Homer de novo Motif Results (HepG2_minP_positives_20kVs50k_output//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 20000
Total background sequences = 43539
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A T G C A T G C C T G A A G T C C G A T A C G T A T G C A G T C C T A G A T C G 1e-335-7.722e+0210.94%2.97%37.3bp (60.9bp)Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer(0.976)
More Information | Similar Motifs Found		motif file (matrix)
2 C T A G A C G T A T G C T C G A A T G C A C T G A C G T A T C G C G T A A G T C 1e-178-4.117e+029.64%3.79%36.7bp (45.2bp)FEA4(bZIP)/Corn-FEA4-ChIP-Seq(GSE61954)/Homer(0.870)
More Information | Similar Motifs Found		motif file (matrix)
3 A G C T A T C G C G T A G A C T A C G T A C T G A C T G G A T C G A T C T C A G 1e-169-3.908e+029.46%3.79%37.5bp (52.1bp)POL004.1_CCAAT-box/Jaspar(0.944)
More Information | Similar Motifs Found		motif file (matrix)
4 A G C T G T A C G C A T G A T C T C A G A G T C T A C G C T G A C A T G T G C A C A G T A G T C 1e-157-3.629e+021.84%0.04%35.1bp (43.6bp)GFX(?)/Promoter/Homer(0.972)
More Information | Similar Motifs Found		motif file (matrix)
5 T C A G A T G C C T A G T A G C T G C A A C G T A C T G G A T C A T C G A G T C T C G A T A C G 1e-156-3.598e+025.59%1.61%37.5bp (70.6bp)NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer(0.987)
More Information | Similar Motifs Found		motif file (matrix)
6 C T A G C T A G C G A T A T C G T C G A T A G C C G A T T G A C G T C A A C T G T A G C T G C A 1e-127-2.926e+025.76%2.00%35.4bp (37.3bp)Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer(0.935)
More Information | Similar Motifs Found		motif file (matrix)
7 C A T G C A G T G A C T G A T C G C T A T G C A C T G A A C T G A C G T A G T C G T A C G C T A 1e-125-2.886e+029.89%4.75%37.0bp (41.0bp)HNF4G/MA0484.1/Jaspar(0.947)
More Information | Similar Motifs Found		motif file (matrix)
8 A C G T T A C G A G T C G A T C A G T C C T A G C T A G C T G A G T A C C G T A C G A T A C T G 1e-125-2.880e+022.33%0.29%36.2bp (44.6bp)p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer(0.815)
More Information | Similar Motifs Found		motif file (matrix)
9 T G A C T G C A T G A C C A G T A C T G C G T A C A G T A C T G G T C A T G C A T C G A A G C T 1e-123-2.850e+024.45%1.28%36.6bp (42.6bp)Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer(0.968)
More Information | Similar Motifs Found		motif file (matrix)
10 G T C A G T A C G A T C G C T A A G T C G T C A G C A T G A C T G C A T G A T C G T A C G A T C 1e-115-2.654e+022.37%0.35%34.8bp (47.2bp)GFY(?)/Promoter/Homer(0.906)
More Information | Similar Motifs Found		motif file (matrix)
11 C G T A C G T A T C A G C G T A A C G T A C T G A C T G A G T C A T C G A T C G 1e-97-2.253e+021.98%0.28%36.9bp (51.9bp)YY1/MA0095.2/Jaspar(0.946)
More Information | Similar Motifs Found		motif file (matrix)
12 T A C G T C A G G A T C T A C G T C A G T G C A T C A G G T A C T A C G G C T A 1e-80-1.848e+025.83%2.66%37.4bp (72.7bp)Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer(0.785)
More Information | Similar Motifs Found		motif file (matrix)
13 T C A G C A G T C A T G C T A G C T G A G T C A C T G A C G T A G A C T G A C T G T A C G T A C 1e-73-1.684e+022.79%0.84%38.2bp (42.2bp)NFAT5/MA0606.1/Jaspar(0.847)
More Information | Similar Motifs Found		motif file (matrix)
14 C G A T A C G T A G T C A G C T A G T C A C G T A G T C C G T A A C G T A G T C A C G T A C T G 1e-68-1.578e+020.81%0.02%35.2bp (26.7bp)Tal1(0.698)
More Information | Similar Motifs Found		motif file (matrix)
15 A C T G C T A G C G T A G C T A A C T G A C G T C T A G A C T G T A C G G C A T A C T G C A T G 1e-65-1.500e+021.16%0.13%33.1bp (34.7bp)ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer(0.762)
More Information | Similar Motifs Found		motif file (matrix)
16 T C G A A G T C C T G A C G T A A C T G G T A C A G T C A G T C 1e-48-1.112e+025.50%3.03%39.0bp (43.4bp)MBNL1(Znf)/Homo_sapiens-RNCMPT00038-PBM/HughesRNA(0.729)
More Information | Similar Motifs Found		motif file (matrix)
17 A C G T A G T C C G T A C G T A C G T A G T C A G T A C C T A G A C T G C T G A G T A C G T C A 1e-47-1.092e+020.49%0.00%35.0bp (5.7bp)RLR1?/SacCer-Promoters/Homer(0.681)
More Information | Similar Motifs Found		motif file (matrix)
18 A C G T A T C G C G T A A C T G C G T A A C G T A G T C A C G T A G T C A C T G A C G T A C T G 1e-45-1.052e+020.57%0.02%36.8bp (37.3bp)GATA14(C2C2gata)/col-GATA14-DAP-Seq(GSE60143)/Homer(0.712)
More Information | Similar Motifs Found		motif file (matrix)
19 A T C G A G T C T C A G A C G T A T G C A T G C A G T C A G T C C T G A A T C G C G T A A C T G 1e-45-1.050e+020.85%0.11%36.1bp (31.2bp)EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer(0.715)
More Information | Similar Motifs Found		motif file (matrix)
20 C G T A C G T A G T A C C G T A A C T G C G T A A G T C A G T C C G T A A G T C 1e-43-1.006e+020.76%0.08%34.2bp (33.3bp)PB0196.1_Zbtb7b_2/Jaspar(0.702)
More Information | Similar Motifs Found		motif file (matrix)
21 T C A G A T C G C A T G A G T C T A G C A C T G C A G T A T G C A C T G A C G T 1e-42-9.726e+010.85%0.12%38.6bp (52.5bp)SRSF7(RRM,Znf)/Homo_sapiens-RNCMPT00073-PBM/HughesRNA(0.737)
More Information | Similar Motifs Found		motif file (matrix)
22 A C T G A G T C A G T C A C G T A T C G A C T G A G T C A C T G G T A C A C T G C G T A C G T A 1e-39-9.204e+010.43%0.01%36.2bp (41.6bp)E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer(0.733)
More Information | Similar Motifs Found		motif file (matrix)
23 A C G T A T C G A C G T A G T C C G A T C G T A A C T G A G T C A C G T A G T C 1e-32-7.441e+010.57%0.06%36.9bp (33.0bp)sma-4/MA0925.1/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
24 G T A C T G C A T A G C T C A G G C T A T C A G T G C A T A G C G A T C G T A C C T G A T A C G 1e-27-6.403e+010.35%0.01%37.3bp (28.5bp)USF1/MA0093.2/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
25 C G T A A C G T A C T G A G T C A C T G A C T G G T A C A G T C 1e-26-6.019e+011.11%0.37%38.2bp (60.0bp)CG7903(RRM)/Drosophila_melanogaster-RNCMPT00144-PBM/HughesRNA(0.796)
More Information | Similar Motifs Found		motif file (matrix)
26 A C G T C G T A A C T G A C G T C G T A C G T A A G T C A G T C C G T A A G T C 1e-25-5.864e+010.30%0.01%34.5bp (26.1bp)RFX1/MA0365.1/Jaspar(0.736)
More Information | Similar Motifs Found		motif file (matrix)
27 A C T G C A T G A T C G A C T G A C T G A C T G A C T G A C T G A C T G A C T G A C T G A C T G 1e-20-4.771e+010.54%0.12%31.7bp (79.0bp)PB0097.1_Zfp281_1/Jaspar(0.921)
More Information | Similar Motifs Found		motif file (matrix)
28 A C G T A C T G A C G T A T G C A G T C A C G T A C T G C G T A A G T C A G T C 1e-18-4.281e+010.33%0.04%37.3bp (24.9bp)SRSF1(RRM)/Homo_sapiens-RNCMPT00110-PBM/HughesRNA(0.740)
More Information | Similar Motifs Found		motif file (matrix)
29 A C T G A C T G C G T A A G T C A G T C C T A G A G T C A G T C A G T C C G T A 1e-16-3.755e+010.22%0.01%35.9bp (48.4bp)GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer(0.863)
More Information | Similar Motifs Found		motif file (matrix)
30 * C T G A G C T A C G T A C G T A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C T G A 1e-3-7.767e+002.05%1.67%41.1bp (47.9bp)SeqBias: polyA-repeat(0.919)
More Information | Similar Motifs Found		motif file (matrix)