	3.62%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.515e-01	1.0000	2627.0	13.13%	5855.5	13.45%
AT2G40260(G2like)/colamp-AT2G40260-DAP-Seq(GSE60143)/Homer	WAAAYATTCTTT	1e0	-1.486e-01	1.0000	2415.0	12.07%	5390.1	12.38%
MYB56(MYB)/colamp-MYB56-DAP-Seq(GSE60143)/Homer	HTAACGRMHY	1e0	-1.486e-01	1.0000	1026.0	5.13%	2323.4	5.34%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.467e-01	1.0000	610.0	3.05%	1398.4	3.21%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.453e-01	1.0000	404.0	2.02%	937.1	2.15%
HAP3(CCAATHAP3)/col-HAP3-DAP-Seq(GSE60143)/Homer	TGATGGAW	1e0	-1.446e-01	1.0000	320.0	1.60%	748.8	1.72%
WIP5(C2H2)/colamp-WIP5-DAP-Seq(GSE60143)/Homer	TDTTCTCMAGGT	1e0	-1.407e-01	1.0000	1403.0	7.02%	3161.5	7.26%
PTF1(TCP)/colamp-PTF1-DAP-Seq(GSE60143)/Homer	RDDGGGACCACA	1e0	-1.361e-01	1.0000	64.0	0.32%	163.6	0.38%
IDD2(C2H2)/colamp-IDD2-DAP-Seq(GSE60143)/Homer	HAVAAAAMGACAAAA	1e0	-1.360e-01	1.0000	157.0	0.78%	379.1	0.87%
TRP2(MYBrelated)/colamp-TRP2-DAP-Seq(GSE60143)/Homer	TAAACCCT	1e0	-1.341e-01	1.0000	180.0	0.90%	432.3	0.99%
MYB10(MYB)/col-MYB10-DAP-Seq(GSE60143)/Homer	YCCACCTACCHH	1e0	-1.329e-01	1.0000	421.0	2.10%	978.8	2.25%
MYB116(MYB)/colamp-MYB116-DAP-Seq(GSE60143)/Homer	AGTTAGGCAN	1e0	-1.314e-01	1.0000	786.0	3.93%	1795.9	4.12%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.308e-01	1.0000	3860.0	19.30%	8576.0	19.69%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.307e-01	1.0000	13.0	0.07%	39.7	0.09%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-1.246e-01	1.0000	220.0	1.10%	525.4	1.21%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-1.164e-01	1.0000	595.0	2.97%	1373.2	3.15%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-1.129e-01	1.0000	111.0	0.56%	276.5	0.63%
LCL1(MYBrelated)/colamp-LCL1-DAP-Seq(GSE60143)/Homer	NAAAATATCTWHWWN	1e0	-1.122e-01	1.0000	171.0	0.85%	415.2	0.95%
WRKY17(WRKY)/colamp-WRKY17-DAP-Seq(GSE60143)/Homer	GCGTTGACTTTT	1e0	-1.094e-01	1.0000	6.0	0.03%	21.3	0.05%
WRKY45(WRKY)/col-WRKY45-DAP-Seq(GSE60143)/Homer	HNNNKTTGACTWWNH	1e0	-1.067e-01	1.0000	574.0	2.87%	1329.5	3.05%
AtHB32(ZFHD)/col200-AtHB32-DAP-Seq(GSE60143)/Homer	CGAATTAT	1e0	-1.024e-01	1.0000	1662.0	8.31%	3752.1	8.62%
At1g14580(C2H2)/colamp-At1g14580-DAP-Seq(GSE60143)/Homer	CASAAAAMGACAAAA	1e0	-1.018e-01	1.0000	232.0	1.16%	557.3	1.28%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-1.014e-01	1.0000	416.0	2.08%	975.8	2.24%
NST1(NAC)/colamp-NST1-DAP-Seq(GSE60143)/Homer	WRCTTRWWNWWYAAG	1e0	-1.007e-01	1.0000	946.0	4.73%	2163.4	4.97%
MYB58(MYB)/colamp-MYB58-DAP-Seq(GSE60143)/Homer	YYYACCWACC	1e0	-9.929e-02	1.0000	1093.0	5.46%	2491.1	5.72%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-9.400e-02	1.0000	1808.0	9.04%	4080.9	9.37%
bHLH80(bHLH)/col-bHLH80-DAP-Seq(GSE60143)/Homer	NNNNDCAASTTGHNN	1e0	-9.276e-02	1.0000	1066.0	5.33%	2434.1	5.59%
AT5G56840(MYBrelated)/colamp-AT5G56840-DAP-Seq(GSE60143)/Homer	TGGATAAGGT	1e0	-9.247e-02	1.0000	1978.0	9.89%	4457.6	10.24%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-9.196e-02	1.0000	455.0	2.27%	1066.3	2.45%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-9.138e-02	1.0000	290.0	1.45%	692.2	1.59%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-8.964e-02	1.0000	3080.0	15.40%	6890.0	15.82%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-8.822e-02	1.0000	6.0	0.03%	22.3	0.05%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-8.739e-02	1.0000	65.0	0.33%	171.1	0.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-8.707e-02	1.0000	168.0	0.84%	413.0	0.95%
MYB61(MYB)/colamp-MYB61-DAP-Seq(GSE60143)/Homer	HCYACCTACC	1e0	-8.564e-02	1.0000	1774.0	8.87%	4010.1	9.21%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.349e-02	1.0000	1076.0	5.38%	2461.3	5.65%
E2FA(E2FDP)/colamp-E2FA-DAP-Seq(GSE60143)/Homer	WWTGGCGCCAWWWNN	1e0	-8.307e-02	1.0000	616.0	3.08%	1433.0	3.29%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.885e-02	1.0000	2776.0	13.88%	6229.9	14.31%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-7.830e-02	1.0000	888.0	4.44%	2044.7	4.69%
MYB67(MYB)/col-MYB67-DAP-Seq(GSE60143)/Homer	YYYACCTAAC	1e0	-7.801e-02	1.0000	1076.0	5.38%	2464.2	5.66%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.667e-02	1.0000	1422.0	7.11%	3235.9	7.43%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-7.595e-02	1.0000	145.0	0.73%	362.2	0.83%
bZIP52(bZIP)/colamp-bZIP52-DAP-Seq(GSE60143)/Homer	NDNHCAGCTGTCANN	1e0	-7.541e-02	1.0000	1760.0	8.80%	3986.8	9.15%
ERF38(AP2EREBP)/col-ERF38-DAP-Seq(GSE60143)/Homer	CACCGACA	1e0	-7.268e-02	1.0000	425.0	2.12%	1005.5	2.31%
AT1G01250(AP2EREBP)/col-AT1G01250-DAP-Seq(GSE60143)/Homer	YCACCGACAHTW	1e0	-7.148e-02	1.0000	48.0	0.24%	132.2	0.30%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.945e-02	1.0000	600.0	3.00%	1402.2	3.22%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-6.784e-02	1.0000	2274.0	11.37%	5130.3	11.78%
At3g09600(MYBrelated)/colamp-At3g09600-DAP-Seq(GSE60143)/Homer	AAAATATCTT	1e0	-6.535e-02	1.0000	538.0	2.69%	1264.2	2.90%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-6.524e-02	1.0000	10.0	0.05%	35.7	0.08%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-6.191e-02	1.0000	768.0	3.84%	1784.8	4.10%
MYB40(MYB)/col-MYB40-DAP-Seq(GSE60143)/Homer	TGGTAGGTRARA	1e0	-5.819e-02	1.0000	360.0	1.80%	863.3	1.98%
AT1G76870(Trihelix)/col-AT1G76870-DAP-Seq(GSE60143)/Homer	AAAACCRGWW	1e0	-5.755e-02	1.0000	512.0	2.56%	1209.1	2.78%
TSO1(CPP)/col-TSO1-DAP-Seq(GSE60143)/Homer	RAATTTRAAW	1e0	-5.599e-02	1.0000	159.0	0.80%	400.4	0.92%
AT2G20400(G2like)/colamp-AT2G20400-DAP-Seq(GSE60143)/Homer	DNVGAATATTCBNHN	1e0	-5.532e-02	1.0000	111.0	0.56%	287.4	0.66%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.482e-02	1.0000	334.0	1.67%	805.4	1.85%
FUS3(ABI3VP1)/col-FUS3-DAP-Seq(GSE60143)/Homer	DNNWTNTGCATGKNN	1e0	-5.371e-02	1.0000	1085.0	5.42%	2500.1	5.74%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.823e-02	1.0000	220.0	1.10%	545.5	1.25%
LBD18(LOBAS2)/colamp-LBD18-DAP-Seq(GSE60143)/Homer	CKGAWWTTCHGS	1e0	-4.753e-02	1.0000	3510.0	17.55%	7881.2	18.10%
AT1G69570(C2C2dof)/col-AT1G69570-DAP-Seq(GSE60143)/Homer	WAAAAGTGHH	1e0	-4.736e-02	1.0000	1903.0	9.52%	4328.4	9.94%
HSFB3(HSF)/colamp-HSFB3-DAP-Seq(GSE60143)/Homer	TTCTAGAAGMTTHTW	1e0	-4.722e-02	1.0000	3.0	0.01%	15.3	0.04%
bHLH122(bHLH)/col100-bHLH122-DAP-Seq(GSE60143)/Homer	NDDCAASTTGHHNWW	1e0	-4.690e-02	1.0000	889.0	4.45%	2066.5	4.75%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.656e-02	1.0000	643.0	3.21%	1512.2	3.47%
At4g16750(AP2EREBP)/col-At4g16750-DAP-Seq(GSE60143)/Homer	HACCGACAHA	1e0	-4.636e-02	1.0000	654.0	3.27%	1537.3	3.53%
ANAC071(NAC)/col-ANAC071-DAP-Seq(GSE60143)/Homer	DNCKTNDNNNHNAAG	1e0	-4.576e-02	1.0000	825.0	4.12%	1923.9	4.42%
ATY19(MYB)/col-ATY19-DAP-Seq(GSE60143)/Homer	YYCACCWACCAT	1e0	-4.550e-02	1.0000	741.0	3.71%	1734.8	3.98%
bHLH130(bHLH)/col-bHLH130-DAP-Seq(GSE60143)/Homer	GCAACTTG	1e0	-4.507e-02	1.0000	791.0	3.96%	1847.4	4.24%
CELF2(RRM)/JSL1-CELF2-CLIP-Seq(GSE71264)/Homer	RGTGTCAG	1e0	-4.494e-02	1.0000	369.0	1.85%	890.4	2.04%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-4.209e-02	1.0000	3461.0	17.30%	7781.6	17.87%
AT2G20110(CPP)/colamp-AT2G20110-DAP-Seq(GSE60143)/Homer	ATTYAAATHY	1e0	-3.934e-02	1.0000	2077.0	10.38%	4724.2	10.85%
WRKY22(WRKY)/colamp-WRKY22-DAP-Seq(GSE60143)/Homer	WWAAAGTCAACK	1e0	-3.857e-02	1.0000	774.0	3.87%	1814.6	4.17%
AT1G24250(Orphan)/col-AT1G24250-DAP-Seq(GSE60143)/Homer	KTDGTTGGTDGTTGG	1e0	-3.847e-02	1.0000	297.0	1.49%	728.3	1.67%
ANAC083(NAC)/col-ANAC083-DAP-Seq(GSE60143)/Homer	CKTRWNNNWYAMGTA	1e0	-3.730e-02	1.0000	704.0	3.52%	1657.6	3.81%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-3.618e-02	1.0000	1098.0	5.49%	2546.0	5.85%
MYB63(MYB)/col-MYB63-DAP-Seq(GSE60143)/Homer	BHYACCWACCHH	1e0	-3.568e-02	1.0000	467.0	2.33%	1120.9	2.57%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.559e-02	1.0000	4020.0	20.10%	9024.9	20.72%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-3.534e-02	1.0000	2706.0	13.53%	6124.1	14.06%
GATA19(C2C2gata)/colamp-GATA19-DAP-Seq(GSE60143)/Homer	ATCSGATCVG	1e0	-3.522e-02	1.0000	46.0	0.23%	134.4	0.31%
SPL13(SBP)/col-SPL13-DAP-Seq(GSE60143)/Homer	WAHTGTACGGAH	1e0	-3.521e-02	1.0000	64.0	0.32%	179.1	0.41%
SPL1(SBP)/colamp-SPL1-DAP-Seq(GSE60143)/Homer	HYGTACDTWH	1e0	-3.486e-02	1.0000	2121.0	10.61%	4828.7	11.09%
KAN2(G2like)/colamp-KAN2-DAP-Seq(GSE60143)/Homer	ATATTCTY	1e0	-3.472e-02	1.0000	1913.0	9.56%	4366.8	10.03%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-3.453e-02	1.0000	443.0	2.21%	1066.9	2.45%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.379e-02	1.0000	469.0	2.34%	1126.5	2.59%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.363e-02	1.0000	2632.0	13.16%	5963.3	13.69%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-3.232e-02	1.0000	451.0	2.25%	1086.1	2.49%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-3.001e-02	1.0000	117.0	0.58%	310.1	0.71%
ANAC070(NAC)/colamp-ANAC070-DAP-Seq(GSE60143)/Homer	CTTRHDNHNBAAGHW	1e0	-2.972e-02	1.0000	1227.0	6.13%	2842.7	6.53%
GT1(Trihelix)/col-GT1-DAP-Seq(GSE60143)/Homer	TTAACCATGGTTAAD	1e0	-2.969e-02	1.0000	12.0	0.06%	45.4	0.10%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.939e-02	1.0000	1550.0	7.75%	3565.0	8.19%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-2.925e-02	1.0000	58.0	0.29%	166.3	0.38%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.713e-02	1.0000	353.0	1.76%	865.7	1.99%
AT5G22990(C2H2)/col-AT5G22990-DAP-Seq(GSE60143)/Homer	WCGAHDTCGWHN	1e0	-2.665e-02	1.0000	38.0	0.19%	116.1	0.27%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-2.659e-02	1.0000	5.0	0.03%	24.1	0.06%
At4g32800(AP2EREBP)/colamp-At4g32800-DAP-Seq(GSE60143)/Homer	DYCACCGACAHWWWH	1e0	-2.652e-02	1.0000	60.0	0.30%	172.2	0.40%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.634e-02	1.0000	222.0	1.11%	561.5	1.29%
HAT5(Homeobox)/colamp-HAT5-DAP-Seq(GSE60143)/Homer	DCAATWATTG	1e0	-2.480e-02	1.0000	148.0	0.74%	387.0	0.89%
MYB99(MYB)/colamp-MYB99-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-2.392e-02	1.0000	984.0	4.92%	2304.1	5.29%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.241e-02	1.0000	269.0	1.34%	674.2	1.55%
TCP16(TCP)/colamp-TCP16-DAP-Seq(GSE60143)/Homer	GTGGDCCYNNNNNNN	1e0	-2.209e-02	1.0000	696.0	3.48%	1655.9	3.80%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.100e-02	1.0000	629.0	3.15%	1504.7	3.46%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-2.049e-02	1.0000	11.0	0.06%	44.3	0.10%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.038e-02	1.0000	1088.0	5.44%	2544.8	5.84%
At1g64620(C2C2dof)/colamp-At1g64620-DAP-Seq(GSE60143)/Homer	CACTTTTT	1e0	-2.029e-02	1.0000	2353.0	11.77%	5371.4	12.33%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.973e-02	1.0000	467.0	2.33%	1135.7	2.61%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.972e-02	1.0000	4674.0	23.37%	10503.7	24.12%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.892e-02	1.0000	248.0	1.24%	628.7	1.44%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.886e-02	1.0000	960.0	4.80%	2259.0	5.19%
At5g62940(C2C2dof)/col-At5g62940-DAP-Seq(GSE60143)/Homer	WHWHHACTTTTT	1e0	-1.876e-02	1.0000	5614.0	28.07%	12573.3	28.87%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	-1.814e-02	1.0000	890.0	4.45%	2101.3	4.83%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.717e-02	1.0000	1488.0	7.44%	3449.2	7.92%
HSF21(HSF)/col-HSF21-DAP-Seq(GSE60143)/Homer	CTTCTAGAAGMTTYW	1e0	-1.665e-02	1.0000	10.0	0.05%	42.1	0.10%
EIN3(EIL)/col-EIN3-DAP-Seq(GSE60143)/Homer	ARATTCAATGWATYT	1e0	-1.553e-02	1.0000	151.0	0.76%	401.4	0.92%
MYB113(MYB)/col-MYB113-DAP-Seq(GSE60143)/Homer	HNDAWTCMGTTAYWN	1e0	-1.551e-02	1.0000	688.0	3.44%	1647.8	3.78%
AT5G02460(C2C2dof)/col-AT5G02460-DAP-Seq(GSE60143)/Homer	CHCCTTTT	1e0	-1.473e-02	1.0000	3582.0	17.91%	8112.7	18.63%
IDD4(C2H2)/col-IDD4-DAP-Seq(GSE60143)/Homer	TTTGTCTTTWTB	1e0	-1.471e-02	1.0000	1385.0	6.93%	3224.8	7.40%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e0	-1.446e-02	1.0000	98.0	0.49%	273.7	0.63%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-1.440e-02	1.0000	1317.0	6.59%	3072.7	7.06%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.430e-02	1.0000	821.0	4.11%	1952.3	4.48%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.401e-02	1.0000	976.0	4.88%	2304.4	5.29%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.302e-02	1.0000	1666.0	8.33%	3859.8	8.86%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-1.269e-02	1.0000	979.0	4.90%	2314.2	5.31%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.243e-02	1.0000	413.0	2.07%	1021.3	2.35%
At1g78700(BZR)/col-At1g78700-DAP-Seq(GSE60143)/Homer	NNNNCACGTGNNNNN	1e0	-1.239e-02	1.0000	339.0	1.70%	849.8	1.95%
IDD5(C2H2)/colamp-IDD5-DAP-Seq(GSE60143)/Homer	TTTTGTCTTTTTBTK	1e0	-1.208e-02	1.0000	1072.0	5.36%	2526.0	5.80%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.199e-02	1.0000	1310.0	6.55%	3063.2	7.03%
HDG7(HB)/col-HDG7-DAP-Seq(GSE60143)/Homer	WGCATTTAATGC	1e0	-1.181e-02	1.0000	181.0	0.91%	477.4	1.10%
SeqBias: CG bias	SSSSSSSSSS	1e0	-1.176e-02	1.0000	13063.0	65.31%	28843.1	66.23%
MYB101(MYB)/colamp-MYB101-DAP-Seq(GSE60143)/Homer	TAACNRMY	1e0	-1.137e-02	1.0000	2963.0	14.82%	6755.3	15.51%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.045e-02	1.0000	283.0	1.42%	721.8	1.66%
DEL2(E2FDP)/col-DEL2-DAP-Seq(GSE60143)/Homer	WTTTCSCGCC	1e0	-1.007e-02	1.0000	536.0	2.68%	1310.3	3.01%
SeqBias: TA-repeat	TATATATATA	1e0	-9.586e-03	1.0000	4427.0	22.13%	10003.5	22.97%
MYB3R5(MYB)/col-MYB3R5-DAP-Seq(GSE60143)/Homer	THYAACGGTHAWAWT	1e0	-9.425e-03	1.0000	55.0	0.27%	169.4	0.39%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-9.254e-03	1.0000	1476.0	7.38%	3446.7	7.91%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.728e-03	1.0000	1246.0	6.23%	2931.0	6.73%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-8.556e-03	1.0000	1353.0	6.77%	3172.3	7.28%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.340e-03	1.0000	804.0	4.02%	1929.1	4.43%
At1g69690(TCP)/colamp-At1g69690-DAP-Seq(GSE60143)/Homer	NHGTGGGGCCCACHW	1e0	-8.032e-03	1.0000	230.0	1.15%	600.0	1.38%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-7.801e-03	1.0000	6322.0	31.61%	14185.6	32.57%
FAR1(FAR1)/col-FAR1-DAP-Seq(GSE60143)/Homer	TKNNNYYCACGCGCY	1e0	-7.584e-03	1.0000	116.0	0.58%	325.5	0.75%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-7.066e-03	1.0000	2821.0	14.11%	6463.5	14.84%
BOS1(MYB)/col-BOS1-DAP-Seq(GSE60143)/Homer	NNRCCTAACT	1e0	-6.924e-03	1.0000	1046.0	5.23%	2485.7	5.71%
MYB105(MYB)/colamp-MYB105-DAP-Seq(GSE60143)/Homer	RATWCCGTTA	1e0	-6.401e-03	1.0000	730.0	3.65%	1767.3	4.06%
SGR5(C2H2)/colamp-SGR5-DAP-Seq(GSE60143)/Homer	TTTGTCTTTTTT	1e0	-6.078e-03	1.0000	940.0	4.70%	2248.0	5.16%
TCX2(CPP)/colamp-TCX2-DAP-Seq(GSE60143)/Homer	NNWWTTYRAAHN	1e0	-5.916e-03	1.0000	2236.0	11.18%	5167.9	11.87%
At1g68670(G2like)/colamp-At1g68670-DAP-Seq(GSE60143)/Homer	WNWWHNRAAGATTCT	1e0	-5.653e-03	1.0000	519.0	2.60%	1284.6	2.95%
MYB39(MYB)/col-MYB39-DAP-Seq(GSE60143)/Homer	WWAARKTAGGTGRAA	1e0	-5.579e-03	1.0000	136.0	0.68%	378.8	0.87%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-5.390e-03	1.0000	1689.0	8.45%	3945.4	9.06%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e0	-4.543e-03	1.0000	1161.0	5.80%	2759.2	6.34%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.422e-03	1.0000	20.0	0.10%	79.1	0.18%
AT3G51470(DBP)/col-AT3G51470-DAP-Seq(GSE60143)/Homer	TTWHGGTGCACC	1e0	-4.396e-03	1.0000	1643.0	8.21%	3849.2	8.84%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.145e-03	1.0000	139.0	0.69%	389.2	0.89%
ANL2(HB)/col-ANL2-DAP-Seq(GSE60143)/Homer	CATTAATTGC	1e0	-4.042e-03	1.0000	546.0	2.73%	1354.4	3.11%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.816e-03	1.0000	3125.0	15.62%	7168.5	16.46%
Tal1	CATCTG	1e0	-3.723e-03	1.0000	1884.0	9.42%	4397.7	10.10%
SOL1(CPP)/colamp-SOL1-DAP-Seq(GSE60143)/Homer	ATTTAAATHN	1e0	-3.474e-03	1.0000	2186.0	10.93%	5078.0	11.66%
SPL9(SBP)/colamp-SPL9-DAP-Seq(GSE60143)/Homer	BTGTACTT	1e0	-3.164e-03	1.0000	2431.0	12.16%	5629.2	12.93%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-3.118e-03	1.0000	1072.0	5.36%	2568.4	5.90%
MYB62(MYB)/colamp-MYB62-DAP-Seq(GSE60143)/Homer	NTACCTAACT	1e0	-2.480e-03	1.0000	1469.0	7.34%	3476.1	7.98%
GATA6(C2C2gata)/col200-GATA6-DAP-Seq(GSE60143)/Homer	TAGATCTARAHH	1e0	-2.417e-03	1.0000	80.0	0.40%	246.3	0.57%
DEAR3(AP2EREBP)/colamp-DEAR3-DAP-Seq(GSE60143)/Homer	BCACCGACAWNNNNN	1e0	-2.281e-03	1.0000	202.0	1.01%	551.6	1.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.250e-03	1.0000	612.0	3.06%	1520.4	3.49%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.980e-03	1.0000	169.0	0.84%	472.5	1.08%
TCP17(TCP)/col-TCP17-DAP-Seq(GSE60143)/Homer	GTGGTCCCCA	1e0	-1.957e-03	1.0000	29.0	0.14%	110.5	0.25%
AT2G15740(C2H2)/col-AT2G15740-DAP-Seq(GSE60143)/Homer	DHNDWATCGATD	1e0	-1.454e-03	1.0000	704.0	3.52%	1743.2	4.00%
SPL3(SBP)/colamp-SPL3-DAP-Seq(GSE60143)/Homer	WDTTGTACGGAH	1e0	-1.402e-03	1.0000	17.0	0.08%	76.4	0.18%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.402e-03	1.0000	1350.0	6.75%	3224.5	7.40%
AT3G16280(AP2EREBP)/colamp-AT3G16280-DAP-Seq(GSE60143)/Homer	HCACCGACAHHDHHN	1e0	-1.321e-03	1.0000	231.0	1.16%	629.1	1.44%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-1.107e-03	1.0000	221.0	1.10%	607.3	1.39%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-9.500e-04	1.0000	1392.0	6.96%	3332.0	7.65%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-9.410e-04	1.0000	161.0	0.80%	461.9	1.06%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.360e-04	1.0000	5171.0	25.86%	11769.2	27.02%
MYB51(MYB)/col-MYB51-DAP-Seq(GSE60143)/Homer	GGTAGGTG	1e0	-7.360e-04	1.0000	865.0	4.32%	2131.9	4.90%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-7.270e-04	1.0000	73.0	0.36%	238.3	0.55%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.180e-04	1.0000	1653.0	8.27%	3942.1	9.05%
AtGRF6(GRF)/col-AtGRF6-DAP-Seq(GSE60143)/Homer	NTGTCAGADNNNNNN	1e0	-4.510e-04	1.0000	1477.0	7.38%	3546.3	8.14%
AT1G20910(ARID)/col-AT1G20910-DAP-Seq(GSE60143)/Homer	THAATTRAWN	1e0	-4.340e-04	1.0000	1760.0	8.80%	4190.3	9.62%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-4.230e-04	1.0000	2869.0	14.34%	6688.8	15.36%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.200e-04	1.0000	233.0	1.17%	649.0	1.49%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-4.060e-04	1.0000	3247.0	16.23%	7535.3	17.30%
NGA4(ABI3VP1)/col-NGA4-DAP-Seq(GSE60143)/Homer	TKNTCAGGTG	1e0	-3.660e-04	1.0000	3277.0	16.38%	7606.5	17.47%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.660e-04	1.0000	505.0	2.53%	1305.4	3.00%
ZIM(C2C2gata)/col-ZIM-DAP-Seq(GSE60143)/Homer	ATCSRACGGTYRAGA	1e0	-3.510e-04	1.0000	2.0	0.01%	26.8	0.06%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-2.760e-04	1.0000	72.0	0.36%	243.1	0.56%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-2.760e-04	1.0000	905.0	4.52%	2246.1	5.16%
bHLH28(bHLH)/col-bHLH28-DAP-Seq(GSE60143)/Homer	NHHTGTACGGAH	1e0	-2.560e-04	1.0000	142.0	0.71%	427.7	0.98%
AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer	WTTYTAAGVAAA	1e0	-2.430e-04	1.0000	2946.0	14.73%	6881.1	15.80%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-1.830e-04	1.0000	282.0	1.41%	780.3	1.79%
ANAC017(NAC)/colamp-ANAC017-DAP-Seq(GSE60143)/Homer	TMCTTGNNNNNCAAG	1e0	-1.670e-04	1.0000	75.0	0.38%	255.8	0.59%
AT1G49560(G2like)/colamp-AT1G49560-DAP-Seq(GSE60143)/Homer	GAWTCTNWDA	1e0	-1.630e-04	1.0000	1487.0	7.43%	3597.9	8.26%
AT5G23930(mTERF)/col-AT5G23930-DAP-Seq(GSE60143)/Homer	GGCGGCTG	1e0	-1.220e-04	1.0000	2915.0	14.57%	6836.6	15.70%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.000e-04	1.0000	2851.0	14.26%	6699.2	15.38%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-6.000e-05	1.0000	1054.0	5.27%	2625.1	6.03%
ANAC079(NAC)/colamp-ANAC079-DAP-Seq(GSE60143)/Homer	TACACGCAACCT	1e0	-6.000e-05	1.0000	361.0	1.80%	989.0	2.27%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-5.400e-05	1.0000	1012.0	5.06%	2531.0	5.81%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-5.400e-05	1.0000	1416.0	7.08%	3463.3	7.95%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-5.000e-05	1.0000	2606.0	13.03%	6171.0	14.17%
At3g04030(G2like)/col-At3g04030-DAP-Seq(GSE60143)/Homer	DRGAATCT	1e0	-4.500e-05	1.0000	1034.0	5.17%	2585.5	5.94%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e0	-4.300e-05	1.0000	2070.0	10.35%	4963.0	11.40%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-3.600e-05	1.0000	672.0	3.36%	1741.2	4.00%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-3.300e-05	1.0000	508.0	2.54%	1352.4	3.11%
SPL5(SBP)/colamp-SPL5-DAP-Seq(GSE60143)/Homer	NNHGTACGGHNN	1e0	-3.100e-05	1.0000	269.0	1.34%	770.6	1.77%
AT5G25475(ABI3VP1)/col-AT5G25475-DAP-Seq(GSE60143)/Homer	RNNRNCAAGCADNDB	1e0	-3.000e-05	1.0000	1295.0	6.48%	3198.3	7.34%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-2.800e-05	1.0000	1077.0	5.38%	2695.8	6.19%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-2.500e-05	1.0000	57.0	0.29%	218.9	0.50%
BZR1(BZR)/col-BZR1-DAP-Seq(GSE60143)/Homer	NNCRCACGTGCG	1e0	-1.600e-05	1.0000	71.0	0.36%	261.6	0.60%
At2g45680(TCP)/colamp-At2g45680-DAP-Seq(GSE60143)/Homer	GTGGGNCCCACNDND	1e0	-1.500e-05	1.0000	45.0	0.22%	186.1	0.43%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.300e-05	1.0000	404.0	2.02%	1114.9	2.56%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.100e-05	1.0000	252.0	1.26%	739.5	1.70%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.000e-05	1.0000	197.0	0.98%	600.2	1.38%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.000e-05	1.0000	729.0	3.65%	1899.4	4.36%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.000e-05	1.0000	2076.0	10.38%	5017.5	11.52%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-7.000e-06	1.0000	223.0	1.11%	670.3	1.54%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.000e-06	1.0000	509.0	2.54%	1381.8	3.17%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-5.000e-06	1.0000	3.0	0.01%	44.0	0.10%
SPL15(SBP)/colamp-SPL15-DAP-Seq(GSE60143)/Homer	WDWMMGTACADW	1e0	-5.000e-06	1.0000	1462.0	7.31%	3626.7	8.33%
GRF9(GRF)/colamp-GRF9-DAP-Seq(GSE60143)/Homer	NWCTGACANNNNNNN	1e0	-3.000e-06	1.0000	1117.0	5.58%	2833.3	6.51%
AT4G37180(G2like)/col-AT4G37180-DAP-Seq(GSE60143)/Homer	AGAATCTTNN	1e0	-2.000e-06	1.0000	1355.0	6.78%	3392.2	7.79%
SeqBias: CA-repeat	CACACACACA	1e0	-2.000e-06	1.0000	8029.0	40.14%	18320.0	42.07%
AT1G19040(NAC)/col-AT1G19040-DAP-Seq(GSE60143)/Homer	CTTGNDNHNCAAGYW	1e0	-2.000e-06	1.0000	59.0	0.29%	239.3	0.55%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-2.000e-06	1.0000	1435.0	7.17%	3581.8	8.22%
TCP3(TCP)/colamp-TCP3-DAP-Seq(GSE60143)/Homer	WGTGGTCCCAAHWWW	1e0	-1.000e-06	1.0000	161.0	0.80%	526.4	1.21%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.000e-06	1.0000	1294.0	6.47%	3269.6	7.51%
ZML1(C2C2gata)/colamp-ZML1-DAP-Seq(GSE60143)/Homer	ATCWYRACCGTTSRW	1e0	-0.000e+00	1.0000	2.0	0.01%	45.9	0.11%
MYB3R1(MYB)/col-MYB3R1-DAP-Seq(GSE60143)/Homer	WWDTDACCGTTR	1e0	-0.000e+00	1.0000	254.0	1.27%	780.1	1.79%
AT5G45580(G2like)/colamp-AT5G45580-DAP-Seq(GSE60143)/Homer	ADRGAATCTH	1e0	-0.000e+00	1.0000	1758.0	8.79%	4371.3	10.04%
MYB3R4(MYB)/col-MYB3R4-DAP-Seq(GSE60143)/Homer	AWWTAACCGTTR	1e0	-0.000e+00	1.0000	112.0	0.56%	409.4	0.94%
At4g18890(BZR)/col-At4g18890-DAP-Seq(GSE60143)/Homer	NDBRCACGTGYR	1e0	-0.000e+00	1.0000	135.0	0.68%	477.7	1.10%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-0.000e+00	1.0000	108.0	0.54%	402.8	0.92%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-0.000e+00	1.0000	529.0	2.65%	1492.2	3.43%
At3g12730(G2like)/colamp-At3g12730-DAP-Seq(GSE60143)/Homer	AAGATTCT	1e0	-0.000e+00	1.0000	1662.0	8.31%	4197.8	9.64%
TCP1(TCP)/col-TCP1-DAP-Seq(GSE60143)/Homer	GGGGGCCCMMCN	1e0	-0.000e+00	1.0000	319.0	1.59%	975.4	2.24%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	4210.0	21.05%	10025.9	23.02%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	2025.0	10.12%	5067.5	11.64%
At1g25550(G2like)/colamp-At1g25550-DAP-Seq(GSE60143)/Homer	NAGATTCY	1e0	-0.000e+00	1.0000	1153.0	5.76%	3030.1	6.96%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-0.000e+00	1.0000	4940.0	24.70%	11727.7	26.93%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-0.000e+00	1.0000	395.0	1.98%	1464.9	3.36%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-0.000e+00	1.0000	945.0	4.72%	3321.9	7.63%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	2353.0	11.77%	5929.6	13.62%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-0.000e+00	1.0000	2023.0	10.12%	5236.6	12.02%
At3g24120(G2like)/col-At3g24120-DAP-Seq(GSE60143)/Homer	NWWAGMATMW	1e0	-0.000e+00	1.0000	3980.0	19.90%	9668.0	22.20%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-0.000e+00	1.0000	3423.0	17.11%	8795.8	20.20%
At2g01060(G2like)/colamp-At2g01060-DAP-Seq(GSE60143)/Homer	AGATKCBNWW	1e0	-0.000e+00	1.0000	3756.0	18.78%	9359.8	21.49%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-0.000e+00	1.0000	1076.0	5.38%	3666.4	8.42%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	1621.0	8.11%	4428.9	10.17%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-0.000e+00	1.0000	2300.0	11.50%	6251.8	14.36%
bZIP18(bZIP)/colamp-bZIP18-DAP-Seq(GSE60143)/Homer	KGMCAGCTND	1e0	-0.000e+00	1.0000	7828.0	39.14%	18422.3	42.30%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-0.000e+00	1.0000	6884.0	34.42%	16151.0	37.09%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	1645.0	8.22%	4579.4	10.52%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	1405.0	7.03%	4084.0	9.38%
WRKY7(WRKY)/colamp-WRKY7-DAP-Seq(GSE60143)/Homer	AAAAGTCAACGSHWD	1e0	-0.000e+00	1.0000	0.0	0.00%	4.1	0.01%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-0.000e+00	1.0000	0.0	0.00%	11.7	0.03%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	20000.0	100.00%	43550.2	100.00%